Wall clock time and date at job start Sat Apr 11 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30825 * 126.44092 * 2 1 4 4 N 1.28921 * 109.74368 * 180.13474 * 3 2 1 5 5 C 1.29728 * 109.42607 * 0.10735 * 4 3 2 6 6 N 1.34794 * 126.44404 * 180.02562 * 2 1 3 7 7 C 1.46215 * 128.59917 * 359.54612 * 6 2 1 8 8 C 1.53336 * 109.17449 * 161.61968 * 7 6 2 9 9 N 1.47072 * 109.24340 * 45.66127 * 8 7 6 10 10 C 1.34772 * 120.94779 * 116.43427 * 9 8 7 11 11 O 1.21284 * 120.00656 * 175.30342 * 10 9 8 12 12 C 1.50708 * 119.99784 * 355.30766 * 10 9 8 13 13 H 1.09005 * 109.46664 * 299.99930 * 12 10 9 14 14 C 1.50697 * 109.47288 * 59.99732 * 12 10 9 15 15 H 1.08001 * 119.99688 * 24.94019 * 14 12 10 16 16 C 1.37877 * 120.00206 * 204.93818 * 14 12 10 17 17 N 1.31509 * 119.99875 * 5.07622 * 16 14 12 18 18 Si 1.86800 * 119.99897 * 185.08167 * 16 14 12 19 19 H 1.48501 * 109.47498 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47165 * 120.00175 * 18 16 14 21 21 H 1.48500 * 109.46881 * 239.99547 * 18 16 14 22 22 C 1.50703 * 109.47111 * 179.97438 * 12 10 9 23 23 C 1.38223 * 120.00013 * 303.17601 * 22 12 10 24 24 C 1.38239 * 119.99956 * 179.78742 * 23 22 12 25 25 C 1.38231 * 119.99939 * 0.43936 * 24 23 22 26 26 C 1.38240 * 120.00138 * 359.80928 * 25 24 23 27 27 C 1.38234 * 119.99358 * 123.44329 * 22 12 10 28 28 C 1.47524 * 118.10896 * 296.70221 * 9 8 7 29 29 H 1.09000 * 109.95769 * 283.54178 * 28 9 8 30 30 C 1.53002 * 109.95457 * 162.25938 * 28 9 8 31 31 H 1.09000 * 109.46653 * 270.00049 * 1 2 3 32 32 H 1.09003 * 109.47099 * 29.99473 * 1 2 3 33 33 H 1.09003 * 109.47108 * 149.99768 * 1 2 3 34 34 H 1.09000 * 109.52419 * 41.70928 * 7 6 2 35 35 H 1.08999 * 109.57222 * 281.55706 * 7 6 2 36 36 H 1.09004 * 109.50658 * 285.72879 * 8 7 6 37 37 H 1.08998 * 109.50868 * 165.59645 * 8 7 6 38 38 H 0.97003 * 120.00505 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.00605 * 359.97438 * 23 22 12 40 40 H 1.08000 * 120.00301 * 180.27105 * 24 23 22 41 41 H 1.07995 * 120.00468 * 179.83365 * 25 24 23 42 42 H 1.07996 * 120.00306 * 180.02562 * 26 25 24 43 43 H 1.08002 * 120.00904 * 359.97438 * 27 22 12 44 44 H 1.09002 * 109.46524 * 70.69540 * 30 28 9 45 45 H 1.08995 * 109.46970 * 190.69291 * 30 28 9 46 46 H 1.08994 * 109.47217 * 310.69287 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2841 1.0524 0.0000 4 7 3.5189 0.6820 -0.0029 5 6 3.5807 -0.6138 -0.0071 6 7 2.3077 -1.0843 -0.0005 7 6 1.9304 -2.4969 0.0079 8 6 3.1253 -3.3402 -0.4528 9 7 4.3398 -2.8765 0.2351 10 6 5.0103 -3.6859 1.0786 11 8 6.0556 -3.3169 1.5708 12 6 4.4613 -5.0497 1.4103 13 1 3.4795 -4.9437 1.8717 14 6 4.3377 -5.8622 0.1472 15 1 4.9634 -5.6363 -0.7036 16 6 3.4258 -6.8941 0.0777 17 7 2.5954 -7.1060 1.0752 18 14 3.3701 -7.9911 -1.4332 19 1 4.4000 -7.5463 -2.4062 20 1 3.6388 -9.3962 -1.0349 21 1 2.0267 -7.9025 -2.0598 22 6 5.3938 -5.7475 2.3667 23 6 6.7197 -5.9365 2.0252 24 6 7.5761 -6.5727 2.9043 25 6 7.1042 -7.0280 4.1212 26 6 5.7768 -6.8437 4.4607 27 6 4.9215 -6.2036 3.5832 28 6 4.7997 -1.4982 -0.0199 29 1 5.2860 -1.4424 -0.9938 30 6 5.7725 -1.0610 1.0771 31 1 -0.3632 0.0000 1.0277 32 1 -0.3633 0.8901 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 1.0911 -2.6538 -0.6696 35 1 1.6438 -2.7923 1.0172 36 1 3.2533 -3.2322 -1.5299 37 1 2.9468 -4.3877 -0.2100 38 1 1.9541 -7.8321 1.0266 39 1 7.0876 -5.5844 1.0727 40 1 8.6131 -6.7165 2.6393 41 1 7.7725 -7.5275 4.8069 42 1 5.4082 -7.1990 5.4115 43 1 3.8846 -6.0594 3.8485 44 1 6.7114 -1.6037 0.9674 45 1 5.9594 0.0094 0.9915 46 1 5.3397 -1.2772 2.0538 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361581116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:48 Heat of formation + Delta-G solvation = 71.201164 kcal Electronic energy + Delta-G solvation = -30654.701430 eV Core-core repulsion = 26738.595262 eV Total energy + Delta-G solvation = -3916.106168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.39357 -41.32666 -39.57639 -37.74802 -35.99461 -35.60337 -33.54858 -32.86401 -32.34753 -31.49554 -29.85555 -29.00458 -28.35712 -26.27770 -25.28478 -24.52908 -23.21233 -22.61667 -22.02253 -21.42448 -19.68201 -18.72963 -18.36499 -17.79935 -17.54776 -17.03618 -16.92544 -16.58837 -16.26086 -15.68059 -15.53119 -15.28265 -15.08404 -14.79487 -14.35142 -14.16220 -13.99740 -13.95668 -13.75008 -13.58052 -13.42105 -13.29780 -13.22700 -13.00770 -12.96022 -12.79764 -12.69185 -12.65439 -12.34749 -12.10139 -11.90367 -11.62111 -11.48063 -11.29746 -11.12185 -10.60620 -10.22090 -10.03185 -9.75822 -9.50648 -9.24602 -8.20018 -6.28173 0.73541 0.79175 0.81680 1.36103 1.43696 1.51876 1.57946 1.69818 1.83165 1.97866 2.43488 3.04395 3.08610 3.26977 3.39759 3.51429 3.75669 3.97787 4.03502 4.11604 4.12324 4.22309 4.31449 4.34412 4.45906 4.53888 4.55754 4.63231 4.66985 4.77592 4.88161 4.89053 4.91476 4.97705 4.99083 5.03209 5.08897 5.14232 5.27199 5.39194 5.46306 5.57862 5.68706 5.81744 5.83307 5.85138 5.95886 6.21630 6.36289 6.48220 6.74015 7.33675 7.37650 7.61344 8.86255 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011295 B = 0.004516 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.405308 B = 6198.822551 C = 7592.253249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.183 3.817 3 N -0.343 5.343 4 N -0.315 5.315 5 C 0.162 3.838 6 N -0.464 5.464 7 C 0.088 3.912 8 C 0.080 3.920 9 N -0.614 5.614 10 C 0.534 3.466 11 O -0.564 6.564 12 C 0.062 3.938 13 H 0.067 0.933 14 C -0.512 4.512 15 H 0.057 0.943 16 C 0.049 3.951 17 N -0.890 5.890 18 Si 0.940 3.060 19 H -0.272 1.272 20 H -0.293 1.293 21 H -0.269 1.269 22 C -0.040 4.040 23 C -0.104 4.104 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.135 4.135 27 C -0.131 4.131 28 C 0.233 3.767 29 H 0.107 0.893 30 C -0.117 4.117 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.150 0.850 38 H 0.269 0.731 39 H 0.097 0.903 40 H 0.132 0.868 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.106 0.894 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.547 3.371 -1.617 5.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.084 4.084 3 N -0.184 5.184 4 N -0.154 5.154 5 C -0.108 4.108 6 N -0.154 5.154 7 C -0.034 4.034 8 C -0.042 4.042 9 N -0.348 5.348 10 C 0.326 3.674 11 O -0.443 6.443 12 C 0.041 3.959 13 H 0.085 0.915 14 C -0.550 4.550 15 H 0.075 0.925 16 C -0.155 4.155 17 N -0.526 5.526 18 Si 0.767 3.233 19 H -0.196 1.196 20 H -0.219 1.219 21 H -0.194 1.194 22 C -0.041 4.041 23 C -0.122 4.122 24 C -0.157 4.157 25 C -0.162 4.162 26 C -0.153 4.153 27 C -0.150 4.150 28 C 0.127 3.873 29 H 0.125 0.875 30 C -0.175 4.175 31 H 0.117 0.883 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.160 0.840 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.168 0.832 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.150 0.850 41 H 0.160 0.840 42 H 0.152 0.848 43 H 0.124 0.876 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.757 4.868 -1.294 6.284 hybrid contribution -0.439 -1.933 -0.697 2.101 sum -4.195 2.935 -1.991 5.494 Atomic orbital electron populations 1.20470 0.80082 1.06244 1.05427 1.25619 0.98860 0.82072 1.01887 1.74361 0.96247 1.25430 1.22377 1.73878 1.13161 1.08622 1.19717 1.24901 0.88134 0.92471 1.05335 1.46206 1.06090 1.09727 1.53423 1.22773 1.00634 0.74425 1.05578 1.22699 0.81350 1.02805 0.97372 1.48224 1.28842 1.11648 1.46088 1.21471 0.83322 0.86936 0.75679 1.90598 1.24143 1.75749 1.53842 1.17989 0.94897 0.87484 0.95500 0.91530 1.20671 1.21004 1.16305 0.97015 0.92480 1.25365 0.94472 0.97416 0.98255 1.69966 1.19738 1.30765 1.32151 0.85772 0.78466 0.78757 0.80345 1.19598 1.21944 1.19372 1.20078 0.94161 0.96489 0.93369 1.20834 0.93757 0.98712 0.98946 1.21297 0.99911 0.99506 0.94937 1.21239 0.95904 1.01828 0.97237 1.21282 0.94196 0.99962 0.99840 1.21066 0.99219 1.00397 0.94284 1.19636 0.87851 0.78171 1.01632 0.87536 1.21877 0.99248 1.00717 0.95680 0.88272 0.87692 0.87727 0.83993 0.88829 0.89598 0.83236 0.92137 0.88466 0.85012 0.84040 0.84774 0.87560 0.89550 0.91557 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.28 71.24 0.73 -0.22 16 2 C 0.18 4.95 8.06 138.11 1.11 6.06 16 3 N -0.34 -11.86 12.23 -50.42 -0.62 -12.48 16 4 N -0.31 -11.63 12.13 -50.49 -0.61 -12.25 16 5 C 0.16 5.41 7.15 138.11 0.99 6.40 16 6 N -0.46 -13.11 3.11 -504.98 -1.57 -14.68 16 7 C 0.09 2.07 6.92 86.55 0.60 2.67 16 8 C 0.08 2.33 5.88 86.38 0.51 2.84 16 9 N -0.61 -21.27 2.97 -797.59 -2.37 -23.64 16 10 C 0.53 21.87 6.63 87.66 0.58 22.45 16 11 O -0.56 -25.01 11.02 -3.04 -0.03 -25.05 16 12 C 0.06 2.69 1.56 -13.03 -0.02 2.67 16 13 H 0.07 3.05 7.20 -2.38 -0.02 3.03 16 14 C -0.51 -22.45 5.24 25.60 0.13 -22.32 16 15 H 0.06 2.58 7.81 -2.91 -0.02 2.55 16 16 C 0.05 2.15 5.21 84.66 0.44 2.59 16 17 N -0.89 -41.05 12.92 21.45 0.28 -40.77 16 18 Si 0.94 36.24 29.54 68.60 2.03 38.26 16 19 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 20 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 22 C -0.04 -1.76 4.43 -19.87 -0.09 -1.85 16 23 C -0.10 -4.42 8.02 22.27 0.18 -4.24 16 24 C -0.14 -5.02 10.05 22.27 0.22 -4.79 16 25 C -0.14 -4.79 10.05 22.27 0.22 -4.57 16 26 C -0.13 -4.79 10.05 22.27 0.22 -4.56 16 27 C -0.13 -5.46 9.67 22.27 0.22 -5.24 16 28 C 0.23 7.68 3.82 44.02 0.17 7.85 16 29 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 30 C -0.12 -4.06 7.70 71.98 0.55 -3.51 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.10 1.03 7.67 -2.39 -0.02 1.01 16 34 H 0.14 2.20 7.75 -2.39 -0.02 2.18 16 35 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.15 5.07 4.29 -2.39 -0.01 5.06 16 38 H 0.27 11.96 8.31 -92.71 -0.77 11.19 16 39 H 0.10 4.26 7.77 -2.91 -0.02 4.24 16 40 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 42 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 43 H 0.11 4.43 7.95 -2.91 -0.02 4.41 16 44 H 0.09 3.14 6.40 -2.39 -0.02 3.13 16 45 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 46 H 0.03 1.39 7.39 -2.39 -0.02 1.37 16 Total: -1.00 -61.32 371.48 4.87 -56.45 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 1.00 Total: 31.93 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 6.78 Total: 2.23 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -4.90 Total: -103.82 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.03 Total: -25.05 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.26 kcal Total: -61.32 4.87 -56.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361581116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.647 kcal (2) G-P(sol) polarization free energy of solvation -61.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds