Wall clock time and date at job start Sat Apr 11 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30830 * 125.96250 * 2 1 4 4 C 1.33248 * 109.82879 * 180.12571 * 3 2 1 5 5 C 1.50701 * 125.52547 * 179.85385 * 4 3 2 6 6 H 1.09003 * 110.91533 * 3.62020 * 5 4 3 7 7 C 1.55276 * 111.09896 * 127.53050 * 5 4 3 8 8 C 1.54315 * 103.00896 * 153.45047 * 7 5 4 9 9 N 1.47025 * 107.27069 * 337.88221 * 8 7 5 10 10 C 1.34777 * 125.64698 * 178.96059 * 9 8 7 11 11 O 1.21283 * 119.99788 * 179.97438 * 10 9 8 12 12 C 1.50694 * 120.00388 * 359.97438 * 10 9 8 13 13 H 1.09005 * 109.46798 * 60.00250 * 12 10 9 14 14 C 1.50695 * 109.47356 * 300.00245 * 12 10 9 15 15 H 1.08006 * 119.99959 * 325.17313 * 14 12 10 16 16 C 1.37881 * 120.00469 * 145.17469 * 14 12 10 17 17 N 1.31505 * 120.00344 * 184.98155 * 16 14 12 18 18 Si 1.86801 * 119.99748 * 4.98459 * 16 14 12 19 19 H 1.48502 * 109.47114 * 84.65094 * 18 16 14 20 20 H 1.48493 * 109.47003 * 204.65352 * 18 16 14 21 21 H 1.48501 * 109.46996 * 324.65254 * 18 16 14 22 22 C 1.50696 * 109.47206 * 179.97438 * 12 10 9 23 23 C 1.38231 * 120.00049 * 65.03950 * 22 12 10 24 24 C 1.38235 * 120.00433 * 179.78743 * 23 22 12 25 25 C 1.38235 * 119.99681 * 0.46027 * 24 23 22 26 26 C 1.38242 * 119.99995 * 359.77129 * 25 24 23 27 27 C 1.38230 * 120.00011 * 0.02562 * 26 25 24 28 28 C 1.47422 * 108.70214 * 358.94211 * 9 8 7 29 29 N 1.30711 * 108.94487 * 359.58640 * 4 3 2 30 30 N 1.34438 * 125.96114 * 179.67263 * 2 1 3 31 31 H 0.97000 * 126.81746 * 0.06954 * 30 2 1 32 32 H 1.08997 * 109.46809 * 270.30604 * 1 2 3 33 33 H 1.09002 * 109.46658 * 30.30597 * 1 2 3 34 34 H 1.08997 * 109.47267 * 150.30435 * 1 2 3 35 35 H 1.08998 * 110.62542 * 35.09255 * 7 5 4 36 36 H 1.09011 * 110.90839 * 271.93987 * 7 5 4 37 37 H 1.09009 * 109.88308 * 218.47016 * 8 7 5 38 38 H 1.09000 * 109.88747 * 97.30536 * 8 7 5 39 39 H 0.96996 * 120.00556 * 180.02562 * 17 16 14 40 40 H 1.08008 * 119.99853 * 359.97438 * 23 22 12 41 41 H 1.07994 * 120.00643 * 180.25336 * 24 23 22 42 42 H 1.07997 * 120.00427 * 179.78920 * 25 24 23 43 43 H 1.08005 * 120.00042 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.00362 * 179.97438 * 27 26 25 45 45 H 1.09001 * 110.36742 * 142.96103 * 28 9 8 46 46 H 1.08993 * 110.37003 * 265.17941 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6887 -0.0028 5 6 4.7373 1.6235 -0.0068 6 1 4.4123 2.6620 0.0571 7 6 5.7260 1.2794 1.1400 8 6 7.0771 1.7933 0.5997 9 7 6.9637 1.8627 -0.8645 10 6 7.9268 2.2843 -1.7078 11 8 7.7222 2.2990 -2.9032 12 6 9.2577 2.7375 -1.1656 13 1 9.7257 1.9180 -0.6199 14 6 9.0503 3.9058 -0.2367 15 1 8.2723 4.6266 -0.4409 16 6 9.8537 4.0547 0.8740 17 7 9.6110 5.0170 1.7369 18 14 11.2868 2.8894 1.1531 19 1 12.4713 3.3720 0.3985 20 1 11.6092 2.8395 2.6017 21 1 10.9190 1.5304 0.6807 22 6 10.1494 3.1544 -2.3066 23 6 9.8141 4.2489 -3.0815 24 6 10.6343 4.6341 -4.1255 25 6 11.7849 3.9190 -4.4005 26 6 12.1178 2.8215 -3.6286 27 6 11.2998 2.4389 -2.5820 28 6 5.6221 1.3945 -1.2575 29 7 3.6195 -0.6168 0.0044 30 7 2.2965 -1.0881 0.0062 31 1 2.0093 -2.0146 0.0106 32 1 -0.3633 0.0055 1.0276 33 1 -0.3633 0.8873 -0.5186 34 1 -0.3634 -0.8927 -0.5091 35 1 5.7615 0.2028 1.3063 36 1 5.4541 1.8011 2.0577 37 1 7.8740 1.1033 0.8774 38 1 7.2849 2.7844 1.0029 39 1 10.1764 5.1219 2.5180 40 1 8.9128 4.8050 -2.8694 41 1 10.3745 5.4916 -4.7283 42 1 12.4240 4.2178 -5.2182 43 1 13.0166 2.2626 -3.8437 44 1 11.5596 1.5814 -1.9792 45 1 5.2480 1.9779 -2.0987 46 1 5.6499 0.3354 -1.5137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362763366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:25 Heat of formation + Delta-G solvation = 76.359148 kcal Electronic energy + Delta-G solvation = -29243.530368 eV Core-core repulsion = 25327.647866 eV Total energy + Delta-G solvation = -3915.882501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.31704 -39.56347 -38.27675 -36.74588 -33.77074 -33.35935 -32.54098 -31.49754 -30.84923 -30.09080 -28.88558 -28.14899 -27.45057 -24.40997 -23.16864 -22.19081 -21.79321 -21.12776 -20.64860 -19.70221 -18.42523 -18.14531 -17.16157 -16.28363 -16.08705 -15.85375 -15.61529 -14.74200 -14.56912 -14.45763 -14.32805 -13.64822 -13.54187 -13.37985 -13.29784 -13.00700 -12.95185 -12.67357 -12.63356 -12.29507 -12.11546 -12.03344 -11.92563 -11.75929 -11.38495 -11.14501 -11.07681 -10.89194 -10.55735 -10.42910 -10.19010 -10.14449 -10.11313 -9.88962 -9.54497 -9.49822 -8.94961 -8.64262 -8.09558 -7.90225 -7.76922 -6.28267 -4.30007 1.40914 2.19395 2.25778 2.43876 2.70065 3.17030 3.24654 3.30003 3.52335 3.68295 3.91965 4.24333 4.40871 4.56655 4.65655 4.83439 4.91843 5.01671 5.03110 5.11729 5.39347 5.42063 5.58638 5.62122 5.64115 5.72073 5.75262 5.89510 5.97923 6.00389 6.10600 6.18813 6.22726 6.30255 6.34048 6.36872 6.40176 6.52914 6.69386 6.79085 6.85414 6.89880 7.05787 7.21265 7.29578 7.31739 7.63372 7.84092 7.96538 8.20687 8.32445 8.71859 9.11372 9.29832 10.82293 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014821 B = 0.003109 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.728940 B = 9005.009492 C =10077.670449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.278 3.722 3 N -0.535 5.535 4 C 0.251 3.749 5 C -0.013 4.013 6 H 0.114 0.886 7 C -0.121 4.121 8 C 0.105 3.895 9 N -0.611 5.611 10 C 0.551 3.449 11 O -0.561 6.561 12 C 0.023 3.977 13 H 0.072 0.928 14 C -0.504 4.504 15 H 0.083 0.917 16 C 0.088 3.912 17 N -0.882 5.882 18 Si 0.860 3.140 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.262 1.262 22 C -0.028 4.028 23 C -0.072 4.072 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.129 4.129 27 C -0.137 4.137 28 C 0.123 3.877 29 N -0.308 5.308 30 N -0.486 5.486 31 H 0.438 0.562 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.269 0.731 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.076 0.924 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.773 -10.742 -1.093 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.000 4.000 3 N -0.264 5.264 4 C -0.032 4.032 5 C -0.035 4.035 6 H 0.132 0.868 7 C -0.160 4.160 8 C -0.018 4.018 9 N -0.345 5.345 10 C 0.343 3.657 11 O -0.440 6.440 12 C 0.002 3.998 13 H 0.090 0.910 14 C -0.542 4.542 15 H 0.101 0.899 16 C -0.117 4.117 17 N -0.517 5.517 18 Si 0.687 3.313 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.187 1.187 22 C -0.029 4.029 23 C -0.090 4.090 24 C -0.147 4.147 25 C -0.162 4.162 26 C -0.147 4.147 27 C -0.155 4.155 28 C -0.002 4.002 29 N -0.136 5.136 30 N -0.205 5.205 31 H 0.284 0.716 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.095 0.905 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.168 -10.617 -1.578 16.226 hybrid contribution 0.452 -1.242 0.379 1.375 sum -11.716 -11.859 -1.200 16.714 Atomic orbital electron populations 1.20382 0.83710 1.04964 1.04517 1.24415 0.96615 0.82944 0.96045 1.70387 1.01454 1.29457 1.25097 1.23883 0.92693 0.89804 0.96817 1.20738 0.88166 0.97309 0.97244 0.86798 1.22796 0.93855 1.01964 0.97385 1.22166 0.95525 1.03972 0.80101 1.48209 1.13024 1.65718 1.07532 1.20898 0.85742 0.74110 0.84958 1.90602 1.81982 1.55731 1.15692 1.18543 0.88670 0.99132 0.93488 0.90993 1.20471 1.19302 1.08384 1.05998 0.89870 1.24916 0.96497 0.95127 0.95135 1.69851 1.38416 1.31527 1.11927 0.87106 0.84349 0.82171 0.77640 1.19187 1.21074 1.18696 1.20078 0.94645 0.93938 0.94216 1.20848 0.98660 0.95863 0.93662 1.21031 0.95459 0.99806 0.98433 1.20857 0.97879 0.97080 1.00336 1.20877 0.99370 0.97841 0.96608 1.20967 0.96176 1.00005 0.98345 1.21989 0.82847 0.99626 0.95718 1.78028 0.96206 1.12446 1.26927 1.48014 1.04460 1.09934 1.58055 0.71638 0.89028 0.88297 0.89973 0.90577 0.89676 0.91985 0.87571 0.92124 0.86465 0.87119 0.87352 0.87295 0.87466 0.90537 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.28 2.76 8.24 -155.69 -1.28 1.47 16 3 N -0.53 -7.36 11.19 -8.16 -0.09 -7.45 16 4 C 0.25 3.66 6.83 -156.85 -1.07 2.58 16 5 C -0.01 -0.19 3.58 -89.56 -0.32 -0.51 16 6 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 7 C -0.12 -1.76 6.42 -24.84 -0.16 -1.92 16 8 C 0.11 1.87 6.08 -3.07 -0.02 1.85 16 9 N -0.61 -12.03 3.32 -170.53 -0.57 -12.60 16 10 C 0.55 12.57 7.10 -10.99 -0.08 12.49 16 11 O -0.56 -13.94 15.63 5.55 0.09 -13.86 16 12 C 0.02 0.53 1.44 -94.08 -0.14 0.40 16 13 H 0.07 1.65 4.89 -51.93 -0.25 1.40 16 14 C -0.50 -12.75 6.02 -34.44 -0.21 -12.96 16 15 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 16 C 0.09 2.28 5.47 -17.82 -0.10 2.18 16 17 N -0.88 -24.25 13.96 55.43 0.77 -23.48 16 18 Si 0.86 19.82 27.17 -169.99 -4.62 15.20 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.26 -5.66 6.06 56.52 0.34 -5.32 16 22 C -0.03 -0.64 4.08 -104.62 -0.43 -1.06 16 23 C -0.07 -1.61 8.25 -39.59 -0.33 -1.94 16 24 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 25 C -0.14 -2.57 10.05 -39.58 -0.40 -2.97 16 26 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 27 C -0.14 -2.86 9.45 -39.58 -0.37 -3.23 16 28 C 0.12 2.11 6.36 -2.53 -0.02 2.09 16 29 N -0.31 -4.24 12.43 32.42 0.40 -3.84 16 30 N -0.49 -4.73 7.45 32.62 0.24 -4.49 16 31 H 0.44 2.50 8.96 -182.34 -1.63 0.87 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.08 1.07 7.80 -51.93 -0.40 0.66 16 36 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 37 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 38 H 0.11 2.14 6.58 -51.93 -0.34 1.80 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.12 2.69 7.93 -52.48 -0.42 2.28 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 43 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.11 2.09 7.95 -52.49 -0.42 1.67 16 45 H 0.08 1.37 8.04 -51.93 -0.42 0.96 16 46 H 0.06 1.10 7.96 -51.93 -0.41 0.68 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -33.12 380.89 -11.08 -44.20 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.72 Total: 7.75 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -5.33 Total: -7.18 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.76 Total: -51.86 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.09 Total: -13.86 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.62 Total: 15.20 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.12 -11.08 -44.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362763366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.563 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds