Wall clock time and date at job start Sat Apr 11 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99708 * 2 1 4 4 N 1.46502 * 109.46938 * 122.23880 * 3 2 1 5 5 C 1.36738 * 127.13252 * 264.81855 * 4 3 2 6 6 C 1.50705 * 126.35190 * 359.97438 * 5 4 3 7 7 C 1.53001 * 109.47153 * 274.62425 * 6 5 4 8 8 H 1.08995 * 109.46994 * 54.61520 * 7 6 5 9 9 O 1.42896 * 109.46791 * 294.61801 * 7 6 5 10 10 C 1.50700 * 109.47151 * 174.61914 * 7 6 5 11 11 H 1.08004 * 119.99826 * 359.97438 * 10 7 6 12 12 C 1.37870 * 120.00022 * 180.02562 * 10 7 6 13 13 N 1.31521 * 120.00284 * 359.97438 * 12 10 7 14 14 Si 1.86802 * 120.00106 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47047 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46950 * 119.99701 * 14 12 10 17 17 H 1.48495 * 109.47273 * 239.99599 * 14 12 10 18 18 N 1.30290 * 107.30493 * 180.02562 * 5 4 3 19 19 N 1.28529 * 110.05477 * 359.72606 * 18 5 4 20 20 C 1.31212 * 109.85650 * 0.45284 * 19 18 5 21 21 N 1.38575 * 126.47384 * 179.81662 * 20 19 18 22 22 C 1.48918 * 110.99773 * 359.69564 * 21 20 19 23 23 C 1.51551 * 104.09373 * 205.78678 * 22 21 20 24 24 C 1.37988 * 132.18432 * 202.88431 * 23 22 21 25 25 C 1.38284 * 119.93711 * 179.74360 * 24 23 22 26 26 C 1.38259 * 120.03899 * 0.26282 * 25 24 23 27 27 C 1.38283 * 120.03582 * 0.02562 * 26 25 24 28 28 C 1.37983 * 119.94190 * 359.97438 * 27 26 25 29 29 C 1.49392 * 110.77329 * 247.57342 * 21 20 19 30 30 H 1.08004 * 119.99785 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.00233 * 179.97438 * 1 2 3 32 32 H 1.07997 * 119.99714 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.47498 * 2.23631 * 3 2 1 34 34 H 1.09001 * 109.46903 * 242.23151 * 3 2 1 35 35 H 1.09003 * 109.46703 * 34.61658 * 6 5 4 36 36 H 1.08998 * 109.47241 * 154.61871 * 6 5 4 37 37 H 0.96704 * 114.00269 * 295.10630 * 9 7 6 38 38 H 0.96997 * 120.00559 * 180.02562 * 13 12 10 39 39 H 1.09002 * 110.50734 * 87.13894 * 22 21 20 40 40 H 1.08996 * 110.50326 * 324.43403 * 22 21 20 41 41 H 1.07998 * 120.02780 * 0.02695 * 24 23 22 42 42 H 1.08003 * 119.98289 * 180.28503 * 25 24 23 43 43 H 1.08002 * 119.98248 * 180.02562 * 26 25 24 44 44 H 1.08009 * 120.02925 * 179.97438 * 27 26 25 45 45 H 1.08996 * 111.06386 * 35.56678 * 29 21 20 46 46 H 1.08999 * 110.08334 * 272.78571 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9457 1.3596 1.1683 5 6 2.6787 1.9386 2.3780 6 6 1.4083 2.6497 2.7670 7 6 1.4845 4.1111 2.3202 8 1 1.7037 4.1539 1.2534 9 8 2.5193 4.7776 3.0461 10 6 0.1655 4.7883 2.5897 11 1 -0.6462 4.2318 3.0348 12 6 -0.0054 6.1178 2.2673 13 7 0.9828 6.7953 1.7249 14 14 -1.6407 6.9570 2.6007 15 1 -2.5814 5.9834 3.2109 16 1 -1.4323 8.0949 3.5318 17 1 -2.2085 7.4597 1.3240 18 7 3.7268 1.7624 3.1317 19 7 4.6286 1.1115 2.4874 20 6 4.2044 0.8437 1.2750 21 7 4.9008 0.1608 0.2906 22 6 6.2474 -0.2494 0.7767 23 6 7.0784 -0.3575 -0.4861 24 6 8.2313 -1.0564 -0.7796 25 6 8.7844 -0.9754 -2.0444 26 6 8.1858 -0.1906 -3.0125 27 6 7.0337 0.5147 -2.7169 28 6 6.4816 0.4341 -1.4549 29 6 5.2532 1.0730 -0.8388 30 1 -0.5400 0.9354 -0.0004 31 1 -0.5401 -0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3558 2.1332 0.0401 34 1 2.6597 1.3804 -0.9093 35 1 0.5589 2.1662 2.2843 36 1 1.2844 2.6065 3.8490 37 1 2.3530 4.8441 3.9965 38 1 0.8627 7.7307 1.4983 39 1 6.1935 -1.2137 1.2819 40 1 6.6605 0.5089 1.4418 41 1 8.6988 -1.6698 -0.0235 42 1 9.6842 -1.5258 -2.2763 43 1 8.6183 -0.1283 -4.0002 44 1 6.5664 1.1281 -3.4732 45 1 5.4851 2.0743 -0.4759 46 1 4.4375 1.1070 -1.5609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342131426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:43 Heat of formation + Delta-G solvation = 84.099044 kcal Electronic energy + Delta-G solvation = -29314.820400 eV Core-core repulsion = 25399.273526 eV Total energy + Delta-G solvation = -3915.546874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.10402 -41.42032 -38.27269 -37.91336 -37.14381 -34.25833 -33.83107 -33.44627 -32.47015 -31.75356 -29.53475 -28.68279 -27.91230 -27.11448 -25.56477 -23.55592 -22.61648 -22.32981 -22.13516 -21.50624 -20.87399 -19.15001 -18.40664 -17.64555 -17.53170 -16.93441 -16.77255 -16.66759 -16.47619 -15.98739 -15.78778 -15.57468 -15.18663 -15.03693 -14.85849 -14.52509 -14.44184 -14.20564 -13.81559 -13.56775 -13.41297 -13.28071 -13.10165 -12.95580 -12.74729 -12.70772 -12.60401 -12.44837 -12.25112 -12.01779 -11.79090 -11.77359 -11.26594 -11.16567 -10.91771 -10.73341 -10.57927 -10.31415 -9.82721 -9.69727 -9.34483 -8.14245 -6.40661 0.29426 0.39646 0.65646 0.85655 1.42249 1.45280 1.54800 1.56312 1.74216 2.40118 2.61045 2.75658 3.13134 3.15368 3.29248 3.45395 3.58750 3.77161 3.85439 3.94023 3.98473 4.07057 4.09161 4.22245 4.27541 4.34296 4.37657 4.49875 4.51831 4.56109 4.62391 4.66594 4.76154 4.84987 4.92615 4.94131 4.97433 5.07482 5.09381 5.39349 5.47076 5.54938 5.55606 5.56975 5.59274 5.63256 5.70103 5.99815 6.01721 6.06890 6.71611 7.33199 7.51780 7.69203 8.90343 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016018 B = 0.002749 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.585297 B =10182.675398 C =10382.993980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.190 4.190 3 C 0.131 3.869 4 N -0.466 5.466 5 C 0.213 3.787 6 C -0.048 4.048 7 C 0.243 3.757 8 H 0.021 0.979 9 O -0.581 6.581 10 C -0.579 4.579 11 H 0.072 0.928 12 C 0.027 3.973 13 N -0.901 5.901 14 Si 0.961 3.039 15 H -0.258 1.258 16 H -0.285 1.285 17 H -0.280 1.280 18 N -0.320 5.320 19 N -0.348 5.348 20 C 0.332 3.668 21 N -0.407 5.407 22 C 0.091 3.909 23 C -0.112 4.112 24 C -0.102 4.102 25 C -0.113 4.113 26 C -0.116 4.116 27 C -0.101 4.101 28 C -0.117 4.117 29 C 0.074 3.926 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.359 0.641 38 H 0.261 0.739 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.142 0.858 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.140 0.860 45 H 0.053 0.947 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.200 -17.533 -11.866 22.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.209 4.209 3 C 0.010 3.990 4 N -0.159 5.159 5 C -0.056 4.056 6 C -0.088 4.088 7 C 0.185 3.815 8 H 0.038 0.962 9 O -0.385 6.385 10 C -0.616 4.616 11 H 0.090 0.910 12 C -0.176 4.176 13 N -0.538 5.538 14 Si 0.786 3.214 15 H -0.182 1.182 16 H -0.211 1.211 17 H -0.206 1.206 18 N -0.158 5.158 19 N -0.192 5.192 20 C -0.026 4.026 21 N -0.131 5.131 22 C -0.036 4.036 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.131 4.131 26 C -0.134 4.134 27 C -0.120 4.120 28 C -0.117 4.117 29 C -0.052 4.052 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.204 0.796 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.160 0.840 42 H 0.174 0.826 43 H 0.173 0.827 44 H 0.158 0.842 45 H 0.071 0.929 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.054 -17.751 -11.496 23.005 hybrid contribution -1.405 1.389 0.038 1.977 sum 7.649 -16.361 -11.458 21.389 Atomic orbital electron populations 1.24253 0.95069 1.03839 0.94901 1.22896 0.96581 0.96758 1.04660 1.21265 0.93140 0.98883 0.85747 1.46314 1.12904 1.42992 1.13738 1.25177 0.99752 0.98337 0.82331 1.20942 0.88355 0.96343 1.03137 1.19134 0.86557 0.84928 0.90928 0.96151 1.86496 1.47955 1.81450 1.22620 1.21992 0.99263 0.96575 1.43817 0.91027 1.25896 0.99716 0.98324 0.93637 1.70238 1.33107 1.09302 1.41141 0.85488 0.79682 0.78466 0.77808 1.18156 1.21107 1.20603 1.73881 0.99227 1.15763 1.26950 1.74378 1.23552 1.17565 1.03742 1.22815 0.86189 0.98990 0.94596 1.63466 1.16714 1.28766 1.04115 1.21755 0.84140 1.02791 0.94913 1.20542 0.96865 0.99183 0.94727 1.20740 0.94081 0.98949 0.98238 1.21509 1.00599 0.98736 0.92239 1.21493 0.94845 0.96155 1.00904 1.20735 0.96685 1.00045 0.94500 1.20399 0.96540 0.99198 0.95589 1.22079 0.97251 0.93598 0.92316 0.87520 0.85583 0.86604 0.88095 0.87164 0.88303 0.88723 0.79600 0.93044 0.87679 0.91209 0.84005 0.82619 0.82716 0.84215 0.92865 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 14.32 67.78 0.97 -1.79 16 2 C -0.19 -4.34 9.85 25.64 0.25 -4.09 16 3 C 0.13 3.58 6.39 85.63 0.55 4.12 16 4 N -0.47 -16.37 2.79 -518.93 -1.45 -17.82 16 5 C 0.21 8.70 7.10 137.64 0.98 9.68 16 6 C -0.05 -1.90 4.95 29.85 0.15 -1.75 16 7 C 0.24 11.93 2.81 29.85 0.08 12.02 16 8 H 0.02 1.12 8.08 -2.39 -0.02 1.10 16 9 O -0.58 -31.07 12.50 -148.98 -1.86 -32.93 16 10 C -0.58 -29.56 8.72 25.60 0.22 -29.34 16 11 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 12 C 0.03 1.43 5.40 84.65 0.46 1.89 16 13 N -0.90 -52.30 12.84 21.45 0.28 -52.03 16 14 Si 0.96 41.33 29.54 68.60 2.03 43.35 16 15 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 18 N -0.32 -14.45 12.18 -49.54 -0.60 -15.05 16 19 N -0.35 -14.67 10.89 -58.01 -0.63 -15.30 16 20 C 0.33 11.89 6.93 260.12 1.80 13.69 16 21 N -0.41 -11.78 5.66 -699.65 -3.96 -15.74 16 22 C 0.09 2.42 6.15 85.44 0.53 2.94 16 23 C -0.11 -2.53 6.27 -19.56 -0.12 -2.65 16 24 C -0.10 -1.74 10.04 22.22 0.22 -1.52 16 25 C -0.11 -1.51 10.05 22.29 0.22 -1.29 16 26 C -0.12 -1.58 10.05 22.29 0.22 -1.35 16 27 C -0.10 -1.76 10.04 22.22 0.22 -1.53 16 28 C -0.12 -2.61 6.27 -19.56 -0.12 -2.73 16 29 C 0.07 1.90 5.90 85.34 0.50 2.41 16 30 H 0.11 2.08 7.84 -2.91 -0.02 2.06 16 31 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.10 2.92 7.33 -2.39 -0.02 2.91 16 34 H 0.11 2.61 6.02 -2.39 -0.01 2.60 16 35 H 0.10 3.46 8.03 -2.39 -0.02 3.44 16 36 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.36 17.44 9.02 -74.05 -0.67 16.77 16 38 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 39 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.07 2.15 7.26 -2.39 -0.02 2.14 16 41 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 42 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 45 H 0.05 1.60 7.94 -2.39 -0.02 1.58 16 46 H 0.11 2.41 6.58 -2.39 -0.02 2.39 16 Total: -1.00 -71.90 387.74 1.27 -70.63 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.34 Total: 36.20 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 7.14 Total: -1.31 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -6.37 Total: -115.94 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.86 Total: -32.93 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -71.90 1.27 -70.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342131426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.725 kcal (2) G-P(sol) polarization free energy of solvation -71.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds