Wall clock time and date at job start Sat Apr 11 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30833 * 125.96490 * 2 1 4 4 C 1.33242 * 109.82884 * 180.12204 * 3 2 1 5 5 C 1.50694 * 125.52228 * 179.85838 * 4 3 2 6 6 H 1.08994 * 110.89271 * 357.29138 * 5 4 3 7 7 C 1.55154 * 111.00532 * 121.17435 * 5 4 3 8 8 C 1.54322 * 103.10365 * 153.52382 * 7 5 4 9 9 N 1.47318 * 107.12111 * 338.02046 * 8 7 5 10 10 C 1.34773 * 125.61762 * 178.81400 * 9 8 7 11 11 O 1.21281 * 120.00163 * 179.86549 * 10 9 8 12 12 C 1.50706 * 119.99954 * 359.86782 * 10 9 8 13 13 H 1.08996 * 109.47150 * 300.00021 * 12 10 9 14 14 C 1.50704 * 109.47005 * 59.99999 * 12 10 9 15 15 H 1.08002 * 119.99561 * 235.37090 * 14 12 10 16 16 C 1.37875 * 120.00182 * 55.36176 * 14 12 10 17 17 N 1.31513 * 120.00309 * 1.98662 * 16 14 12 18 18 Si 1.86798 * 119.99840 * 181.98328 * 16 14 12 19 19 H 1.48494 * 109.47462 * 60.00171 * 18 16 14 20 20 H 1.48506 * 109.47283 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47151 * 299.99789 * 18 16 14 22 22 C 1.50702 * 109.47173 * 179.97438 * 12 10 9 23 23 C 1.38235 * 120.00018 * 226.92106 * 22 12 10 24 24 C 1.38236 * 120.00011 * 179.74570 * 23 22 12 25 25 C 1.38236 * 119.99606 * 0.52081 * 24 23 22 26 26 C 1.38237 * 120.00070 * 359.75366 * 25 24 23 27 27 C 1.38231 * 120.00254 * 359.97188 * 26 25 24 28 28 C 1.47421 * 108.73447 * 358.70609 * 9 8 7 29 29 N 1.30712 * 108.94659 * 359.59718 * 4 3 2 30 30 N 1.34436 * 125.95812 * 179.67504 * 2 1 3 31 31 H 0.96997 * 126.82602 * 0.06951 * 30 2 1 32 32 H 1.08998 * 109.47117 * 270.30430 * 1 2 3 33 33 H 1.08999 * 109.47119 * 30.30390 * 1 2 3 34 34 H 1.09000 * 109.47225 * 150.29928 * 1 2 3 35 35 H 1.09004 * 110.72233 * 271.97350 * 7 5 4 36 36 H 1.09005 * 110.72313 * 35.07116 * 7 5 4 37 37 H 1.08998 * 109.88477 * 97.31933 * 8 7 5 38 38 H 1.09003 * 109.88261 * 218.48285 * 8 7 5 39 39 H 0.96995 * 120.00250 * 180.02562 * 17 16 14 40 40 H 1.08004 * 119.99785 * 359.97438 * 23 22 12 41 41 H 1.07996 * 120.00272 * 180.28645 * 24 23 22 42 42 H 1.08001 * 119.99603 * 179.76481 * 25 24 23 43 43 H 1.08003 * 119.99468 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.00391 * 180.02562 * 27 26 25 45 45 H 1.09006 * 110.36363 * 265.43929 * 28 9 8 46 46 H 1.08997 * 110.46361 * 143.16759 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6886 -0.0027 5 6 4.7372 1.6235 -0.0066 6 1 4.4110 2.6623 -0.0551 7 6 5.6415 1.3818 1.2308 8 6 7.0295 1.8517 0.7469 9 7 7.0166 1.7982 -0.7253 10 6 8.0360 2.1523 -1.5325 11 8 7.9151 2.0647 -2.7361 12 6 9.3263 2.6572 -0.9396 13 1 9.1301 3.5552 -0.3538 14 6 9.9190 1.5959 -0.0489 15 1 10.1523 1.8236 0.9808 16 6 10.1632 0.3342 -0.5483 17 7 9.9155 0.0678 -1.8121 18 14 10.8461 -0.9970 0.5702 19 1 9.9031 -1.2320 1.6930 20 1 11.0186 -2.2530 -0.2031 21 1 12.1602 -0.5642 1.1098 22 6 10.2953 2.9812 -2.0474 23 6 11.6032 2.5399 -1.9727 24 6 12.4907 2.8326 -2.9913 25 6 12.0730 3.5758 -4.0795 26 6 10.7666 4.0219 -4.1515 27 6 9.8777 3.7244 -3.1356 28 6 5.7055 1.2908 -1.1691 29 7 3.6194 -0.6169 0.0043 30 7 2.2964 -1.0882 0.0062 31 1 2.0093 -2.0147 0.0105 32 1 -0.3633 0.0055 1.0276 33 1 -0.3633 0.8872 -0.5185 34 1 -0.3634 -0.8926 -0.5092 35 1 5.3051 1.9806 2.0772 36 1 5.6622 0.3239 1.4927 37 1 7.2112 2.8740 1.0786 38 1 7.8022 1.1899 1.1383 39 1 10.0870 -0.8199 -2.1634 40 1 11.9307 1.9633 -1.1202 41 1 13.5113 2.4839 -2.9352 42 1 12.7674 3.8077 -4.8735 43 1 10.4405 4.6029 -5.0015 44 1 8.8569 4.0725 -3.1920 45 1 5.7501 0.2135 -1.3292 46 1 5.3903 1.7965 -2.0818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362763362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:16 Heat of formation + Delta-G solvation = 80.865656 kcal Electronic energy + Delta-G solvation = -29633.450688 eV Core-core repulsion = 25717.763603 eV Total energy + Delta-G solvation = -3915.687084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.24718 -39.21099 -37.95644 -36.33754 -33.64078 -33.28976 -32.47901 -30.83817 -30.58782 -29.61839 -28.77496 -27.96798 -27.03597 -24.36358 -23.24228 -22.03557 -21.22837 -21.04855 -20.27906 -19.57847 -18.33780 -18.06184 -16.83749 -15.88399 -15.78354 -15.44908 -15.22619 -14.84007 -14.54128 -14.26864 -13.63327 -13.55299 -13.40757 -13.34726 -13.18698 -12.99992 -12.80288 -12.40639 -12.23062 -11.97782 -11.94623 -11.75710 -11.52005 -11.29291 -11.21321 -10.99843 -10.89863 -10.74890 -10.50531 -10.32134 -10.07162 -10.05319 -9.99675 -9.61988 -9.46456 -9.33062 -8.64369 -8.25934 -7.64108 -7.52497 -7.34177 -6.08102 -4.22809 1.48634 2.51367 2.59869 2.66930 2.76880 3.23757 3.31205 3.32484 3.71863 4.07521 4.25172 4.38531 4.49575 4.66197 4.91643 4.99754 5.04515 5.08193 5.16859 5.23429 5.42062 5.44646 5.73398 5.80374 5.90584 6.01846 6.03862 6.09850 6.16624 6.18768 6.33577 6.42413 6.42904 6.51918 6.58222 6.72042 6.75300 6.83010 6.92309 6.94506 7.19196 7.25720 7.39599 7.60796 7.70002 7.73762 7.85063 8.02913 8.22261 8.32808 8.65868 8.84633 9.41364 9.71684 10.92500 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015154 B = 0.003269 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.235095 B = 8563.645431 C = 9677.891117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.276 3.724 3 N -0.537 5.537 4 C 0.249 3.751 5 C -0.014 4.014 6 H 0.108 0.892 7 C -0.122 4.122 8 C 0.116 3.884 9 N -0.617 5.617 10 C 0.568 3.432 11 O -0.546 6.546 12 C 0.062 3.938 13 H 0.056 0.944 14 C -0.536 4.536 15 H 0.067 0.933 16 C 0.075 3.925 17 N -0.840 5.840 18 Si 0.884 3.116 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.014 4.014 23 C -0.064 4.064 24 C -0.148 4.148 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.100 4.100 28 C 0.127 3.873 29 N -0.303 5.303 30 N -0.486 5.486 31 H 0.438 0.562 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.265 0.735 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.062 0.938 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.336 0.687 5.595 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.003 4.003 3 N -0.267 5.267 4 C -0.034 4.034 5 C -0.036 4.036 6 H 0.126 0.874 7 C -0.161 4.161 8 C -0.008 4.008 9 N -0.353 5.353 10 C 0.360 3.640 11 O -0.422 6.422 12 C 0.041 3.959 13 H 0.074 0.926 14 C -0.574 4.574 15 H 0.085 0.915 16 C -0.133 4.133 17 N -0.473 5.473 18 Si 0.711 3.289 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.015 4.015 23 C -0.082 4.082 24 C -0.166 4.166 25 C -0.163 4.163 26 C -0.163 4.163 27 C -0.119 4.119 28 C 0.002 3.998 29 N -0.131 5.131 30 N -0.204 5.204 31 H 0.284 0.716 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.724 0.489 4.706 14.516 hybrid contribution -0.127 -1.948 0.415 1.996 sum -13.851 -1.459 5.121 14.839 Atomic orbital electron populations 1.20367 0.83785 1.04919 1.04419 1.24389 0.96563 0.83037 0.96265 1.70359 1.01459 1.29488 1.25360 1.23919 0.92642 0.89908 0.96900 1.20733 0.88199 0.96724 0.97924 0.87369 1.22780 0.94567 1.02568 0.96192 1.21967 0.95978 1.01351 0.81481 1.48258 1.13045 1.67656 1.06356 1.20851 0.82822 0.74926 0.85450 1.90547 1.81225 1.55197 1.15252 1.17829 0.88669 0.96472 0.92901 0.92569 1.20592 1.44982 0.94846 0.96964 0.91503 1.25032 0.94993 0.98478 0.94778 1.70051 1.43682 1.21460 1.12081 0.86779 0.79780 0.81506 0.80854 1.20011 1.21343 1.19955 1.19828 0.94311 0.92629 0.94779 1.21141 0.92939 0.96124 0.98018 1.20982 0.98980 1.00988 0.95661 1.20766 0.95946 1.01320 0.98307 1.20816 0.94068 1.02545 0.98836 1.20980 0.98028 0.98606 0.94238 1.21874 0.83090 0.99454 0.95373 1.78115 0.95980 1.12496 1.26493 1.48037 1.04516 1.09938 1.57949 0.71642 0.89109 0.88381 0.89992 0.90329 0.90499 0.92214 0.89353 0.92466 0.85417 0.88092 0.88264 0.88137 0.87507 0.91986 0.91153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.51 36.00 0.38 -0.01 16 2 C 0.28 2.91 8.24 -155.69 -1.28 1.63 16 3 N -0.54 -7.60 11.19 -8.16 -0.09 -7.69 16 4 C 0.25 3.85 6.83 -156.86 -1.07 2.78 16 5 C -0.01 -0.22 3.58 -89.63 -0.32 -0.54 16 6 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 7 C -0.12 -1.79 6.40 -24.90 -0.16 -1.95 16 8 C 0.12 2.03 6.03 -2.90 -0.02 2.01 16 9 N -0.62 -12.96 3.33 -170.28 -0.57 -13.52 16 10 C 0.57 13.91 5.52 -10.98 -0.06 13.85 16 11 O -0.55 -15.11 14.21 5.56 0.08 -15.03 16 12 C 0.06 1.49 2.32 -94.07 -0.22 1.27 16 13 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.54 -13.00 5.12 -34.44 -0.18 -13.17 16 15 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 16 C 0.08 1.91 4.00 -17.82 -0.07 1.84 16 17 N -0.84 -23.33 10.90 55.43 0.60 -22.73 16 18 Si 0.88 20.01 29.54 -169.99 -5.02 14.99 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C -0.01 -0.35 4.51 -104.62 -0.47 -0.82 16 23 C -0.06 -1.52 8.20 -39.58 -0.32 -1.85 16 24 C -0.15 -3.15 10.05 -39.58 -0.40 -3.55 16 25 C -0.15 -2.94 10.05 -39.58 -0.40 -3.34 16 26 C -0.14 -3.04 10.05 -39.58 -0.40 -3.43 16 27 C -0.10 -2.33 8.21 -39.58 -0.33 -2.65 16 28 C 0.13 2.42 6.36 -2.53 -0.02 2.41 16 29 N -0.30 -4.66 12.44 32.42 0.40 -4.26 16 30 N -0.49 -5.30 7.45 32.62 0.24 -5.06 16 31 H 0.44 3.06 8.96 -182.34 -1.63 1.42 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.19 7.94 -51.93 -0.41 0.78 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.71 6.73 -51.93 -0.35 1.37 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.13 3.11 6.04 -52.48 -0.32 2.79 16 41 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 42 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.10 1.83 8.06 -52.48 -0.42 1.41 16 44 H 0.11 2.47 7.01 -52.49 -0.37 2.10 16 45 H 0.06 1.30 7.82 -51.93 -0.41 0.89 16 46 H 0.07 1.38 8.04 -51.93 -0.42 0.97 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -33.82 376.15 -11.69 -45.51 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.68 Total: 7.64 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -5.33 Total: -5.53 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.59 Total: -53.25 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.08 Total: -15.03 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.82 -11.69 -45.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362763362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.378 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds