Wall clock time and date at job start Sat Apr 11 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30832 * 125.96161 * 2 1 4 4 C 1.33239 * 109.82896 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.53088 * 180.02562 * 4 3 2 6 6 H 1.09003 * 110.88179 * 357.57998 * 5 4 3 7 7 C 1.55153 * 111.00556 * 121.45337 * 5 4 3 8 8 C 1.54324 * 102.94515 * 153.58092 * 7 5 4 9 9 N 1.47025 * 107.26707 * 337.81160 * 8 7 5 10 10 C 1.34778 * 125.64442 * 178.91962 * 9 8 7 11 11 O 1.21280 * 119.99832 * 180.02562 * 10 9 8 12 12 C 1.50695 * 120.00128 * 0.02562 * 10 9 8 13 13 C 1.50708 * 109.47197 * 180.02562 * 12 10 9 14 14 C 1.37637 * 120.12536 * 264.99821 * 13 12 10 15 15 C 1.38614 * 120.24401 * 179.97438 * 14 13 12 16 16 C 1.38661 * 120.50164 * 0.02562 * 15 14 13 17 17 C 1.37590 * 120.24718 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12547 * 84.72640 * 13 12 10 19 19 C 1.41394 * 120.24169 * 359.97438 * 18 13 12 20 20 H 1.07996 * 120.00453 * 333.89534 * 19 18 13 21 21 C 1.39948 * 119.99733 * 153.89870 * 19 18 13 22 22 N 1.30820 * 120.00228 * 343.71371 * 21 19 18 23 23 Si 1.86798 * 120.00064 * 163.70925 * 21 19 18 24 24 H 1.48502 * 109.47252 * 90.00103 * 23 21 19 25 25 H 1.48502 * 109.47185 * 210.00164 * 23 21 19 26 26 H 1.48503 * 109.47056 * 329.99942 * 23 21 19 27 27 C 1.47423 * 108.70263 * 358.93532 * 9 8 7 28 28 N 1.30710 * 108.94892 * 0.02562 * 4 3 2 29 29 N 1.34432 * 125.95998 * 179.69325 * 2 1 3 30 30 H 0.96998 * 126.82000 * 0.02562 * 29 2 1 31 31 H 1.09008 * 109.46937 * 89.99886 * 1 2 3 32 32 H 1.09006 * 109.47111 * 330.00285 * 1 2 3 33 33 H 1.08994 * 109.47333 * 209.99829 * 1 2 3 34 34 H 1.09004 * 110.72654 * 271.94877 * 7 5 4 35 35 H 1.09003 * 110.71935 * 35.03911 * 7 5 4 36 36 H 1.09000 * 109.88247 * 97.22979 * 8 7 5 37 37 H 1.08999 * 109.88410 * 218.24127 * 8 7 5 38 38 H 1.09000 * 109.47423 * 299.99708 * 12 10 9 39 39 H 1.09007 * 109.47115 * 60.00030 * 12 10 9 40 40 H 1.08001 * 119.87851 * 0.02562 * 14 13 12 41 41 H 1.07995 * 119.74770 * 180.02562 * 15 14 13 42 42 H 1.07999 * 119.87137 * 180.02562 * 16 15 14 43 43 H 1.07997 * 120.12652 * 179.97438 * 17 16 15 44 44 H 0.96999 * 120.00506 * 180.02562 * 22 21 19 45 45 H 1.08993 * 110.37067 * 265.28512 * 27 9 8 46 46 H 1.09005 * 110.35927 * 142.96711 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6887 0.0006 5 6 4.7373 1.6235 0.0013 6 1 4.4109 2.6626 -0.0417 7 6 5.6417 1.3754 1.2373 8 6 7.0277 1.8501 0.7523 9 7 7.0164 1.8006 -0.7171 10 6 8.0361 2.1578 -1.5228 11 8 7.9149 2.0758 -2.7268 12 6 9.3267 2.6590 -0.9278 13 6 10.2954 2.9887 -2.0343 14 6 11.2259 2.0582 -2.4378 15 6 12.1176 2.3586 -3.4556 16 6 12.0839 3.5972 -4.0781 17 6 11.1629 4.5429 -3.6903 18 6 10.2482 4.2466 -2.6627 19 6 9.2924 5.2080 -2.2608 20 1 8.3633 4.8906 -1.8109 21 6 9.5505 6.5710 -2.4459 22 7 10.7701 6.9793 -2.6850 23 14 8.1533 7.8073 -2.3519 24 1 8.0039 8.2799 -0.9520 25 1 8.4543 8.9626 -3.2349 26 1 6.8909 7.1621 -2.7940 27 6 5.7050 1.2959 -1.1630 28 7 3.6194 -0.6168 0.0004 29 7 2.2964 -1.0881 0.0058 30 1 2.0092 -2.0146 0.0104 31 1 -0.3633 0.0000 -1.0278 32 1 -0.3634 0.8901 0.5138 33 1 -0.3634 -0.8899 0.5138 34 1 5.3058 1.9703 2.0867 35 1 5.6619 0.3163 1.4941 36 1 7.2080 2.8715 1.0875 37 1 7.8028 1.1901 1.1418 38 1 9.1312 3.5545 -0.3379 39 1 9.7550 1.8881 -0.2871 40 1 11.2608 1.0902 -1.9602 41 1 12.8442 1.6224 -3.7661 42 1 12.7833 3.8202 -4.8702 43 1 11.1387 5.5071 -4.1761 44 1 10.9490 7.9240 -2.8129 45 1 5.7490 0.2195 -1.3284 46 1 5.3910 1.8078 -2.0727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362879955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:29 Heat of formation + Delta-G solvation = 66.347260 kcal Electronic energy + Delta-G solvation = -28690.447882 eV Core-core repulsion = 24774.131233 eV Total energy + Delta-G solvation = -3916.316649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.47317 -39.64323 -37.79741 -36.71070 -33.70339 -33.54996 -32.68222 -31.80700 -30.96106 -29.39123 -29.21870 -28.15248 -26.76552 -25.04634 -23.79920 -22.57477 -21.31132 -20.85843 -20.10843 -19.86031 -18.58271 -18.29704 -17.08708 -16.52534 -16.12603 -15.99295 -15.41736 -14.86612 -14.55877 -14.42115 -14.20532 -13.77593 -13.52607 -13.44394 -13.40057 -13.34519 -13.10001 -12.52938 -12.37573 -12.26985 -12.18509 -11.77095 -11.65854 -11.49695 -11.46975 -11.09443 -10.99615 -10.89646 -10.86764 -10.63173 -10.33128 -10.30598 -10.28505 -9.71094 -9.41108 -9.30512 -9.11270 -9.07347 -8.26989 -7.23853 -7.21770 -6.66660 -4.26854 1.26361 2.29596 2.53470 2.84419 3.00886 3.12098 3.18330 3.33462 3.35050 3.41012 3.71957 4.00393 4.21284 4.41028 4.51781 4.63160 4.73558 4.85937 4.92552 5.08484 5.25934 5.30550 5.37613 5.46202 5.65492 5.71465 5.85164 5.92071 5.93312 5.95301 6.04588 6.11530 6.15957 6.18375 6.35873 6.50877 6.57782 6.65712 6.71323 6.87498 7.15897 7.37016 7.49712 7.71484 7.80822 7.94034 8.01871 8.15342 8.20258 8.39064 8.72082 8.89522 8.99275 9.09067 10.27450 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.002794 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.885723 B =10018.283723 C =11335.204400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.281 3.719 3 N -0.535 5.535 4 C 0.248 3.752 5 C -0.013 4.013 6 H 0.114 0.886 7 C -0.118 4.118 8 C 0.104 3.896 9 N -0.631 5.631 10 C 0.533 3.467 11 O -0.518 6.518 12 C -0.064 4.064 13 C -0.182 4.182 14 C -0.081 4.081 15 C -0.240 4.240 16 C -0.107 4.107 17 C -0.159 4.159 18 C 0.129 3.871 19 C -0.455 4.455 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.796 5.796 23 Si 0.901 3.099 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.261 1.261 27 C 0.121 3.879 28 N -0.307 5.307 29 N -0.485 5.485 30 H 0.440 0.560 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.279 0.721 45 H 0.069 0.931 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.843 -11.628 10.343 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.003 3.997 3 N -0.265 5.265 4 C -0.035 4.035 5 C -0.035 4.035 6 H 0.132 0.868 7 C -0.157 4.157 8 C -0.019 4.019 9 N -0.369 5.369 10 C 0.323 3.677 11 O -0.391 6.391 12 C -0.103 4.103 13 C -0.184 4.184 14 C -0.099 4.099 15 C -0.260 4.260 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.127 3.873 19 C -0.485 4.485 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.422 5.422 23 Si 0.725 3.275 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.185 1.185 27 C -0.003 4.003 28 N -0.135 5.135 29 N -0.203 5.203 30 H 0.285 0.715 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.135 0.865 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.100 -11.434 9.571 22.688 hybrid contribution -1.030 -0.107 0.060 1.038 sum -18.130 -11.541 9.631 23.551 Atomic orbital electron populations 1.20402 0.83600 1.04996 1.04678 1.24424 0.96660 0.82862 0.95799 1.70379 1.01377 1.29510 1.25190 1.23791 0.92690 0.89816 0.97237 1.20717 0.88306 0.97453 0.97033 0.86813 1.22713 0.93470 1.02794 0.96769 1.21966 0.97072 1.01869 0.81003 1.48627 1.14074 1.67633 1.06553 1.21013 0.84182 0.75999 0.86515 1.90690 1.81573 1.52301 1.14545 1.20239 0.90863 1.01097 0.98138 1.19087 1.00383 0.97344 1.01598 1.20298 0.96100 0.96381 0.97118 1.20301 1.04297 0.97690 1.03675 1.20669 0.98679 0.94254 0.98962 1.21290 0.98455 0.99036 0.99091 1.17338 0.90860 0.90405 0.88732 1.19460 1.03017 0.90110 1.35867 0.90795 1.25874 0.95904 0.99699 0.92544 1.69820 1.19922 1.17222 1.35218 0.86426 0.82408 0.79717 0.78903 1.19507 1.20129 1.18474 1.22038 0.82286 0.99571 0.96428 1.78021 0.96383 1.12328 1.26815 1.48014 1.04374 1.10028 1.57869 0.71498 0.88899 0.88265 0.89890 0.89550 0.90040 0.90761 0.91107 0.88549 0.90672 0.89794 0.89703 0.89621 0.86523 0.91026 0.91299 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.51 36.00 0.38 0.10 16 2 C 0.28 2.42 8.24 -155.69 -1.28 1.14 16 3 N -0.54 -6.53 11.19 -8.16 -0.09 -6.62 16 4 C 0.25 3.14 6.82 -156.86 -1.07 2.06 16 5 C -0.01 -0.16 3.57 -89.63 -0.32 -0.48 16 6 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 7 C -0.12 -1.22 6.41 -24.90 -0.16 -1.38 16 8 C 0.10 1.26 6.49 -3.06 -0.02 1.24 16 9 N -0.63 -10.36 3.33 -170.53 -0.57 -10.93 16 10 C 0.53 11.14 7.46 -10.99 -0.08 11.06 16 11 O -0.52 -13.18 16.29 5.56 0.09 -13.09 16 12 C -0.06 -1.31 4.37 -29.03 -0.13 -1.43 16 13 C -0.18 -4.54 4.43 -103.91 -0.46 -5.00 16 14 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 15 C -0.24 -5.77 10.05 -39.29 -0.39 -6.17 16 16 C -0.11 -2.69 10.02 -39.66 -0.40 -3.09 16 17 C -0.16 -4.37 8.69 -38.88 -0.34 -4.71 16 18 C 0.13 3.54 5.56 -106.83 -0.59 2.95 16 19 C -0.45 -12.25 8.14 -37.74 -0.31 -12.55 16 20 H 0.07 1.95 6.67 -52.49 -0.35 1.60 16 21 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 22 N -0.80 -20.91 10.96 55.55 0.61 -20.31 16 23 Si 0.90 19.26 29.59 -169.99 -5.03 14.23 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 27 C 0.12 1.83 6.36 -2.53 -0.02 1.82 16 28 N -0.31 -3.73 12.43 32.42 0.40 -3.32 16 29 N -0.48 -4.08 7.45 32.62 0.24 -3.83 16 30 H 0.44 2.00 8.96 -182.33 -1.63 0.36 16 31 H 0.09 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.84 7.94 -51.93 -0.41 0.43 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.10 1.93 7.08 -51.93 -0.37 1.56 16 39 H 0.07 1.31 8.05 -51.92 -0.42 0.89 16 40 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.08 1.81 8.06 -52.49 -0.42 1.38 16 42 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.12 3.27 6.20 -52.49 -0.33 2.95 16 44 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 45 H 0.07 1.06 7.82 -51.93 -0.41 0.66 16 46 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -35.44 384.73 -11.90 -47.34 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.69 Total: 5.61 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -5.66 Total: -14.89 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.60 Total: -45.01 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.44 -11.90 -47.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362879955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.689 kcal (2) G-P(sol) polarization free energy of solvation -35.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds