Wall clock time and date at job start Sat Apr 11 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30833 * 125.96490 * 2 1 4 4 C 1.33242 * 109.82884 * 180.12204 * 3 2 1 5 5 C 1.50694 * 125.52228 * 179.85838 * 4 3 2 6 6 H 1.08994 * 110.89271 * 357.29138 * 5 4 3 7 7 C 1.55154 * 111.00532 * 121.17435 * 5 4 3 8 8 C 1.54322 * 103.10365 * 153.52382 * 7 5 4 9 9 N 1.47318 * 107.12111 * 338.02046 * 8 7 5 10 10 C 1.34773 * 125.61762 * 178.81400 * 9 8 7 11 11 O 1.21281 * 120.00163 * 179.86549 * 10 9 8 12 12 C 1.50706 * 119.99954 * 359.86782 * 10 9 8 13 13 H 1.08996 * 109.47150 * 300.00021 * 12 10 9 14 14 C 1.50704 * 109.47005 * 59.99999 * 12 10 9 15 15 H 1.08002 * 119.99561 * 235.37090 * 14 12 10 16 16 C 1.37875 * 120.00182 * 55.36176 * 14 12 10 17 17 N 1.31513 * 120.00309 * 1.98662 * 16 14 12 18 18 Si 1.86798 * 119.99840 * 181.98328 * 16 14 12 19 19 H 1.48494 * 109.47462 * 60.00171 * 18 16 14 20 20 H 1.48506 * 109.47283 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47151 * 299.99789 * 18 16 14 22 22 C 1.50702 * 109.47173 * 179.97438 * 12 10 9 23 23 C 1.38235 * 120.00018 * 226.92106 * 22 12 10 24 24 C 1.38236 * 120.00011 * 179.74570 * 23 22 12 25 25 C 1.38236 * 119.99606 * 0.52081 * 24 23 22 26 26 C 1.38237 * 120.00070 * 359.75366 * 25 24 23 27 27 C 1.38231 * 120.00254 * 359.97188 * 26 25 24 28 28 C 1.47421 * 108.73447 * 358.70609 * 9 8 7 29 29 N 1.30712 * 108.94659 * 359.59718 * 4 3 2 30 30 N 1.34436 * 125.95812 * 179.67504 * 2 1 3 31 31 H 0.96997 * 126.82602 * 0.06951 * 30 2 1 32 32 H 1.08998 * 109.47117 * 270.30430 * 1 2 3 33 33 H 1.08999 * 109.47119 * 30.30390 * 1 2 3 34 34 H 1.09000 * 109.47225 * 150.29928 * 1 2 3 35 35 H 1.09004 * 110.72233 * 271.97350 * 7 5 4 36 36 H 1.09005 * 110.72313 * 35.07116 * 7 5 4 37 37 H 1.08998 * 109.88477 * 97.31933 * 8 7 5 38 38 H 1.09003 * 109.88261 * 218.48285 * 8 7 5 39 39 H 0.96995 * 120.00250 * 180.02562 * 17 16 14 40 40 H 1.08004 * 119.99785 * 359.97438 * 23 22 12 41 41 H 1.07996 * 120.00272 * 180.28645 * 24 23 22 42 42 H 1.08001 * 119.99603 * 179.76481 * 25 24 23 43 43 H 1.08003 * 119.99468 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.00391 * 180.02562 * 27 26 25 45 45 H 1.09006 * 110.36363 * 265.43929 * 28 9 8 46 46 H 1.08997 * 110.46361 * 143.16759 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6886 -0.0027 5 6 4.7372 1.6235 -0.0066 6 1 4.4110 2.6623 -0.0551 7 6 5.6415 1.3818 1.2308 8 6 7.0295 1.8517 0.7469 9 7 7.0166 1.7982 -0.7253 10 6 8.0360 2.1523 -1.5325 11 8 7.9151 2.0647 -2.7361 12 6 9.3263 2.6572 -0.9396 13 1 9.1301 3.5552 -0.3538 14 6 9.9190 1.5959 -0.0489 15 1 10.1523 1.8236 0.9808 16 6 10.1632 0.3342 -0.5483 17 7 9.9155 0.0678 -1.8121 18 14 10.8461 -0.9970 0.5702 19 1 9.9031 -1.2320 1.6930 20 1 11.0186 -2.2530 -0.2031 21 1 12.1602 -0.5642 1.1098 22 6 10.2953 2.9812 -2.0474 23 6 11.6032 2.5399 -1.9727 24 6 12.4907 2.8326 -2.9913 25 6 12.0730 3.5758 -4.0795 26 6 10.7666 4.0219 -4.1515 27 6 9.8777 3.7244 -3.1356 28 6 5.7055 1.2908 -1.1691 29 7 3.6194 -0.6169 0.0043 30 7 2.2964 -1.0882 0.0062 31 1 2.0093 -2.0147 0.0105 32 1 -0.3633 0.0055 1.0276 33 1 -0.3633 0.8872 -0.5185 34 1 -0.3634 -0.8926 -0.5092 35 1 5.3051 1.9806 2.0772 36 1 5.6622 0.3239 1.4927 37 1 7.2112 2.8740 1.0786 38 1 7.8022 1.1899 1.1383 39 1 10.0870 -0.8199 -2.1634 40 1 11.9307 1.9633 -1.1202 41 1 13.5113 2.4839 -2.9352 42 1 12.7674 3.8077 -4.8735 43 1 10.4405 4.6029 -5.0015 44 1 8.8569 4.0725 -3.1920 45 1 5.7501 0.2135 -1.3292 46 1 5.3903 1.7965 -2.0818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362763362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:14 Heat of formation + Delta-G solvation = 60.484364 kcal Electronic energy + Delta-G solvation = -29634.334487 eV Core-core repulsion = 25717.763603 eV Total energy + Delta-G solvation = -3916.570884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -43.22280 -40.93373 -39.56814 -38.02390 -35.51967 -34.41121 -33.38079 -32.65608 -31.96199 -31.33729 -30.13568 -29.08816 -28.51044 -26.14238 -24.78327 -23.35765 -22.94711 -22.06561 -21.88645 -20.80849 -20.05587 -19.02744 -18.66629 -17.49426 -17.10840 -16.88151 -16.69392 -16.66803 -16.08449 -15.42020 -15.33714 -15.24258 -14.83053 -14.47671 -14.37107 -14.09404 -13.96701 -13.79999 -13.71070 -13.61459 -13.43798 -13.18297 -12.98306 -12.80714 -12.70068 -12.57877 -12.52408 -12.39761 -12.17080 -11.78607 -11.73723 -11.40799 -11.16781 -11.10268 -11.07735 -10.60168 -10.48473 -10.17527 -9.37157 -9.24882 -9.08751 -8.04982 -6.22335 0.55333 0.88771 0.94407 1.42364 1.44636 1.49939 1.69490 1.73710 2.25431 2.40047 2.52790 3.03183 3.22724 3.34146 3.47817 3.62319 3.82270 3.88417 4.17899 4.34314 4.36684 4.37936 4.41070 4.50361 4.55419 4.66013 4.71847 4.73628 4.78853 4.86381 4.99101 5.02929 5.06071 5.07179 5.13208 5.18255 5.24433 5.30075 5.33623 5.47329 5.55404 5.71279 5.76631 5.90735 5.96799 5.99641 6.20314 6.44316 6.54387 6.77013 7.03573 7.05526 7.43990 7.85608 8.94109 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015154 B = 0.003269 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.235095 B = 8563.645431 C = 9677.891117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.287 3.713 3 N -0.567 5.567 4 C 0.237 3.763 5 C 0.001 3.999 6 H 0.122 0.878 7 C -0.106 4.106 8 C 0.112 3.888 9 N -0.620 5.620 10 C 0.563 3.437 11 O -0.588 6.588 12 C 0.056 3.944 13 H 0.068 0.932 14 C -0.523 4.523 15 H 0.076 0.924 16 C 0.040 3.960 17 N -0.877 5.877 18 Si 0.934 3.066 19 H -0.267 1.267 20 H -0.301 1.301 21 H -0.264 1.264 22 C -0.038 4.038 23 C -0.085 4.085 24 C -0.151 4.151 25 C -0.141 4.141 26 C -0.147 4.147 27 C -0.119 4.119 28 C 0.130 3.870 29 N -0.342 5.342 30 N -0.477 5.477 31 H 0.455 0.545 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.253 0.747 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.138 0.862 43 H 0.129 0.871 44 H 0.097 0.903 45 H 0.036 0.964 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.450 1.036 6.734 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.010 3.990 3 N -0.297 5.297 4 C -0.046 4.046 5 C -0.021 4.021 6 H 0.140 0.860 7 C -0.145 4.145 8 C -0.011 4.011 9 N -0.355 5.355 10 C 0.355 3.645 11 O -0.468 6.468 12 C 0.035 3.965 13 H 0.086 0.914 14 C -0.560 4.560 15 H 0.094 0.906 16 C -0.165 4.165 17 N -0.511 5.511 18 Si 0.761 3.239 19 H -0.191 1.191 20 H -0.228 1.228 21 H -0.188 1.188 22 C -0.039 4.039 23 C -0.103 4.103 24 C -0.169 4.169 25 C -0.159 4.159 26 C -0.165 4.165 27 C -0.137 4.137 28 C 0.005 3.995 29 N -0.172 5.172 30 N -0.197 5.197 31 H 0.303 0.697 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.131 0.869 41 H 0.145 0.855 42 H 0.156 0.844 43 H 0.147 0.853 44 H 0.115 0.885 45 H 0.055 0.945 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.868 0.824 5.913 16.022 hybrid contribution 0.133 -2.051 0.039 2.056 sum -14.735 -1.227 5.952 15.939 Atomic orbital electron populations 1.20662 0.79691 1.06560 1.06248 1.25358 0.98372 0.81884 0.93412 1.70343 1.01119 1.31219 1.27057 1.23784 0.93170 0.89904 0.97767 1.20555 0.87784 0.97590 0.96130 0.86020 1.22701 0.92417 1.02560 0.96852 1.22126 0.97370 1.02296 0.79263 1.48308 1.12986 1.66319 1.07858 1.20964 0.83579 0.74800 0.85178 1.90501 1.82139 1.57137 1.17024 1.17923 0.88583 0.96797 0.93181 0.91388 1.20795 1.43388 0.94706 0.97157 0.90595 1.25560 0.95303 1.00216 0.95374 1.70240 1.46047 1.20892 1.13922 0.85963 0.79777 0.78827 0.79367 1.19145 1.22810 1.18849 1.19956 0.94741 0.93635 0.95530 1.21123 0.93377 0.97033 0.98753 1.21316 0.99867 1.00571 0.95195 1.21179 0.96179 0.99874 0.98669 1.21186 0.94220 1.02220 0.98866 1.21036 0.98171 0.99429 0.95084 1.21816 0.83420 0.97536 0.96722 1.78002 0.98739 1.12792 1.27620 1.47952 1.03191 1.11113 1.57416 0.69681 0.86939 0.88021 0.87044 0.86708 0.91447 0.90062 0.91296 0.93788 0.86865 0.85511 0.84383 0.85313 0.88491 0.94528 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.51 71.24 0.75 0.25 16 2 C 0.29 5.50 8.24 138.22 1.14 6.63 16 3 N -0.57 -15.38 11.19 -179.73 -2.01 -17.39 16 4 C 0.24 7.24 6.83 138.63 0.95 8.19 16 5 C 0.00 0.03 3.58 -10.15 -0.04 -0.01 16 6 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 7 C -0.11 -3.01 6.40 31.78 0.20 -2.81 16 8 C 0.11 3.89 6.03 86.67 0.52 4.42 16 9 N -0.62 -26.85 3.33 -811.04 -2.70 -29.55 16 10 C 0.56 28.61 5.52 87.66 0.48 29.10 16 11 O -0.59 -34.17 14.21 -3.03 -0.04 -34.21 16 12 C 0.06 2.74 2.32 -13.03 -0.03 2.71 16 13 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 14 C -0.52 -25.66 5.12 25.60 0.13 -25.52 16 15 H 0.08 3.51 7.81 -2.91 -0.02 3.49 16 16 C 0.04 2.04 4.00 84.65 0.34 2.38 16 17 N -0.88 -50.43 10.90 21.45 0.23 -50.20 16 18 Si 0.93 41.60 29.54 68.60 2.03 43.62 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 20 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 22 C -0.04 -1.87 4.51 -19.87 -0.09 -1.96 16 23 C -0.08 -4.06 8.20 22.27 0.18 -3.87 16 24 C -0.15 -6.28 10.05 22.27 0.22 -6.06 16 25 C -0.14 -5.41 10.05 22.27 0.22 -5.19 16 26 C -0.15 -6.02 10.05 22.27 0.22 -5.80 16 27 C -0.12 -5.63 8.21 22.27 0.18 -5.44 16 28 C 0.13 5.17 6.36 86.86 0.55 5.73 16 29 N -0.34 -10.50 12.44 -51.34 -0.64 -11.14 16 30 N -0.48 -9.75 7.45 -50.70 -0.38 -10.13 16 31 H 0.45 5.58 8.96 -213.10 -1.91 3.67 16 32 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.07 2.06 7.94 -2.38 -0.02 2.04 16 37 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.07 2.68 6.73 -2.39 -0.02 2.67 16 39 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.11 5.62 6.04 -2.91 -0.02 5.61 16 41 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 43 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.10 4.67 7.01 -2.91 -0.02 4.64 16 45 H 0.04 1.63 7.82 -2.38 -0.02 1.61 16 46 H 0.06 2.35 8.04 -2.39 -0.02 2.33 16 Total: -1.00 -76.90 376.15 1.54 -75.37 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -0.90 Total: 30.88 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 5.95 Total: 2.75 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -5.49 Total: -118.41 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.04 Total: -34.21 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -76.90 1.54 -75.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362763362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.851 kcal (2) G-P(sol) polarization free energy of solvation -76.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds