Wall clock time and date at job start Sat Apr 11 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30831 * 125.96292 * 2 1 4 4 C 1.33239 * 109.82713 * 180.02562 * 3 2 1 5 5 C 1.50704 * 125.52413 * 180.02562 * 4 3 2 6 6 H 1.09006 * 110.88692 * 359.30005 * 5 4 3 7 7 C 1.55158 * 111.00619 * 235.41856 * 5 4 3 8 8 C 1.54370 * 102.92144 * 206.45274 * 7 5 4 9 9 N 1.47025 * 107.28735 * 22.13685 * 8 7 5 10 10 C 1.34777 * 125.64841 * 181.05588 * 9 8 7 11 11 O 1.21277 * 119.99865 * 180.02562 * 10 9 8 12 12 C 1.50702 * 119.99665 * 0.03853 * 10 9 8 13 13 H 1.09001 * 109.46701 * 60.00474 * 12 10 9 14 14 C 1.50697 * 109.47375 * 299.99905 * 12 10 9 15 15 H 1.07997 * 120.00259 * 325.18005 * 14 12 10 16 16 C 1.37882 * 119.99457 * 145.17572 * 14 12 10 17 17 N 1.31514 * 119.99455 * 184.98617 * 16 14 12 18 18 Si 1.86796 * 120.00224 * 4.98126 * 16 14 12 19 19 H 1.48509 * 109.46829 * 84.65996 * 18 16 14 20 20 H 1.48501 * 109.47312 * 204.65361 * 18 16 14 21 21 H 1.48499 * 109.47536 * 324.66067 * 18 16 14 22 22 C 1.50700 * 109.46784 * 179.97438 * 12 10 9 23 23 C 1.38231 * 120.00036 * 65.03867 * 22 12 10 24 24 C 1.38237 * 120.00191 * 179.74236 * 23 22 12 25 25 C 1.38234 * 119.99807 * 0.53023 * 24 23 22 26 26 C 1.38235 * 119.99867 * 359.74709 * 25 24 23 27 27 C 1.38234 * 120.00119 * 245.31126 * 22 12 10 28 28 C 1.47425 * 108.70320 * 1.09546 * 9 8 7 29 29 N 1.30707 * 108.95168 * 359.97438 * 4 3 2 30 30 N 1.34434 * 125.95720 * 179.69036 * 2 1 3 31 31 H 0.96994 * 126.82774 * 0.02562 * 30 2 1 32 32 H 1.09002 * 109.47133 * 90.00076 * 1 2 3 33 33 H 1.09000 * 109.46892 * 330.00302 * 1 2 3 34 34 H 1.09000 * 109.47311 * 210.00166 * 1 2 3 35 35 H 1.09006 * 110.71546 * 324.78772 * 7 5 4 36 36 H 1.09000 * 110.71662 * 88.05682 * 7 5 4 37 37 H 1.08991 * 109.84580 * 262.73084 * 8 7 5 38 38 H 1.08999 * 110.02989 * 141.64352 * 8 7 5 39 39 H 0.97006 * 119.99631 * 179.97438 * 17 16 14 40 40 H 1.08005 * 120.00151 * 359.97438 * 23 22 12 41 41 H 1.07994 * 120.00303 * 180.29454 * 24 23 22 42 42 H 1.07995 * 120.00116 * 179.76738 * 25 24 23 43 43 H 1.08007 * 120.00188 * 180.02562 * 26 25 24 44 44 H 1.08003 * 120.00113 * 0.02562 * 27 22 12 45 45 H 1.09003 * 110.36162 * 217.03359 * 28 9 8 46 46 H 1.08993 * 110.37215 * 94.71132 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6886 -0.0006 5 6 4.7373 1.6235 -0.0002 6 1 4.4104 2.6633 -0.0118 7 6 5.6832 1.3245 -1.1932 8 6 7.0525 1.8197 -0.6805 9 7 6.9904 1.8326 0.7884 10 6 7.9822 2.2234 1.6131 11 8 7.8197 2.1917 2.8145 12 6 9.2930 2.7001 1.0423 13 1 9.1186 3.5702 0.4093 14 6 9.9140 1.5987 0.2224 15 1 9.7944 0.5684 0.5232 16 6 10.6349 1.9065 -0.9120 17 7 11.0935 0.9433 -1.6810 18 14 10.9599 3.6914 -1.3565 19 1 12.1605 4.1725 -0.6266 20 1 11.1920 3.8031 -2.8190 21 1 9.7858 4.5178 -0.9771 22 6 10.2234 3.0758 2.1666 23 6 10.6747 2.1070 3.0433 24 6 11.5325 2.4507 4.0714 25 6 11.9302 3.7652 4.2294 26 6 11.4743 4.7349 3.3562 27 6 10.6212 4.3902 2.3246 28 6 5.6640 1.3463 1.2098 29 7 3.6195 -0.6168 -0.0004 30 7 2.2964 -1.0882 0.0059 31 1 2.0093 -2.0146 0.0105 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 0.8900 0.5138 34 1 -0.3634 -0.8900 0.5139 35 1 5.7138 0.2552 -1.4025 36 1 5.3768 1.8831 -2.0776 37 1 7.2449 2.8261 -1.0522 38 1 7.8416 1.1450 -1.0122 39 1 11.6004 1.1598 -2.4793 40 1 10.3602 1.0808 2.9227 41 1 11.8889 1.6931 4.7535 42 1 12.5973 4.0344 5.0349 43 1 11.7854 5.7619 3.4793 44 1 10.2647 5.1480 1.6425 45 1 5.3191 1.8961 2.0855 46 1 5.7014 0.2779 1.4221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362763364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:21 Heat of formation + Delta-G solvation = 76.394585 kcal Electronic energy + Delta-G solvation = -29237.776774 eV Core-core repulsion = 25321.895809 eV Total energy + Delta-G solvation = -3915.880965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.31641 -39.56698 -38.28271 -36.75556 -33.77110 -33.35856 -32.53918 -31.49561 -30.85835 -30.09042 -28.89678 -28.14317 -27.44144 -24.42983 -23.16408 -22.18640 -21.79280 -21.13173 -20.65051 -19.70594 -18.43006 -18.13794 -17.16174 -16.32970 -16.03301 -15.85234 -15.65972 -14.74455 -14.61322 -14.46770 -14.23389 -13.59884 -13.54533 -13.37330 -13.31753 -13.11469 -12.95334 -12.67367 -12.61248 -12.40013 -12.05063 -12.01126 -11.89746 -11.72946 -11.46239 -11.15413 -11.06198 -10.90916 -10.55742 -10.42910 -10.19080 -10.14643 -10.11749 -9.88895 -9.54114 -9.49986 -8.94308 -8.64573 -8.09519 -7.90257 -7.76847 -6.28068 -4.29925 1.42047 2.19409 2.25790 2.45105 2.69433 3.16837 3.24700 3.29939 3.55692 3.61823 3.94040 4.24331 4.40479 4.56448 4.65259 4.81901 4.90801 5.00557 5.03000 5.10204 5.36195 5.39452 5.58727 5.62440 5.63852 5.69904 5.74392 5.88846 5.95584 6.00112 6.11328 6.18102 6.20626 6.29955 6.33838 6.37231 6.43961 6.53105 6.69769 6.79073 6.86285 6.89873 7.04606 7.21271 7.29565 7.31818 7.63415 7.84081 7.96163 8.20781 8.32557 8.72183 9.11452 9.29911 10.82605 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.003106 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.287094 B = 9012.165485 C =10086.486280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.277 3.723 3 N -0.537 5.537 4 C 0.248 3.752 5 C -0.014 4.014 6 H 0.110 0.890 7 C -0.121 4.121 8 C 0.107 3.893 9 N -0.611 5.611 10 C 0.551 3.449 11 O -0.561 6.561 12 C 0.023 3.977 13 H 0.073 0.927 14 C -0.504 4.504 15 H 0.082 0.918 16 C 0.087 3.913 17 N -0.882 5.882 18 Si 0.861 3.139 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.261 1.261 22 C -0.028 4.028 23 C -0.072 4.072 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.129 4.129 27 C -0.136 4.136 28 C 0.122 3.878 29 N -0.302 5.302 30 N -0.485 5.485 31 H 0.439 0.561 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.268 0.732 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.075 0.925 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.685 -0.236 0.800 16.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 N -0.266 5.266 4 C -0.035 4.035 5 C -0.036 4.036 6 H 0.128 0.872 7 C -0.160 4.160 8 C -0.016 4.016 9 N -0.345 5.345 10 C 0.343 3.657 11 O -0.440 6.440 12 C 0.002 3.998 13 H 0.091 0.909 14 C -0.542 4.542 15 H 0.100 0.900 16 C -0.117 4.117 17 N -0.518 5.518 18 Si 0.688 3.312 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.186 1.186 22 C -0.029 4.029 23 C -0.091 4.091 24 C -0.147 4.147 25 C -0.161 4.161 26 C -0.147 4.147 27 C -0.155 4.155 28 C -0.003 4.003 29 N -0.131 5.131 30 N -0.203 5.203 31 H 0.284 0.716 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.123 0.877 39 H 0.079 0.921 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.093 0.907 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.998 -0.301 1.303 16.054 hybrid contribution -0.078 0.151 -0.457 0.488 sum -16.077 -0.150 0.846 16.100 Atomic orbital electron populations 1.20378 0.83733 1.04951 1.04485 1.24395 0.96588 0.82986 0.96133 1.70361 1.01430 1.29517 1.25326 1.23853 0.92619 0.89893 0.97104 1.20729 0.88263 0.96982 0.97615 0.87209 1.22804 0.93787 1.02848 0.96555 1.22137 0.97162 1.02438 0.79881 1.48208 1.13015 1.66019 1.07250 1.20901 0.84284 0.75180 0.85346 1.90600 1.81879 1.56338 1.15190 1.18542 0.88448 0.99358 0.93467 0.90941 1.20471 1.33596 0.92672 1.07418 0.89970 1.24927 0.94517 0.96874 0.95416 1.69865 1.35582 1.31997 1.14340 0.87092 0.80096 0.86123 0.77868 1.19191 1.21076 1.18631 1.20076 0.96349 0.92118 0.94329 1.20848 0.95361 0.99483 0.93370 1.21028 0.99037 0.95951 0.98718 1.20855 1.01800 0.93575 0.99919 1.20878 0.99111 0.98527 0.96166 1.20968 0.99976 0.95867 0.98657 1.22016 0.82663 0.99922 0.95658 1.78090 0.96100 1.12389 1.26489 1.48031 1.04459 1.09978 1.57874 0.71561 0.89046 0.88367 0.89948 0.89974 0.90010 0.91943 0.87741 0.92140 0.86520 0.87146 0.87351 0.87275 0.87424 0.90661 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.28 2.73 8.24 -155.69 -1.28 1.45 16 3 N -0.54 -7.21 11.19 -8.16 -0.09 -7.30 16 4 C 0.25 3.60 6.82 -156.86 -1.07 2.53 16 5 C -0.01 -0.21 3.57 -89.62 -0.32 -0.53 16 6 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 7 C -0.12 -1.75 6.41 -24.87 -0.16 -1.91 16 8 C 0.11 1.90 6.02 -3.04 -0.02 1.88 16 9 N -0.61 -12.03 3.32 -170.49 -0.57 -12.60 16 10 C 0.55 12.57 7.10 -10.98 -0.08 12.49 16 11 O -0.56 -13.95 15.63 5.56 0.09 -13.87 16 12 C 0.02 0.54 1.44 -94.08 -0.14 0.40 16 13 H 0.07 1.65 4.89 -51.93 -0.25 1.40 16 14 C -0.50 -12.86 6.06 -34.44 -0.21 -13.06 16 15 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 16 C 0.09 2.27 5.47 -17.82 -0.10 2.18 16 17 N -0.88 -24.46 13.96 55.43 0.77 -23.69 16 18 Si 0.86 19.81 27.17 -169.99 -4.62 15.19 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.26 -5.60 6.06 56.52 0.34 -5.26 16 22 C -0.03 -0.63 4.08 -104.63 -0.43 -1.06 16 23 C -0.07 -1.62 8.25 -39.58 -0.33 -1.95 16 24 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 25 C -0.14 -2.57 10.05 -39.58 -0.40 -2.97 16 26 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 27 C -0.14 -2.84 9.45 -39.58 -0.37 -3.22 16 28 C 0.12 2.09 6.36 -2.53 -0.02 2.08 16 29 N -0.30 -4.30 12.44 32.42 0.40 -3.90 16 30 N -0.49 -4.84 7.45 32.62 0.24 -4.60 16 31 H 0.44 2.67 8.96 -182.34 -1.63 1.03 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.08 1.24 7.87 -51.93 -0.41 0.83 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.10 2.15 6.70 -51.93 -0.35 1.80 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.12 2.71 7.93 -52.48 -0.42 2.29 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.11 2.08 7.95 -52.48 -0.42 1.66 16 45 H 0.07 1.31 8.04 -51.93 -0.42 0.90 16 46 H 0.07 1.22 7.89 -51.93 -0.41 0.81 16 LS Contribution 380.98 15.07 5.74 5.74 Total: -1.00 -33.40 380.98 -11.08 -44.48 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.73 Total: 7.88 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -5.33 Total: -7.35 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.76 Total: -52.09 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.62 Total: 15.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.40 -11.08 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362763364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.878 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds