Wall clock time and date at job start Sat Apr 11 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30818 * 126.43928 * 2 1 4 4 N 1.28922 * 109.74341 * 180.13267 * 3 2 1 5 5 C 1.29720 * 109.42819 * 0.09923 * 4 3 2 6 6 N 1.34791 * 126.44066 * 179.97438 * 2 1 3 7 7 C 1.46219 * 128.60791 * 359.42298 * 6 2 1 8 8 C 1.53337 * 109.16974 * 161.67251 * 7 6 2 9 9 N 1.47072 * 109.24025 * 45.69092 * 8 7 6 10 10 C 1.34778 * 120.94298 * 116.49629 * 9 8 7 11 11 O 1.21273 * 119.99948 * 179.97438 * 10 9 8 12 12 C 1.50698 * 120.00007 * 359.96274 * 10 9 8 13 13 H 1.09001 * 109.47444 * 300.00947 * 12 10 9 14 14 C 1.50704 * 109.47021 * 60.00802 * 12 10 9 15 15 H 1.07996 * 120.00253 * 235.34498 * 14 12 10 16 16 C 1.37882 * 119.99738 * 55.34035 * 14 12 10 17 17 N 1.31512 * 120.00089 * 2.03181 * 16 14 12 18 18 Si 1.86797 * 119.99856 * 182.02890 * 16 14 12 19 19 H 1.48504 * 109.47447 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47323 * 120.00526 * 18 16 14 21 21 H 1.48505 * 109.46935 * 240.00400 * 18 16 14 22 22 C 1.50698 * 109.47377 * 180.02562 * 12 10 9 23 23 C 1.38238 * 120.00173 * 226.98318 * 22 12 10 24 24 C 1.38232 * 119.99752 * 179.76585 * 23 22 12 25 25 C 1.38232 * 120.00446 * 0.50446 * 24 23 22 26 26 C 1.38239 * 119.99580 * 359.74882 * 25 24 23 27 27 C 1.38234 * 119.99764 * 47.25454 * 22 12 10 28 28 C 1.47525 * 118.11890 * 296.46029 * 9 8 7 29 29 H 1.08994 * 110.02913 * 162.55312 * 28 9 8 30 30 C 1.53001 * 109.95628 * 283.80026 * 28 9 8 31 31 H 1.08996 * 109.47723 * 270.00337 * 1 2 3 32 32 H 1.08996 * 109.47330 * 30.01060 * 1 2 3 33 33 H 1.09003 * 109.46460 * 150.00480 * 1 2 3 34 34 H 1.09001 * 109.52159 * 281.59251 * 7 6 2 35 35 H 1.09003 * 109.51568 * 41.77359 * 7 6 2 36 36 H 1.08998 * 109.51545 * 285.75195 * 8 7 6 37 37 H 1.09004 * 109.53965 * 165.63672 * 8 7 6 38 38 H 0.97006 * 120.00197 * 179.97438 * 17 16 14 39 39 H 1.08000 * 119.99913 * 359.97438 * 23 22 12 40 40 H 1.08005 * 119.99411 * 180.23377 * 24 23 22 41 41 H 1.07992 * 120.00385 * 179.72737 * 25 24 23 42 42 H 1.08002 * 119.99859 * 179.97438 * 26 25 24 43 43 H 1.07995 * 119.99981 * 0.02562 * 27 22 12 44 44 H 1.09006 * 109.46652 * 177.51606 * 30 28 9 45 45 H 1.09003 * 109.46818 * 297.50693 * 30 28 9 46 46 H 1.08996 * 109.47816 * 57.50770 * 30 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2841 1.0524 0.0000 4 7 3.5189 0.6820 -0.0028 5 6 3.5808 -0.6137 -0.0068 6 7 2.3077 -1.0844 0.0005 7 6 1.9305 -2.4970 0.0126 8 6 3.1252 -3.3411 -0.4471 9 7 4.3400 -2.8760 0.2393 10 6 5.0117 -3.6842 1.0831 11 8 6.0117 -3.2831 1.6397 12 6 4.5198 -5.0862 1.3353 13 1 3.5132 -5.0487 1.7517 14 6 4.4984 -5.8521 0.0376 15 1 3.5862 -6.3245 -0.2957 16 6 5.6435 -5.9496 -0.7243 17 7 6.7642 -5.4084 -0.2993 18 14 5.6030 -6.8505 -2.3601 19 1 4.2319 -7.3643 -2.6085 20 1 5.9860 -5.9166 -3.4492 21 1 6.5586 -7.9866 -2.3233 22 6 5.4409 -5.7740 2.3098 23 6 5.8917 -7.0545 2.0488 24 6 6.7404 -7.6835 2.9404 25 6 7.1300 -7.0362 4.0980 26 6 6.6749 -5.7577 4.3615 27 6 5.8304 -5.1266 3.4674 28 6 4.8029 -1.5000 -0.0227 29 1 5.5000 -1.1864 0.7542 30 6 5.4812 -1.4291 -1.3923 31 1 -0.3634 0.0001 1.0276 32 1 -0.3634 0.8898 -0.5140 33 1 -0.3632 -0.8901 -0.5138 34 1 1.6452 -2.7892 1.0233 35 1 1.0907 -2.6555 -0.6640 36 1 3.2526 -3.2355 -1.5244 37 1 2.9473 -4.3884 -0.2025 38 1 7.5699 -5.4773 -0.8351 39 1 5.5835 -7.5621 1.1468 40 1 7.0956 -8.6825 2.7346 41 1 7.7895 -7.5293 4.7966 42 1 6.9790 -5.2521 5.2661 43 1 5.4743 -4.1281 3.6736 44 1 5.7806 -0.4011 -1.5966 45 1 6.3620 -2.0714 -1.3952 46 1 4.7847 -1.7643 -2.1607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361581123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:55 Heat of formation + Delta-G solvation = 66.579487 kcal Electronic energy + Delta-G solvation = -30952.634108 eV Core-core repulsion = 27036.327529 eV Total energy + Delta-G solvation = -3916.306579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.35219 -41.03947 -39.43709 -37.66778 -35.85775 -35.54922 -33.36898 -32.72520 -32.26362 -31.34577 -29.89326 -28.96088 -28.39706 -26.05200 -25.02723 -24.87863 -22.97292 -22.49561 -22.06892 -21.19430 -19.44049 -18.87894 -18.11857 -17.86247 -17.20565 -17.14985 -16.75085 -16.59921 -15.84543 -15.66598 -15.47403 -15.27100 -14.98427 -14.77427 -14.32387 -14.10540 -14.01220 -13.83001 -13.70930 -13.49006 -13.44509 -13.32811 -13.10173 -13.05951 -12.81375 -12.77237 -12.55354 -12.45257 -12.32640 -12.06482 -11.75650 -11.46661 -11.41094 -11.16358 -11.07179 -10.62901 -10.22142 -10.11358 -9.60012 -9.37542 -9.09660 -8.04770 -6.22816 0.77392 0.87377 0.93582 1.43175 1.43489 1.51986 1.57409 1.73917 2.09661 2.26097 2.47112 3.09173 3.21479 3.32266 3.46245 3.56363 3.86000 4.05426 4.07189 4.17224 4.18931 4.32472 4.35691 4.46636 4.52462 4.55173 4.61910 4.69463 4.71060 4.74449 4.83731 4.93597 4.95606 4.98010 5.03030 5.07027 5.07427 5.15650 5.19649 5.45336 5.54594 5.69220 5.74310 5.90323 5.90904 5.93115 5.98456 6.41028 6.53515 6.64844 6.88453 7.44661 7.64779 7.74522 8.94237 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.004422 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.928710 B = 6330.777400 C = 7277.457346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.185 3.815 3 N -0.347 5.347 4 N -0.324 5.324 5 C 0.169 3.831 6 N -0.462 5.462 7 C 0.084 3.916 8 C 0.092 3.908 9 N -0.616 5.616 10 C 0.557 3.443 11 O -0.577 6.577 12 C 0.055 3.945 13 H 0.077 0.923 14 C -0.527 4.527 15 H 0.089 0.911 16 C 0.045 3.955 17 N -0.871 5.871 18 Si 0.932 3.068 19 H -0.249 1.249 20 H -0.296 1.296 21 H -0.295 1.295 22 C -0.035 4.035 23 C -0.082 4.082 24 C -0.152 4.152 25 C -0.142 4.142 26 C -0.149 4.149 27 C -0.120 4.120 28 C 0.235 3.765 29 H 0.089 0.911 30 C -0.133 4.133 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.148 0.852 36 H 0.073 0.927 37 H 0.146 0.854 38 H 0.254 0.746 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.420 -0.312 -0.317 13.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.083 4.083 3 N -0.188 5.188 4 N -0.163 5.163 5 C -0.101 4.101 6 N -0.153 5.153 7 C -0.038 4.038 8 C -0.031 4.031 9 N -0.350 5.350 10 C 0.349 3.651 11 O -0.455 6.455 12 C 0.034 3.966 13 H 0.095 0.905 14 C -0.564 4.564 15 H 0.107 0.893 16 C -0.160 4.160 17 N -0.505 5.505 18 Si 0.759 3.241 19 H -0.172 1.172 20 H -0.222 1.222 21 H -0.222 1.222 22 C -0.036 4.036 23 C -0.100 4.100 24 C -0.170 4.170 25 C -0.160 4.160 26 C -0.167 4.167 27 C -0.138 4.138 28 C 0.128 3.872 29 H 0.107 0.893 30 C -0.192 4.192 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.166 0.834 36 H 0.091 0.909 37 H 0.164 0.836 38 H 0.064 0.936 39 H 0.136 0.864 40 H 0.143 0.857 41 H 0.152 0.848 42 H 0.142 0.858 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.284 1.331 -0.040 12.356 hybrid contribution 0.761 -1.325 -1.030 1.843 sum -11.524 0.007 -1.071 11.573 Atomic orbital electron populations 1.20479 0.79690 1.06312 1.05541 1.25665 0.98894 0.82011 1.01731 1.74350 0.96149 1.25749 1.22524 1.73894 1.13411 1.08941 1.20010 1.24765 0.88150 0.92168 1.05028 1.46170 1.05682 1.09985 1.53425 1.22944 1.00408 0.74243 1.06203 1.22403 0.81597 1.01798 0.97289 1.48142 1.28799 1.11422 1.46657 1.21365 0.81692 0.86865 0.75154 1.90540 1.26767 1.76270 1.51972 1.18007 0.94722 0.88446 0.95400 0.90504 1.20906 0.97288 1.34718 1.03506 0.89267 1.25509 0.95254 0.95486 0.99774 1.70230 1.00237 1.42585 1.37461 0.85899 0.79006 0.78202 0.81016 1.17177 1.22235 1.22163 1.19927 0.97058 0.93981 0.92668 1.21144 0.95969 0.95125 0.97760 1.21326 0.99678 1.00555 0.95456 1.21159 1.01366 0.95365 0.98088 1.21165 0.99516 0.96004 0.99971 1.21017 0.99454 0.98117 0.95200 1.19196 0.88619 0.79943 0.99406 0.89263 1.21851 1.00318 1.02493 0.94559 0.88047 0.88035 0.87275 0.87613 0.83390 0.90886 0.83627 0.93617 0.86389 0.85664 0.84768 0.85780 0.88748 0.90560 0.92773 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.28 71.24 0.73 -0.05 16 2 C 0.19 4.77 8.06 138.12 1.11 5.89 16 3 N -0.35 -12.10 12.23 -50.42 -0.62 -12.72 16 4 N -0.32 -12.53 12.21 -50.18 -0.61 -13.15 16 5 C 0.17 5.92 7.16 138.22 0.99 6.91 16 6 N -0.46 -12.49 3.11 -504.50 -1.57 -14.06 16 7 C 0.08 1.62 6.92 86.55 0.60 2.22 16 8 C 0.09 2.48 5.70 86.38 0.49 2.97 16 9 N -0.62 -22.56 2.63 -796.96 -2.10 -24.66 16 10 C 0.56 24.46 5.41 87.66 0.47 24.94 16 11 O -0.58 -30.19 13.50 -3.01 -0.04 -30.23 16 12 C 0.06 2.29 2.00 -13.03 -0.03 2.26 16 13 H 0.08 2.76 7.90 -2.39 -0.02 2.75 16 14 C -0.53 -21.55 4.88 25.60 0.12 -21.43 16 15 H 0.09 3.30 7.54 -2.91 -0.02 3.27 16 16 C 0.05 2.02 4.01 84.66 0.34 2.36 16 17 N -0.87 -44.67 10.90 21.45 0.23 -44.43 16 18 Si 0.93 36.67 29.54 68.60 2.03 38.70 16 19 H -0.25 -8.85 7.11 99.48 0.71 -8.15 16 20 H -0.30 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 22 C -0.04 -1.57 4.51 -19.87 -0.09 -1.66 16 23 C -0.08 -3.53 8.21 22.27 0.18 -3.35 16 24 C -0.15 -5.81 10.05 22.27 0.22 -5.59 16 25 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 26 C -0.15 -5.71 10.05 22.27 0.22 -5.49 16 27 C -0.12 -5.19 8.21 22.27 0.18 -5.01 16 28 C 0.24 8.80 3.25 44.14 0.14 8.94 16 29 H 0.09 3.86 7.24 -2.39 -0.02 3.84 16 30 C -0.13 -4.66 9.45 71.98 0.68 -3.98 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.11 0.72 7.68 -2.39 -0.02 0.70 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.15 1.49 7.76 -2.39 -0.02 1.47 16 36 H 0.07 1.93 7.47 -2.39 -0.02 1.92 16 37 H 0.15 3.90 4.51 -2.38 -0.01 3.89 16 38 H 0.25 13.24 8.31 -92.70 -0.77 12.46 16 39 H 0.12 5.21 6.04 -2.91 -0.02 5.19 16 40 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 41 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 42 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 43 H 0.09 4.21 7.02 -2.91 -0.02 4.19 16 44 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 45 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.06 2.04 7.46 -2.39 -0.02 2.03 16 Total: -1.00 -69.37 367.42 4.94 -64.43 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 1.00 Total: 31.05 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 6.61 Total: 5.06 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -4.66 Total: -109.02 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.04 Total: -30.23 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -69.37 4.94 -64.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361581123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.012 kcal (2) G-P(sol) polarization free energy of solvation -69.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds