Wall clock time and date at job start Sat Apr 11 2020 06:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30830 * 125.96250 * 2 1 4 4 C 1.33248 * 109.82879 * 180.12571 * 3 2 1 5 5 C 1.50701 * 125.52547 * 179.85385 * 4 3 2 6 6 H 1.09003 * 110.91533 * 3.62020 * 5 4 3 7 7 C 1.55276 * 111.09896 * 127.53050 * 5 4 3 8 8 C 1.54315 * 103.00896 * 153.45047 * 7 5 4 9 9 N 1.47025 * 107.27069 * 337.88221 * 8 7 5 10 10 C 1.34777 * 125.64698 * 178.96059 * 9 8 7 11 11 O 1.21283 * 119.99788 * 179.97438 * 10 9 8 12 12 C 1.50694 * 120.00388 * 359.97438 * 10 9 8 13 13 H 1.09005 * 109.46798 * 60.00250 * 12 10 9 14 14 C 1.50695 * 109.47356 * 300.00245 * 12 10 9 15 15 H 1.08006 * 119.99959 * 325.17313 * 14 12 10 16 16 C 1.37881 * 120.00469 * 145.17469 * 14 12 10 17 17 N 1.31505 * 120.00344 * 184.98155 * 16 14 12 18 18 Si 1.86801 * 119.99748 * 4.98459 * 16 14 12 19 19 H 1.48502 * 109.47114 * 84.65094 * 18 16 14 20 20 H 1.48493 * 109.47003 * 204.65352 * 18 16 14 21 21 H 1.48501 * 109.46996 * 324.65254 * 18 16 14 22 22 C 1.50696 * 109.47206 * 179.97438 * 12 10 9 23 23 C 1.38231 * 120.00049 * 65.03950 * 22 12 10 24 24 C 1.38235 * 120.00433 * 179.78743 * 23 22 12 25 25 C 1.38235 * 119.99681 * 0.46027 * 24 23 22 26 26 C 1.38242 * 119.99995 * 359.77129 * 25 24 23 27 27 C 1.38230 * 120.00011 * 0.02562 * 26 25 24 28 28 C 1.47422 * 108.70214 * 358.94211 * 9 8 7 29 29 N 1.30711 * 108.94487 * 359.58640 * 4 3 2 30 30 N 1.34438 * 125.96114 * 179.67263 * 2 1 3 31 31 H 0.97000 * 126.81746 * 0.06954 * 30 2 1 32 32 H 1.08997 * 109.46809 * 270.30604 * 1 2 3 33 33 H 1.09002 * 109.46658 * 30.30597 * 1 2 3 34 34 H 1.08997 * 109.47267 * 150.30435 * 1 2 3 35 35 H 1.08998 * 110.62542 * 35.09255 * 7 5 4 36 36 H 1.09011 * 110.90839 * 271.93987 * 7 5 4 37 37 H 1.09009 * 109.88308 * 218.47016 * 8 7 5 38 38 H 1.09000 * 109.88747 * 97.30536 * 8 7 5 39 39 H 0.96996 * 120.00556 * 180.02562 * 17 16 14 40 40 H 1.08008 * 119.99853 * 359.97438 * 23 22 12 41 41 H 1.07994 * 120.00643 * 180.25336 * 24 23 22 42 42 H 1.07997 * 120.00427 * 179.78920 * 25 24 23 43 43 H 1.08005 * 120.00042 * 179.97438 * 26 25 24 44 44 H 1.07994 * 120.00362 * 179.97438 * 27 26 25 45 45 H 1.09001 * 110.36742 * 142.96103 * 28 9 8 46 46 H 1.08993 * 110.37003 * 265.17941 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5553 0.6887 -0.0028 5 6 4.7373 1.6235 -0.0068 6 1 4.4123 2.6620 0.0571 7 6 5.7260 1.2794 1.1400 8 6 7.0771 1.7933 0.5997 9 7 6.9637 1.8627 -0.8645 10 6 7.9268 2.2843 -1.7078 11 8 7.7222 2.2990 -2.9032 12 6 9.2577 2.7375 -1.1656 13 1 9.7257 1.9180 -0.6199 14 6 9.0503 3.9058 -0.2367 15 1 8.2723 4.6266 -0.4409 16 6 9.8537 4.0547 0.8740 17 7 9.6110 5.0170 1.7369 18 14 11.2868 2.8894 1.1531 19 1 12.4713 3.3720 0.3985 20 1 11.6092 2.8395 2.6017 21 1 10.9190 1.5304 0.6807 22 6 10.1494 3.1544 -2.3066 23 6 9.8141 4.2489 -3.0815 24 6 10.6343 4.6341 -4.1255 25 6 11.7849 3.9190 -4.4005 26 6 12.1178 2.8215 -3.6286 27 6 11.2998 2.4389 -2.5820 28 6 5.6221 1.3945 -1.2575 29 7 3.6195 -0.6168 0.0044 30 7 2.2965 -1.0881 0.0062 31 1 2.0093 -2.0146 0.0106 32 1 -0.3633 0.0055 1.0276 33 1 -0.3633 0.8873 -0.5186 34 1 -0.3634 -0.8927 -0.5091 35 1 5.7615 0.2028 1.3063 36 1 5.4541 1.8011 2.0577 37 1 7.8740 1.1033 0.8774 38 1 7.2849 2.7844 1.0029 39 1 10.1764 5.1219 2.5180 40 1 8.9128 4.8050 -2.8694 41 1 10.3745 5.4916 -4.7283 42 1 12.4240 4.2178 -5.2182 43 1 13.0166 2.2626 -3.8437 44 1 11.5596 1.5814 -1.9792 45 1 5.2480 1.9779 -2.0987 46 1 5.6499 0.3354 -1.5137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362763366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:24 Heat of formation + Delta-G solvation = 56.082924 kcal Electronic energy + Delta-G solvation = -29244.409611 eV Core-core repulsion = 25327.647866 eV Total energy + Delta-G solvation = -3916.761744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.23567 -41.22669 -39.78844 -38.33725 -35.58895 -34.49481 -33.38605 -33.33323 -32.12408 -31.63506 -30.25504 -29.39269 -28.63541 -26.09248 -24.73422 -23.51078 -23.34064 -22.25459 -21.97115 -20.87719 -20.06992 -19.16173 -19.00838 -18.01680 -17.59257 -17.03272 -16.70792 -16.38477 -16.30034 -15.92805 -15.46731 -15.14156 -14.97212 -14.63232 -14.54485 -14.33638 -14.17319 -13.89887 -13.83515 -13.73973 -13.65918 -13.50224 -13.33856 -12.92736 -12.82003 -12.73202 -12.57623 -12.40279 -12.03623 -11.94140 -11.83535 -11.62957 -11.40516 -11.10775 -11.09858 -10.88190 -10.58299 -10.44264 -9.65504 -9.55043 -9.37737 -8.31120 -6.36102 0.53094 0.63430 0.69857 1.32343 1.39994 1.43215 1.66019 1.71652 1.82308 2.14996 2.31364 2.93480 2.99355 3.14209 3.41673 3.51210 3.78518 3.79834 4.07686 4.14363 4.19318 4.21679 4.29810 4.33815 4.37156 4.38820 4.56451 4.59335 4.72040 4.73026 4.81381 4.83936 4.88516 4.93996 4.99293 5.06114 5.16533 5.21798 5.25915 5.30240 5.31697 5.40849 5.51395 5.69136 5.73521 5.95339 6.21144 6.22489 6.30180 6.56992 6.63852 7.05618 7.25395 7.32807 8.82988 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014821 B = 0.003109 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.728940 B = 9005.009492 C =10077.670449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.288 3.712 3 N -0.573 5.573 4 C 0.238 3.762 5 C -0.003 4.003 6 H 0.107 0.893 7 C -0.105 4.105 8 C 0.105 3.895 9 N -0.611 5.611 10 C 0.544 3.456 11 O -0.589 6.589 12 C 0.029 3.971 13 H 0.076 0.924 14 C -0.490 4.490 15 H 0.039 0.961 16 C 0.048 3.952 17 N -0.924 5.924 18 Si 0.910 3.090 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.239 1.239 22 C -0.059 4.059 23 C -0.103 4.103 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.125 4.125 27 C -0.153 4.153 28 C 0.126 3.874 29 N -0.331 5.331 30 N -0.473 5.473 31 H 0.457 0.543 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.270 0.730 40 H 0.089 0.911 41 H 0.135 0.865 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.119 0.881 45 H 0.062 0.938 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.559 -13.169 -1.643 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.011 3.989 3 N -0.303 5.303 4 C -0.045 4.045 5 C -0.024 4.024 6 H 0.125 0.875 7 C -0.143 4.143 8 C -0.017 4.017 9 N -0.344 5.344 10 C 0.335 3.665 11 O -0.470 6.470 12 C 0.008 3.992 13 H 0.093 0.907 14 C -0.528 4.528 15 H 0.057 0.943 16 C -0.153 4.153 17 N -0.561 5.561 18 Si 0.734 3.266 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.163 1.163 22 C -0.060 4.060 23 C -0.121 4.121 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.142 4.142 27 C -0.172 4.172 28 C 0.002 3.998 29 N -0.160 5.160 30 N -0.193 5.193 31 H 0.306 0.694 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.153 0.847 42 H 0.169 0.831 43 H 0.167 0.833 44 H 0.137 0.863 45 H 0.081 0.919 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.997 -13.093 -2.114 17.883 hybrid contribution 0.255 -0.475 0.450 0.702 sum -11.742 -13.568 -1.664 18.020 Atomic orbital electron populations 1.20663 0.79861 1.06577 1.06180 1.25293 0.98319 0.81871 0.93442 1.70353 1.01469 1.31561 1.26953 1.23583 0.92825 0.89952 0.98161 1.20512 0.88508 0.97458 0.95964 0.87506 1.22702 0.91441 1.02662 0.97542 1.22178 0.97943 1.02709 0.78911 1.48270 1.13439 1.64434 1.08214 1.20899 0.86369 0.74318 0.84921 1.90562 1.82557 1.57112 1.16762 1.18433 0.89276 0.97959 0.93538 0.90665 1.20278 1.17903 1.08086 1.06542 0.94297 1.25493 0.98625 0.96497 0.94686 1.69964 1.39832 1.33606 1.12745 0.86295 0.81056 0.81497 0.77720 1.19498 1.20486 1.16294 1.20120 0.95773 0.95112 0.94949 1.20829 0.98955 0.96587 0.95778 1.21362 0.95541 1.00675 0.97464 1.21355 0.97227 0.96004 1.00760 1.21364 0.99917 0.97838 0.95115 1.21226 0.95850 1.00408 0.99667 1.22032 0.81932 0.99332 0.96522 1.77902 0.98651 1.12042 1.27427 1.47927 1.03133 1.11060 1.57203 0.69433 0.87105 0.88287 0.86737 0.89334 0.88122 0.91317 0.90435 0.92007 0.89258 0.84673 0.83089 0.83348 0.86308 0.91943 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.51 71.24 0.75 0.29 16 2 C 0.29 5.15 8.24 138.22 1.14 6.29 16 3 N -0.57 -15.42 11.19 -179.72 -2.01 -17.43 16 4 C 0.24 6.88 6.83 138.63 0.95 7.83 16 5 C 0.00 -0.08 3.58 -10.11 -0.04 -0.12 16 6 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 7 C -0.10 -3.05 6.42 31.82 0.20 -2.84 16 8 C 0.11 3.87 6.08 86.73 0.53 4.39 16 9 N -0.61 -25.20 3.32 -811.81 -2.70 -27.90 16 10 C 0.54 26.01 7.10 87.66 0.62 26.63 16 11 O -0.59 -30.68 15.63 -3.04 -0.05 -30.72 16 12 C 0.03 1.40 1.44 -13.04 -0.02 1.39 16 13 H 0.08 3.49 4.89 -2.38 -0.01 3.48 16 14 C -0.49 -26.24 6.02 25.60 0.15 -26.08 16 15 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 16 C 0.05 2.56 5.47 84.66 0.46 3.03 16 17 N -0.92 -52.91 13.96 21.45 0.30 -52.61 16 18 Si 0.91 40.84 27.17 68.60 1.86 42.71 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.24 -9.75 6.06 99.48 0.60 -9.14 16 22 C -0.06 -2.73 4.08 -19.87 -0.08 -2.81 16 23 C -0.10 -4.76 8.25 22.27 0.18 -4.58 16 24 C -0.13 -4.99 10.05 22.27 0.22 -4.77 16 25 C -0.14 -4.42 10.05 22.27 0.22 -4.19 16 26 C -0.12 -4.21 10.05 22.27 0.22 -3.98 16 27 C -0.15 -6.21 9.45 22.27 0.21 -6.00 16 28 C 0.13 4.50 6.36 86.86 0.55 5.05 16 29 N -0.33 -8.79 12.43 -51.33 -0.64 -9.43 16 30 N -0.47 -8.25 7.45 -50.70 -0.38 -8.63 16 31 H 0.46 4.02 8.96 -213.10 -1.91 2.11 16 32 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.09 2.40 7.80 -2.39 -0.02 2.38 16 36 H 0.10 2.63 8.14 -2.38 -0.02 2.61 16 37 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.08 3.33 6.58 -2.39 -0.02 3.31 16 39 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 40 H 0.09 4.47 7.93 -2.91 -0.02 4.44 16 41 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 42 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 43 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 44 H 0.12 4.40 7.95 -2.91 -0.02 4.38 16 45 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 46 H 0.07 2.40 7.96 -2.39 -0.02 2.38 16 Total: -1.00 -76.27 380.89 1.67 -74.60 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -1.00 Total: 29.89 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 6.29 Total: -0.48 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -5.42 Total: -115.99 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.05 Total: -30.72 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.86 Total: 42.71 kcal Total: -76.27 1.67 -74.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362763366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.680 kcal (2) G-P(sol) polarization free energy of solvation -76.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds