Wall clock time and date at job start Sat Apr 11 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99708 * 2 1 4 4 N 1.46502 * 109.46938 * 122.23880 * 3 2 1 5 5 C 1.36738 * 127.13252 * 264.81855 * 4 3 2 6 6 C 1.50705 * 126.35190 * 359.97438 * 5 4 3 7 7 C 1.53001 * 109.47153 * 274.62425 * 6 5 4 8 8 H 1.08995 * 109.46994 * 54.61520 * 7 6 5 9 9 O 1.42896 * 109.46791 * 294.61801 * 7 6 5 10 10 C 1.50700 * 109.47151 * 174.61914 * 7 6 5 11 11 H 1.08004 * 119.99826 * 359.97438 * 10 7 6 12 12 C 1.37870 * 120.00022 * 180.02562 * 10 7 6 13 13 N 1.31521 * 120.00284 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 120.00106 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47047 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46950 * 119.99701 * 14 12 10 17 17 H 1.48495 * 109.47273 * 239.99599 * 14 12 10 18 18 N 1.30290 * 107.30493 * 180.02562 * 5 4 3 19 19 N 1.28529 * 110.05477 * 359.72606 * 18 5 4 20 20 C 1.31212 * 109.85650 * 0.45284 * 19 18 5 21 21 N 1.38575 * 126.47384 * 179.81662 * 20 19 18 22 22 C 1.48918 * 110.99773 * 359.69564 * 21 20 19 23 23 C 1.51551 * 104.09373 * 205.78678 * 22 21 20 24 24 C 1.37988 * 132.18432 * 202.88431 * 23 22 21 25 25 C 1.38284 * 119.93711 * 179.74360 * 24 23 22 26 26 C 1.38259 * 120.03899 * 0.26282 * 25 24 23 27 27 C 1.38283 * 120.03582 * 0.02562 * 26 25 24 28 28 C 1.37983 * 119.94190 * 359.97438 * 27 26 25 29 29 C 1.49392 * 110.77329 * 247.57342 * 21 20 19 30 30 H 1.08004 * 119.99785 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.00233 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.99714 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47498 * 2.23631 * 3 2 1 34 34 H 1.09001 * 109.46903 * 242.23151 * 3 2 1 35 35 H 1.09003 * 109.46703 * 34.61658 * 6 5 4 36 36 H 1.08998 * 109.47241 * 154.61871 * 6 5 4 37 37 H 0.96704 * 114.00269 * 295.10630 * 9 7 6 38 38 H 0.96997 * 120.00559 * 180.02562 * 13 12 10 39 39 H 1.09002 * 110.50734 * 87.13894 * 22 21 20 40 40 H 1.08996 * 110.50326 * 324.43403 * 22 21 20 41 41 H 1.07998 * 120.02780 * 0.02695 * 24 23 22 42 42 H 1.08003 * 119.98289 * 180.28503 * 25 24 23 43 43 H 1.08002 * 119.98248 * 180.02562 * 26 25 24 44 44 H 1.08009 * 120.02925 * 179.97438 * 27 26 25 45 45 H 1.08996 * 111.06386 * 35.56678 * 29 21 20 46 46 H 1.08999 * 110.08334 * 272.78571 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9457 1.3596 1.1683 5 6 2.6787 1.9386 2.3780 6 6 1.4083 2.6497 2.7670 7 6 1.4845 4.1111 2.3202 8 1 1.7037 4.1539 1.2534 9 8 2.5193 4.7776 3.0461 10 6 0.1655 4.7883 2.5897 11 1 -0.6462 4.2318 3.0348 12 6 -0.0054 6.1178 2.2673 13 7 0.9828 6.7953 1.7249 14 14 -1.6407 6.9570 2.6007 15 1 -2.5814 5.9834 3.2109 16 1 -1.4323 8.0949 3.5318 17 1 -2.2085 7.4597 1.3240 18 7 3.7268 1.7624 3.1317 19 7 4.6286 1.1115 2.4874 20 6 4.2044 0.8437 1.2750 21 7 4.9008 0.1608 0.2906 22 6 6.2474 -0.2494 0.7767 23 6 7.0784 -0.3575 -0.4861 24 6 8.2313 -1.0564 -0.7796 25 6 8.7844 -0.9754 -2.0444 26 6 8.1858 -0.1906 -3.0125 27 6 7.0337 0.5147 -2.7169 28 6 6.4816 0.4341 -1.4549 29 6 5.2532 1.0730 -0.8388 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3558 2.1332 0.0401 34 1 2.6597 1.3804 -0.9093 35 1 0.5589 2.1662 2.2843 36 1 1.2844 2.6065 3.8490 37 1 2.3530 4.8441 3.9965 38 1 0.8627 7.7307 1.4983 39 1 6.1935 -1.2137 1.2819 40 1 6.6605 0.5089 1.4418 41 1 8.6988 -1.6698 -0.0235 42 1 9.6842 -1.5258 -2.2763 43 1 8.6183 -0.1283 -4.0002 44 1 6.5664 1.1281 -3.4732 45 1 5.4851 2.0743 -0.4759 46 1 4.4375 1.1070 -1.5609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342131426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:44 Heat of formation + Delta-G solvation = 102.852612 kcal Electronic energy + Delta-G solvation = -29314.007184 eV Core-core repulsion = 25399.273526 eV Total energy + Delta-G solvation = -3914.733658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.67393 -40.51262 -37.22227 -36.26666 -35.78894 -32.65648 -32.26151 -32.06905 -31.68079 -30.43188 -28.07000 -27.59784 -26.76247 -25.36009 -24.50780 -21.92357 -21.72095 -21.30953 -20.90892 -20.10517 -19.78428 -17.42004 -17.00736 -16.51862 -16.35833 -15.99497 -15.74276 -15.30707 -14.73112 -14.63228 -14.39905 -14.21788 -14.02533 -13.74450 -13.63177 -13.36969 -13.20631 -12.92588 -12.77924 -12.61776 -12.46948 -11.94744 -11.56640 -11.53766 -11.36400 -11.17660 -11.12732 -11.03736 -10.94206 -10.78904 -10.47995 -10.17068 -9.81609 -9.75725 -9.57991 -9.18852 -9.09766 -8.79160 -8.69884 -8.40281 -7.91327 -6.11498 -4.31602 1.05437 1.12663 1.88918 2.06356 2.71263 3.20483 3.24497 3.29961 3.32735 3.49023 3.81129 4.08774 4.22508 4.29808 4.62120 4.73097 4.77281 4.79828 4.91481 4.99993 5.11230 5.13127 5.16011 5.21309 5.25771 5.32918 5.41578 5.51213 5.54329 5.67484 5.72798 5.77024 5.79683 6.02385 6.09633 6.14969 6.23541 6.25243 6.28853 6.38992 6.44219 6.46143 6.56302 6.63626 6.70316 6.85863 7.37213 7.53626 7.72243 8.01458 8.72462 9.18922 9.33773 9.48725 10.92315 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.002749 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.585297 B =10182.675398 C =10382.993980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.177 4.177 3 C 0.136 3.864 4 N -0.469 5.469 5 C 0.227 3.773 6 C -0.066 4.066 7 C 0.240 3.760 8 H 0.050 0.950 9 O -0.560 6.560 10 C -0.575 4.575 11 H 0.060 0.940 12 C 0.080 3.920 13 N -0.857 5.857 14 Si 0.891 3.109 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.283 1.283 18 N -0.287 5.287 19 N -0.316 5.316 20 C 0.317 3.683 21 N -0.411 5.411 22 C 0.090 3.910 23 C -0.095 4.095 24 C -0.097 4.097 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.095 4.095 28 C -0.098 4.098 29 C 0.071 3.929 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.352 0.648 38 H 0.261 0.739 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.077 0.923 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.617 -15.856 -10.149 20.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.196 4.196 3 C 0.013 3.987 4 N -0.163 5.163 5 C -0.040 4.040 6 C -0.106 4.106 7 C 0.181 3.819 8 H 0.067 0.933 9 O -0.362 6.362 10 C -0.613 4.613 11 H 0.079 0.921 12 C -0.127 4.127 13 N -0.492 5.492 14 Si 0.718 3.282 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.209 1.209 18 N -0.126 5.126 19 N -0.160 5.160 20 C -0.040 4.040 21 N -0.134 5.134 22 C -0.037 4.037 23 C -0.096 4.096 24 C -0.115 4.115 25 C -0.135 4.135 26 C -0.137 4.137 27 C -0.114 4.114 28 C -0.099 4.099 29 C -0.056 4.056 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.196 0.804 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.095 0.905 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.485 -16.049 -9.770 21.048 hybrid contribution -1.629 0.943 -0.390 1.922 sum 7.856 -15.106 -10.159 19.828 Atomic orbital electron populations 1.24043 0.95590 1.02750 0.97461 1.23048 0.96212 0.97922 1.02400 1.21017 0.93267 0.97918 0.86471 1.46148 1.12653 1.43835 1.13672 1.25287 1.00013 0.97478 0.81260 1.21248 0.87477 0.98997 1.02883 1.19271 0.87521 0.82594 0.92484 0.93275 1.86539 1.47076 1.80704 1.21912 1.21635 0.98572 0.96331 1.44771 0.92136 1.25045 0.96349 0.97432 0.93860 1.70091 1.30713 1.09044 1.39384 0.86583 0.83846 0.79693 0.78087 1.19573 1.20770 1.20907 1.73990 0.98397 1.14750 1.25431 1.74462 1.23217 1.16094 1.02246 1.22492 0.86153 1.00626 0.94753 1.63366 1.16146 1.29287 1.04631 1.21798 0.84546 1.03346 0.94034 1.20578 0.95732 0.97569 0.95684 1.20438 0.94857 0.99254 0.97001 1.21097 1.00012 0.99278 0.93078 1.21082 0.95708 0.97355 0.99551 1.20448 0.96163 0.99748 0.95036 1.20408 0.96673 0.98316 0.94471 1.22123 0.95708 0.94954 0.92805 0.87520 0.87849 0.86662 0.87301 0.88653 0.90354 0.89060 0.80409 0.92883 0.88228 0.89044 0.85710 0.85640 0.85641 0.85804 0.90519 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 14.32 29.01 0.42 -1.30 16 2 C -0.18 -2.12 9.85 -36.03 -0.35 -2.48 16 3 C 0.14 1.86 6.39 -5.19 -0.03 1.83 16 4 N -0.47 -8.06 2.79 -115.37 -0.32 -8.38 16 5 C 0.23 4.52 7.10 -154.02 -1.09 3.43 16 6 C -0.07 -1.30 4.95 -27.88 -0.14 -1.44 16 7 C 0.24 5.77 2.81 -27.88 -0.08 5.69 16 8 H 0.05 1.29 8.08 -51.93 -0.42 0.87 16 9 O -0.56 -14.47 12.50 -35.23 -0.44 -14.91 16 10 C -0.58 -14.72 8.72 -34.44 -0.30 -15.02 16 11 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 12 C 0.08 2.12 5.40 -17.82 -0.10 2.03 16 13 N -0.86 -24.41 12.84 55.43 0.71 -23.70 16 14 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 N -0.29 -6.25 12.18 32.99 0.40 -5.85 16 19 N -0.32 -6.37 10.89 30.31 0.33 -6.04 16 20 C 0.32 5.49 6.93 -318.89 -2.21 3.28 16 21 N -0.41 -5.83 5.66 -172.49 -0.98 -6.80 16 22 C 0.09 1.16 6.15 -3.44 -0.02 1.13 16 23 C -0.09 -1.09 6.27 -104.15 -0.65 -1.74 16 24 C -0.10 -0.92 10.04 -39.66 -0.40 -1.32 16 25 C -0.12 -0.97 10.05 -39.56 -0.40 -1.36 16 26 C -0.12 -1.00 10.05 -39.56 -0.40 -1.39 16 27 C -0.10 -0.92 10.04 -39.66 -0.40 -1.32 16 28 C -0.10 -1.12 6.27 -104.16 -0.65 -1.78 16 29 C 0.07 0.89 5.90 -3.17 -0.02 0.87 16 30 H 0.11 1.14 7.84 -52.48 -0.41 0.73 16 31 H 0.10 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.11 1.56 7.33 -51.93 -0.38 1.18 16 34 H 0.10 1.14 6.02 -51.93 -0.31 0.82 16 35 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 36 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 37 H 0.35 8.26 9.02 45.56 0.41 8.67 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.09 1.32 7.26 -51.93 -0.38 0.94 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 44 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 45 H 0.08 1.09 7.94 -51.93 -0.41 0.67 16 46 H 0.10 1.05 6.58 -51.93 -0.34 0.71 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -32.60 387.74 -11.88 -44.48 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.58 Total: 11.05 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -6.83 Total: -10.88 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.15 Total: -50.77 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.44 Total: -14.91 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.60 -11.88 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342131426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.335 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds