Wall clock time and date at job start Sat Apr 11 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30818 * 126.43928 * 2 1 4 4 N 1.28922 * 109.74341 * 180.13267 * 3 2 1 5 5 C 1.29720 * 109.42819 * 0.09923 * 4 3 2 6 6 N 1.34791 * 126.44066 * 179.97438 * 2 1 3 7 7 C 1.46219 * 128.60791 * 359.42298 * 6 2 1 8 8 C 1.53337 * 109.16974 * 161.67251 * 7 6 2 9 9 N 1.47072 * 109.24025 * 45.69092 * 8 7 6 10 10 C 1.34778 * 120.94298 * 116.49629 * 9 8 7 11 11 O 1.21273 * 119.99948 * 179.97438 * 10 9 8 12 12 C 1.50698 * 120.00007 * 359.96274 * 10 9 8 13 13 H 1.09001 * 109.47444 * 300.00947 * 12 10 9 14 14 C 1.50704 * 109.47021 * 60.00802 * 12 10 9 15 15 H 1.07996 * 120.00253 * 235.34498 * 14 12 10 16 16 C 1.37882 * 119.99738 * 55.34035 * 14 12 10 17 17 N 1.31512 * 120.00089 * 2.03181 * 16 14 12 18 18 Si 1.86797 * 119.99856 * 182.02890 * 16 14 12 19 19 H 1.48504 * 109.47447 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47323 * 120.00526 * 18 16 14 21 21 H 1.48505 * 109.46935 * 240.00400 * 18 16 14 22 22 C 1.50698 * 109.47377 * 180.02562 * 12 10 9 23 23 C 1.38238 * 120.00173 * 226.98318 * 22 12 10 24 24 C 1.38232 * 119.99752 * 179.76585 * 23 22 12 25 25 C 1.38232 * 120.00446 * 0.50446 * 24 23 22 26 26 C 1.38239 * 119.99580 * 359.74882 * 25 24 23 27 27 C 1.38234 * 119.99764 * 47.25454 * 22 12 10 28 28 C 1.47525 * 118.11890 * 296.46029 * 9 8 7 29 29 H 1.08994 * 110.02913 * 162.55312 * 28 9 8 30 30 C 1.53001 * 109.95628 * 283.80026 * 28 9 8 31 31 H 1.08996 * 109.47723 * 270.00337 * 1 2 3 32 32 H 1.08996 * 109.47330 * 30.01060 * 1 2 3 33 33 H 1.09003 * 109.46460 * 150.00480 * 1 2 3 34 34 H 1.09001 * 109.52159 * 281.59251 * 7 6 2 35 35 H 1.09003 * 109.51568 * 41.77359 * 7 6 2 36 36 H 1.08998 * 109.51545 * 285.75195 * 8 7 6 37 37 H 1.09004 * 109.53965 * 165.63672 * 8 7 6 38 38 H 0.97006 * 120.00197 * 179.97438 * 17 16 14 39 39 H 1.08000 * 119.99913 * 359.97438 * 23 22 12 40 40 H 1.08005 * 119.99411 * 180.23377 * 24 23 22 41 41 H 1.07992 * 120.00385 * 179.72737 * 25 24 23 42 42 H 1.08002 * 119.99859 * 179.97438 * 26 25 24 43 43 H 1.07995 * 119.99981 * 0.02562 * 27 22 12 44 44 H 1.09006 * 109.46652 * 177.51606 * 30 28 9 45 45 H 1.09003 * 109.46818 * 297.50693 * 30 28 9 46 46 H 1.08996 * 109.47816 * 57.50770 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2841 1.0524 0.0000 4 7 3.5189 0.6820 -0.0028 5 6 3.5808 -0.6137 -0.0068 6 7 2.3077 -1.0844 0.0005 7 6 1.9305 -2.4970 0.0126 8 6 3.1252 -3.3411 -0.4471 9 7 4.3400 -2.8760 0.2393 10 6 5.0117 -3.6842 1.0831 11 8 6.0117 -3.2831 1.6397 12 6 4.5198 -5.0862 1.3353 13 1 3.5132 -5.0487 1.7517 14 6 4.4984 -5.8521 0.0376 15 1 3.5862 -6.3245 -0.2957 16 6 5.6435 -5.9496 -0.7243 17 7 6.7642 -5.4084 -0.2993 18 14 5.6030 -6.8505 -2.3601 19 1 4.2319 -7.3643 -2.6085 20 1 5.9860 -5.9166 -3.4492 21 1 6.5586 -7.9866 -2.3233 22 6 5.4409 -5.7740 2.3098 23 6 5.8917 -7.0545 2.0488 24 6 6.7404 -7.6835 2.9404 25 6 7.1300 -7.0362 4.0980 26 6 6.6749 -5.7577 4.3615 27 6 5.8304 -5.1266 3.4674 28 6 4.8029 -1.5000 -0.0227 29 1 5.5000 -1.1864 0.7542 30 6 5.4812 -1.4291 -1.3923 31 1 -0.3634 0.0001 1.0276 32 1 -0.3634 0.8898 -0.5140 33 1 -0.3632 -0.8901 -0.5138 34 1 1.6452 -2.7892 1.0233 35 1 1.0907 -2.6555 -0.6640 36 1 3.2526 -3.2355 -1.5244 37 1 2.9473 -4.3884 -0.2025 38 1 7.5699 -5.4773 -0.8351 39 1 5.5835 -7.5621 1.1468 40 1 7.0956 -8.6825 2.7346 41 1 7.7895 -7.5293 4.7966 42 1 6.9790 -5.2521 5.2661 43 1 5.4743 -4.1281 3.6736 44 1 5.7806 -0.4011 -1.5966 45 1 6.3620 -2.0714 -1.3952 46 1 4.7847 -1.7643 -2.1607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361581123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:56 Heat of formation + Delta-G solvation = 81.980935 kcal Electronic energy + Delta-G solvation = -30951.966251 eV Core-core repulsion = 27036.327529 eV Total energy + Delta-G solvation = -3915.638722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.13163 -39.48008 -37.93175 -36.21889 -34.55730 -33.92280 -32.03123 -31.46251 -30.80432 -29.76973 -28.62716 -27.47078 -27.24204 -24.46830 -23.71022 -23.49509 -21.39515 -21.15419 -20.79562 -19.72802 -18.00831 -17.37661 -16.78397 -16.64084 -15.71843 -15.68844 -15.20058 -15.08487 -14.48525 -14.23887 -14.09116 -13.83936 -13.68589 -13.41812 -13.23982 -12.81056 -12.73024 -12.52716 -12.30820 -12.20802 -12.20364 -11.88304 -11.76862 -11.61193 -11.34836 -11.20506 -11.11744 -10.94589 -10.87974 -10.50846 -10.22970 -10.15933 -9.97457 -9.82934 -9.53468 -8.89146 -8.85261 -8.52268 -8.12916 -7.78678 -7.51190 -6.31042 -4.48098 1.94593 2.43461 2.52217 2.55854 3.00297 3.06929 3.17312 3.19508 3.52432 3.85566 4.14361 4.31148 4.45469 4.59106 4.82828 4.89614 4.95769 5.03203 5.11121 5.29108 5.42844 5.49156 5.56049 5.71825 5.78563 5.80566 5.87431 5.94978 6.00729 6.02659 6.04194 6.18615 6.27447 6.29295 6.36399 6.53236 6.56025 6.59373 6.74302 6.98897 7.02249 7.07891 7.13905 7.45854 7.49761 7.53856 7.62021 8.02472 8.12882 8.20568 8.54007 8.89317 9.17700 9.35840 10.68985 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.004422 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.928710 B = 6330.777400 C = 7277.457346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.165 3.835 3 N -0.304 5.304 4 N -0.292 5.292 5 C 0.182 3.818 6 N -0.463 5.463 7 C 0.082 3.918 8 C 0.098 3.902 9 N -0.617 5.617 10 C 0.559 3.441 11 O -0.532 6.532 12 C 0.060 3.940 13 H 0.056 0.944 14 C -0.547 4.547 15 H 0.072 0.928 16 C 0.078 3.922 17 N -0.834 5.834 18 Si 0.883 3.117 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.281 1.281 22 C -0.017 4.017 23 C -0.064 4.064 24 C -0.147 4.147 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.101 4.101 28 C 0.231 3.769 29 H 0.120 0.880 30 C -0.146 4.146 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.145 0.855 38 H 0.267 0.733 39 H 0.128 0.872 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.377 0.936 -0.090 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.102 4.102 3 N -0.145 5.145 4 N -0.131 5.131 5 C -0.087 4.087 6 N -0.154 5.154 7 C -0.042 4.042 8 C -0.026 4.026 9 N -0.353 5.353 10 C 0.351 3.649 11 O -0.407 6.407 12 C 0.039 3.961 13 H 0.074 0.926 14 C -0.584 4.584 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.466 5.466 18 Si 0.710 3.290 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.207 1.207 22 C -0.018 4.018 23 C -0.081 4.081 24 C -0.165 4.165 25 C -0.161 4.161 26 C -0.161 4.161 27 C -0.119 4.119 28 C 0.125 3.875 29 H 0.138 0.862 30 C -0.205 4.205 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.162 0.838 38 H 0.078 0.922 39 H 0.146 0.854 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.167 2.593 0.213 9.529 hybrid contribution -0.117 -1.715 -1.154 2.070 sum -9.284 0.878 -0.941 9.372 Atomic orbital electron populations 1.20143 0.83990 1.04190 1.03764 1.24655 0.96973 0.83249 1.05339 1.74420 0.96240 1.23868 1.19978 1.73992 1.12036 1.07933 1.19113 1.25133 0.87298 0.92533 1.03712 1.45989 1.06748 1.08663 1.53994 1.22723 1.00806 0.76647 1.04040 1.22225 0.82005 1.01044 0.97339 1.48165 1.27959 1.11792 1.47344 1.21231 0.82137 0.86425 0.75146 1.90571 1.24707 1.75384 1.50003 1.17893 0.93832 0.88965 0.95391 0.92578 1.20655 0.97301 1.36332 1.04126 0.91028 1.25024 0.95437 0.94941 0.97707 1.70058 0.99850 1.40111 1.36581 0.86656 0.78557 0.79880 0.83888 1.19380 1.20850 1.20650 1.19747 0.96302 0.93580 0.92207 1.21125 0.94674 0.94916 0.97428 1.21000 1.00460 0.99486 0.95571 1.20793 1.01622 0.95742 0.97915 1.20830 1.00297 0.95456 0.99526 1.20966 0.98211 0.98320 0.94424 1.19434 0.88350 0.79696 1.00054 0.86190 1.21996 1.01274 1.02518 0.94738 0.89861 0.88983 0.90566 0.89122 0.88269 0.91226 0.83758 0.92246 0.85387 0.87991 0.88143 0.88048 0.87638 0.91418 0.90309 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.28 36.01 0.37 -0.16 16 2 C 0.17 2.35 8.06 -155.38 -1.25 1.10 16 3 N -0.30 -5.41 12.23 32.71 0.40 -5.01 16 4 N -0.29 -5.58 12.21 32.79 0.40 -5.18 16 5 C 0.18 3.19 7.16 -155.30 -1.11 2.08 16 6 N -0.46 -6.80 3.11 -110.81 -0.34 -7.14 16 7 C 0.08 0.94 6.92 -4.02 -0.03 0.92 16 8 C 0.10 1.43 5.70 -3.56 -0.02 1.41 16 9 N -0.62 -11.26 2.63 -165.83 -0.44 -11.69 16 10 C 0.56 12.01 5.41 -10.99 -0.06 11.95 16 11 O -0.53 -13.25 13.50 5.56 0.08 -13.18 16 12 C 0.06 1.25 2.00 -94.08 -0.19 1.07 16 13 H 0.06 1.04 7.90 -51.93 -0.41 0.63 16 14 C -0.55 -11.49 4.88 -34.44 -0.17 -11.65 16 15 H 0.07 1.42 7.54 -52.49 -0.40 1.02 16 16 C 0.08 1.77 4.01 -17.82 -0.07 1.70 16 17 N -0.83 -20.80 10.90 55.43 0.60 -20.20 16 18 Si 0.88 18.00 29.54 -169.99 -5.02 12.98 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 C -0.02 -0.38 4.51 -104.62 -0.47 -0.85 16 23 C -0.06 -1.37 8.21 -39.58 -0.32 -1.70 16 24 C -0.15 -2.89 10.05 -39.59 -0.40 -3.29 16 25 C -0.14 -2.68 10.05 -39.58 -0.40 -3.08 16 26 C -0.14 -2.80 10.05 -39.58 -0.40 -3.20 16 27 C -0.10 -2.16 8.21 -39.58 -0.33 -2.49 16 28 C 0.23 4.18 3.25 -68.39 -0.22 3.96 16 29 H 0.12 2.39 7.24 -51.93 -0.38 2.02 16 30 C -0.15 -2.47 9.45 37.16 0.35 -2.12 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.49 7.68 -51.93 -0.40 0.09 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.10 0.81 7.76 -51.93 -0.40 0.40 16 36 H 0.07 1.00 7.47 -51.93 -0.39 0.62 16 37 H 0.14 2.13 4.51 -51.93 -0.23 1.90 16 38 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 39 H 0.13 2.83 6.04 -52.49 -0.32 2.51 16 40 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.11 2.26 7.02 -52.49 -0.37 1.89 16 44 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 46 H 0.05 0.86 7.46 -51.93 -0.39 0.47 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -30.12 367.42 -9.70 -39.81 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.20 Total: 8.44 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -4.72 Total: -4.37 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.62 Total: -49.23 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.02 Total: 12.98 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.12 -9.70 -39.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361581123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.796 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds