Wall clock time and date at job start Sat Apr 11 2020 06:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33248 * 125.52518 * 2 1 4 4 C 1.30831 * 109.82496 * 179.97438 * 3 2 1 5 5 C 1.50695 * 125.95910 * 179.97438 * 4 3 2 6 6 N 1.34432 * 108.08053 * 359.97438 * 4 3 2 7 7 C 1.46492 * 126.82293 * 179.97438 * 6 4 3 8 8 C 1.53498 * 114.20416 * 124.81270 * 7 6 4 9 9 N 1.47067 * 87.98810 * 87.71832 * 8 7 6 10 10 C 1.34769 * 136.05892 * 206.86251 * 9 8 7 11 11 O 1.21288 * 120.00035 * 175.02408 * 10 9 8 12 12 C 1.50698 * 120.00096 * 355.02833 * 10 9 8 13 13 H 1.08994 * 109.47458 * 51.00654 * 12 10 9 14 14 C 1.50706 * 109.46803 * 291.00709 * 12 10 9 15 15 H 1.07996 * 120.00133 * 333.88668 * 14 12 10 16 16 C 1.37881 * 119.99548 * 153.88249 * 14 12 10 17 17 N 1.31509 * 120.00527 * 5.11937 * 16 14 12 18 18 Si 1.86803 * 119.99531 * 185.11657 * 16 14 12 19 19 H 1.48510 * 109.46684 * 94.98981 * 18 16 14 20 20 H 1.48491 * 109.47053 * 214.98953 * 18 16 14 21 21 H 1.48495 * 109.47183 * 334.99299 * 18 16 14 22 22 C 1.50704 * 109.47115 * 171.01265 * 12 10 9 23 23 C 1.38236 * 120.00068 * 67.60961 * 22 12 10 24 24 C 1.38237 * 119.99487 * 179.78813 * 23 22 12 25 25 C 1.38231 * 120.00544 * 0.43946 * 24 23 22 26 26 C 1.38240 * 119.99397 * 359.81298 * 25 24 23 27 27 C 1.38231 * 119.99800 * 247.88066 * 22 12 10 28 28 C 1.47074 * 87.88134 * 27.12029 * 9 8 7 29 29 N 1.30707 * 125.52493 * 180.27502 * 2 1 3 30 30 H 1.08996 * 109.47064 * 94.97730 * 1 2 3 31 31 H 1.08995 * 109.47549 * 214.97957 * 1 2 3 32 32 H 1.09008 * 109.47073 * 334.98402 * 1 2 3 33 33 H 1.09001 * 109.47267 * 270.03922 * 5 4 3 34 34 H 1.09002 * 109.47178 * 30.03893 * 5 4 3 35 35 H 1.09006 * 109.47596 * 150.03964 * 5 4 3 36 36 H 1.09002 * 113.28771 * 351.75204 * 7 6 4 37 37 H 1.09003 * 113.46841 * 332.93497 * 8 7 6 38 38 H 1.09007 * 113.52424 * 202.50411 * 8 7 6 39 39 H 0.97000 * 120.00173 * 180.02562 * 17 16 14 40 40 H 1.07990 * 119.99889 * 359.97438 * 23 22 12 41 41 H 1.08001 * 119.99719 * 180.27301 * 24 23 22 42 42 H 1.07995 * 120.00594 * 179.83036 * 25 24 23 43 43 H 1.08010 * 119.99481 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.00194 * 359.97438 * 27 22 12 45 45 H 1.09001 * 113.46493 * 87.66240 * 28 9 8 46 46 H 1.09001 * 113.46732 * 218.09973 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5408 0.7304 0.0006 5 6 4.7227 1.6652 0.0002 6 7 3.5966 -0.6127 0.0015 7 6 4.8047 -1.4413 0.0018 8 6 4.8719 -2.4556 1.1520 9 7 4.1357 -3.3975 0.2954 10 6 3.3062 -4.4416 0.4904 11 8 2.7751 -4.9795 -0.4581 12 6 3.0385 -4.9408 1.8869 13 1 2.7493 -4.1041 2.5226 14 6 4.2853 -5.5832 2.4383 15 1 5.0164 -6.0080 1.7663 16 6 4.4927 -5.6285 3.8007 17 7 3.5585 -5.2027 4.6226 18 14 6.1007 -6.2946 4.4789 19 1 7.0357 -5.1687 4.7312 20 1 5.8404 -7.0163 5.7503 21 1 6.7043 -7.2282 3.4944 22 6 1.9240 -5.9547 1.8529 23 6 2.1203 -7.1772 1.2382 24 6 1.0994 -8.1088 1.2109 25 6 -0.1207 -7.8145 1.7903 26 6 -0.3185 -6.5899 2.4005 27 6 0.7038 -5.6600 2.4315 28 6 4.7084 -2.7027 -0.8675 29 7 2.2665 -1.0638 -0.0051 30 1 -0.3633 -0.0892 -1.0238 31 1 -0.3634 -0.8420 0.5891 32 1 -0.3633 0.9313 0.4346 33 1 5.0075 1.8905 -1.0276 34 1 4.4557 2.5888 0.5139 35 1 5.5600 1.1927 0.5139 36 1 5.7205 -0.8680 -0.1424 37 1 4.3147 -2.1465 2.0364 38 1 5.8853 -2.7822 1.3854 39 1 3.7046 -5.2343 5.5810 40 1 3.0721 -7.4055 0.7820 41 1 1.2541 -9.0656 0.7345 42 1 -0.9191 -8.5412 1.7666 43 1 -1.2719 -6.3598 2.8528 44 1 0.5491 -4.7033 2.9083 45 1 5.6786 -3.0946 -1.1728 46 1 4.0122 -2.6038 -1.7003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362435482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:07 Heat of formation + Delta-G solvation = 119.050905 kcal Electronic energy + Delta-G solvation = -29967.248722 eV Core-core repulsion = 26053.217474 eV Total energy + Delta-G solvation = -3914.031248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.11260 -39.80672 -38.36145 -36.86300 -33.72258 -33.58482 -32.27574 -31.03177 -29.85862 -29.75823 -28.95935 -27.59213 -26.67422 -25.82290 -23.87297 -22.45745 -21.50933 -20.77750 -20.53743 -19.84309 -18.42989 -16.84323 -16.68554 -16.12824 -16.03933 -15.78695 -15.09958 -14.82817 -14.44848 -14.37379 -13.98379 -13.73822 -13.64821 -13.47840 -13.04554 -12.99069 -12.78027 -12.63632 -12.41004 -12.33638 -12.18284 -12.11364 -11.97953 -11.61881 -11.55908 -11.47561 -11.05819 -11.02918 -10.87957 -10.37848 -10.23327 -9.99476 -9.83094 -9.54093 -9.39615 -9.16706 -8.73632 -8.63789 -8.11260 -7.86025 -7.53282 -6.25700 -4.33009 1.67990 2.26763 2.45656 2.48061 2.98086 3.14735 3.24350 3.26692 3.41823 3.72359 4.02411 4.16117 4.26871 4.40750 4.65929 4.79792 4.89023 4.99534 5.10363 5.20612 5.29732 5.47762 5.52132 5.54150 5.63366 5.74035 5.78485 5.81808 5.86213 5.89711 5.90970 5.96946 6.00995 6.29672 6.43281 6.53972 6.60533 6.62229 6.67745 6.90480 6.94289 7.05762 7.21319 7.44360 7.52442 7.62980 7.80121 8.03133 8.11393 8.24598 8.43565 8.68826 9.18513 9.32143 10.82418 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009982 B = 0.004427 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.452353 B = 6323.686889 C = 7837.749742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.209 3.791 3 N -0.544 5.544 4 C 0.271 3.729 5 C -0.075 4.075 6 N -0.355 5.355 7 C 0.099 3.901 8 C 0.115 3.885 9 N -0.628 5.628 10 C 0.569 3.431 11 O -0.558 6.558 12 C 0.066 3.934 13 H 0.075 0.925 14 C -0.512 4.512 15 H 0.060 0.940 16 C 0.074 3.926 17 N -0.873 5.873 18 Si 0.896 3.104 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.272 1.272 22 C -0.007 4.007 23 C -0.081 4.081 24 C -0.137 4.137 25 C -0.148 4.148 26 C -0.133 4.133 27 C -0.112 4.112 28 C 0.104 3.896 29 N -0.284 5.284 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.265 0.735 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.096 0.904 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.930 11.307 -6.605 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 N -0.274 5.274 4 C -0.005 4.005 5 C -0.134 4.134 6 N -0.146 5.146 7 C -0.005 4.005 8 C -0.010 4.010 9 N -0.365 5.365 10 C 0.362 3.638 11 O -0.435 6.435 12 C 0.045 3.955 13 H 0.093 0.907 14 C -0.550 4.550 15 H 0.079 0.921 16 C -0.131 4.131 17 N -0.509 5.509 18 Si 0.723 3.277 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.008 4.008 23 C -0.099 4.099 24 C -0.155 4.155 25 C -0.166 4.166 26 C -0.151 4.151 27 C -0.130 4.130 28 C -0.021 4.021 29 N -0.111 5.111 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.152 0.848 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.075 0.925 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.113 0.887 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.083 10.369 -6.866 12.609 hybrid contribution 1.189 -0.466 0.656 1.435 sum 3.272 9.903 -6.210 12.139 Atomic orbital electron populations 1.20050 0.84177 1.03901 1.03442 1.24307 0.98264 0.85799 0.98927 1.70322 0.99750 1.31002 1.26284 1.24303 0.95299 0.83700 0.97181 1.20356 0.91432 0.97449 1.04161 1.49909 1.05423 1.04749 1.54511 1.22823 0.84164 0.92130 1.01422 1.23107 0.98486 0.84759 0.94641 1.49289 1.46779 1.32798 1.07617 1.21186 0.74800 0.75025 0.92757 1.90596 1.50834 1.56846 1.45249 1.17945 0.94278 0.95101 0.88184 0.90713 1.20605 1.03057 1.39715 0.91643 0.92134 1.24944 0.96691 0.94610 0.96845 1.69953 1.32350 1.45261 1.03320 0.86509 0.83274 0.79162 0.78766 1.20458 1.20992 1.19633 1.19964 0.93000 0.95277 0.92596 1.20810 0.97930 0.93271 0.97896 1.20938 0.94130 0.98947 1.01495 1.20778 0.97132 0.97071 1.01662 1.20874 0.98455 0.94617 1.01197 1.20930 0.93008 0.99006 1.00102 1.23043 0.99407 0.87142 0.92510 1.78374 0.86192 1.21660 1.24919 0.90225 0.89908 0.89868 0.89322 0.88653 0.89887 0.84789 0.89788 0.87977 0.92466 0.87143 0.87677 0.87786 0.87658 0.87339 0.88662 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.51 36.01 0.38 -0.33 16 2 C 0.21 3.40 8.14 -156.85 -1.28 2.12 16 3 N -0.54 -8.33 11.19 -8.16 -0.09 -8.42 16 4 C 0.27 3.50 7.98 -155.70 -1.24 2.25 16 5 C -0.07 -0.54 10.06 36.00 0.36 -0.17 16 6 N -0.35 -5.17 3.74 -51.69 -0.19 -5.37 16 7 C 0.10 1.17 4.93 -67.81 -0.33 0.84 16 8 C 0.12 1.73 8.23 -8.51 -0.07 1.66 16 9 N -0.63 -11.89 3.38 -185.23 -0.63 -12.52 16 10 C 0.57 13.37 7.23 -10.99 -0.08 13.29 16 11 O -0.56 -14.54 16.12 5.55 0.09 -14.45 16 12 C 0.07 1.63 2.05 -94.07 -0.19 1.44 16 13 H 0.07 2.00 7.42 -51.93 -0.39 1.61 16 14 C -0.51 -13.03 7.59 -34.44 -0.26 -13.29 16 15 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 16 C 0.07 1.89 5.45 -17.82 -0.10 1.80 16 17 N -0.87 -23.42 13.00 55.43 0.72 -22.70 16 18 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C -0.01 -0.18 4.37 -104.62 -0.46 -0.64 16 23 C -0.08 -1.93 8.20 -39.58 -0.32 -2.25 16 24 C -0.14 -2.87 10.05 -39.58 -0.40 -3.27 16 25 C -0.15 -2.93 10.05 -39.58 -0.40 -3.32 16 26 C -0.13 -2.74 10.05 -39.58 -0.40 -3.14 16 27 C -0.11 -2.61 9.67 -39.59 -0.38 -2.99 16 28 C 0.10 1.47 8.26 -8.51 -0.07 1.40 16 29 N -0.28 -5.16 12.21 32.42 0.40 -4.76 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.42 7.37 -51.93 -0.38 0.04 16 36 H 0.13 0.89 7.20 -51.93 -0.37 0.52 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.11 2.67 7.84 -52.49 -0.41 2.26 16 41 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 43 H 0.11 1.84 8.06 -52.48 -0.42 1.41 16 44 H 0.11 2.47 7.96 -52.49 -0.42 2.05 16 45 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -35.14 394.67 -10.61 -45.75 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.59 Total: 6.32 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -5.24 Total: -4.62 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.21 Total: -53.76 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.09 Total: -14.45 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.14 -10.61 -45.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362435482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.796 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds