Wall clock time and date at job start Sat Apr 11 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30827 * 125.96445 * 2 1 4 4 C 1.33245 * 109.82920 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.52441 * 179.97438 * 4 3 2 6 6 H 1.08990 * 110.91625 * 2.46025 * 5 4 3 7 7 C 1.55153 * 111.00595 * 238.55187 * 5 4 3 8 8 C 1.54322 * 102.94333 * 206.42862 * 7 5 4 9 9 N 1.47021 * 107.27023 * 22.19243 * 8 7 5 10 10 C 1.34779 * 125.64684 * 181.01977 * 9 8 7 11 11 O 1.21284 * 120.00002 * 180.02562 * 10 9 8 12 12 C 1.50698 * 120.00157 * 0.03162 * 10 9 8 13 13 C 1.50706 * 109.47073 * 179.97438 * 12 10 9 14 14 C 1.37635 * 120.12603 * 264.97175 * 13 12 10 15 15 C 1.38616 * 120.24706 * 180.02562 * 14 13 12 16 16 C 1.38655 * 120.49937 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.24915 * 359.67511 * 16 15 14 18 18 C 1.40689 * 120.12659 * 85.00286 * 13 12 10 19 19 C 1.41399 * 120.24622 * 359.97315 * 18 13 12 20 20 H 1.07996 * 119.99772 * 334.89540 * 19 18 13 21 21 C 1.39941 * 119.99943 * 154.89356 * 19 18 13 22 22 N 1.30826 * 120.00078 * 344.78545 * 21 19 18 23 23 Si 1.86803 * 120.00128 * 164.78738 * 21 19 18 24 24 H 1.48500 * 109.46957 * 270.00206 * 23 21 19 25 25 H 1.48501 * 109.46828 * 29.99687 * 23 21 19 26 26 H 1.48503 * 109.47234 * 149.99856 * 23 21 19 27 27 C 1.47424 * 108.70371 * 1.29084 * 9 8 7 28 28 N 1.30716 * 108.94556 * 0.27079 * 4 3 2 29 29 N 1.34440 * 125.95875 * 179.97438 * 2 1 3 30 30 H 0.96999 * 126.81735 * 0.02562 * 29 2 1 31 31 H 1.09008 * 109.47155 * 89.99597 * 1 2 3 32 32 H 1.09000 * 109.47741 * 209.99534 * 1 2 3 33 33 H 1.09000 * 109.47125 * 330.00288 * 1 2 3 34 34 H 1.09000 * 110.72044 * 88.06620 * 7 5 4 35 35 H 1.09001 * 110.72477 * 324.79100 * 7 5 4 36 36 H 1.09004 * 109.88320 * 262.77678 * 8 7 5 37 37 H 1.08998 * 109.88673 * 141.60990 * 8 7 5 38 38 H 1.09007 * 109.47472 * 59.99655 * 12 10 9 39 39 H 1.08996 * 109.46954 * 299.99577 * 12 10 9 40 40 H 1.08007 * 119.88042 * 0.02879 * 14 13 12 41 41 H 1.07996 * 119.74752 * 179.97438 * 15 14 13 42 42 H 1.08004 * 119.87516 * 179.97438 * 16 15 14 43 43 H 1.07998 * 120.12658 * 180.29855 * 17 16 15 44 44 H 0.97007 * 119.99845 * 179.97438 * 22 21 19 45 45 H 1.08998 * 110.36624 * 94.47975 * 27 9 8 46 46 H 1.08999 * 110.36353 * 216.80305 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6886 0.0006 5 6 4.7373 1.6234 0.0002 6 1 4.4115 2.6626 0.0431 7 6 5.6425 1.3749 -1.2351 8 6 7.0282 1.8496 -0.7493 9 7 7.0160 1.8006 0.7201 10 6 8.0355 2.1569 1.5264 11 8 7.9138 2.0745 2.7303 12 6 9.3266 2.6578 0.9322 13 6 10.2949 2.9864 2.0392 14 6 10.3947 4.2760 2.5096 15 6 11.2849 4.5812 3.5273 16 6 12.0844 3.5937 4.0825 17 6 11.9971 2.2965 3.6321 18 6 11.1009 1.9762 2.5954 19 6 11.0072 0.6478 2.1201 20 1 10.0955 0.3041 1.6542 21 6 12.0957 -0.2215 2.2535 22 7 13.2816 0.2537 2.5352 23 14 11.8555 -2.0604 2.0291 24 1 11.5195 -2.6788 3.3368 25 1 10.7488 -2.3014 1.0687 26 1 13.1070 -2.6627 1.5036 27 6 5.7062 1.2909 1.1652 28 7 3.6193 -0.6170 -0.0049 29 7 2.2964 -1.0882 0.0005 30 1 2.0092 -2.0147 0.0006 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5137 33 1 -0.3633 0.8900 0.5138 34 1 5.3073 1.9696 -2.0848 35 1 5.6654 0.3153 -1.4896 36 1 7.2087 2.8710 -1.0845 37 1 7.8034 1.1880 -1.1358 38 1 9.1318 3.5536 0.3425 39 1 9.7547 1.8870 0.2914 40 1 9.7770 5.0532 2.0841 41 1 11.3568 5.5959 3.8900 42 1 12.7748 3.8428 4.8748 43 1 12.6173 1.5280 4.0693 44 1 14.0361 -0.3490 2.6280 45 1 5.7532 0.2140 1.3270 46 1 5.3913 1.7990 2.0767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362879958.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:32 Heat of formation + Delta-G solvation = 66.382871 kcal Electronic energy + Delta-G solvation = -28679.010914 eV Core-core repulsion = 24762.695809 eV Total energy + Delta-G solvation = -3916.315105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.47117 -39.64317 -37.79769 -36.71151 -33.70261 -33.55596 -32.68248 -31.80888 -30.96281 -29.38324 -29.21412 -28.15187 -26.76733 -25.05200 -23.80416 -22.57529 -21.30682 -20.85552 -20.11195 -19.86361 -18.58200 -18.29361 -17.08433 -16.53293 -16.15482 -15.99575 -15.31355 -14.99113 -14.58240 -14.38893 -14.16716 -13.77138 -13.55410 -13.45754 -13.41115 -13.32540 -13.09948 -12.55928 -12.37335 -12.25869 -12.18007 -11.78856 -11.64538 -11.48223 -11.47836 -11.11380 -11.01672 -10.91443 -10.87637 -10.59746 -10.32698 -10.30650 -10.28971 -9.70905 -9.42138 -9.29005 -9.12056 -9.08956 -8.26956 -7.23739 -7.22184 -6.66162 -4.27611 1.27096 2.30454 2.52840 2.84001 3.01241 3.11467 3.15162 3.33802 3.35987 3.38907 3.72318 3.99324 4.21180 4.40880 4.50658 4.62871 4.73332 4.85377 4.90487 5.07637 5.25260 5.29707 5.36411 5.45477 5.64574 5.71889 5.85120 5.91052 5.93855 5.96560 6.04835 6.10285 6.15730 6.18822 6.35972 6.50795 6.58020 6.65543 6.71904 6.87500 7.15561 7.37835 7.50249 7.71324 7.80533 7.93964 8.01836 8.15668 8.20674 8.38917 8.72391 8.89343 8.99125 9.08971 10.27150 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013696 B = 0.002779 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.850005 B =10074.772250 C =11375.337027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.280 3.720 3 N -0.536 5.536 4 C 0.245 3.755 5 C -0.012 4.012 6 H 0.113 0.887 7 C -0.119 4.119 8 C 0.104 3.896 9 N -0.631 5.631 10 C 0.533 3.467 11 O -0.518 6.518 12 C -0.064 4.064 13 C -0.182 4.182 14 C -0.081 4.081 15 C -0.240 4.240 16 C -0.107 4.107 17 C -0.160 4.160 18 C 0.128 3.872 19 C -0.454 4.454 20 H 0.074 0.926 21 C 0.076 3.924 22 N -0.797 5.797 23 Si 0.904 3.096 24 H -0.268 1.268 25 H -0.263 1.263 26 H -0.278 1.278 27 C 0.121 3.879 28 N -0.304 5.304 29 N -0.484 5.484 30 H 0.440 0.560 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.279 0.721 45 H 0.070 0.930 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.263 -2.479 -10.128 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.002 3.998 3 N -0.266 5.266 4 C -0.037 4.037 5 C -0.034 4.034 6 H 0.131 0.869 7 C -0.158 4.158 8 C -0.019 4.019 9 N -0.369 5.369 10 C 0.323 3.677 11 O -0.391 6.391 12 C -0.104 4.104 13 C -0.184 4.184 14 C -0.099 4.099 15 C -0.259 4.259 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.125 3.875 19 C -0.483 4.483 20 H 0.092 0.908 21 C -0.141 4.141 22 N -0.423 5.423 23 Si 0.728 3.272 24 H -0.194 1.194 25 H -0.187 1.187 26 H -0.204 1.204 27 C -0.004 4.004 28 N -0.133 5.133 29 N -0.202 5.202 30 H 0.285 0.715 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.404 -2.595 -9.371 22.603 hybrid contribution -0.476 -1.622 -0.121 1.694 sum -20.880 -4.216 -9.492 23.321 Atomic orbital electron populations 1.20397 0.83608 1.05097 1.04551 1.24416 0.96645 0.82886 0.95865 1.70363 1.01349 1.29533 1.25325 1.23797 0.92671 0.89868 0.97411 1.20739 0.88264 0.97249 0.97101 0.86929 1.22725 0.93422 1.02979 0.96696 1.21973 0.97283 1.01639 0.81016 1.48628 1.14172 1.67538 1.06567 1.21011 0.83900 0.76285 0.86508 1.90691 1.81252 1.52604 1.14581 1.20240 0.90779 1.01028 0.98311 1.19076 1.04007 0.93474 1.01830 1.20295 0.97695 0.94944 0.96979 1.20307 1.04180 0.97503 1.03929 1.20678 0.98559 0.94264 0.99098 1.21343 1.02762 0.95147 0.98626 1.17349 0.89319 0.91903 0.88914 1.19488 0.99086 0.95296 1.34473 0.90831 1.25876 0.94537 1.00935 0.92744 1.69822 0.99858 1.37004 1.35578 0.86386 0.78597 0.82571 0.79602 1.19364 1.18717 1.20354 1.22096 0.82221 0.99812 0.96241 1.78057 0.96352 1.12331 1.26542 1.48023 1.04366 1.10066 1.57750 0.71450 0.88977 0.89850 0.88268 0.89582 0.89931 0.91044 0.90820 0.90611 0.88610 0.89749 0.89686 0.89624 0.86317 0.91045 0.91133 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.28 2.40 8.24 -155.69 -1.28 1.12 16 3 N -0.54 -6.39 11.19 -8.16 -0.09 -6.48 16 4 C 0.25 3.09 6.82 -156.85 -1.07 2.02 16 5 C -0.01 -0.14 3.59 -89.50 -0.32 -0.46 16 6 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 7 C -0.12 -1.23 6.40 -24.90 -0.16 -1.39 16 8 C 0.10 1.26 6.48 -3.07 -0.02 1.24 16 9 N -0.63 -10.37 3.32 -170.38 -0.57 -10.94 16 10 C 0.53 11.14 7.49 -10.99 -0.08 11.06 16 11 O -0.52 -13.17 16.29 5.55 0.09 -13.08 16 12 C -0.06 -1.31 4.37 -29.03 -0.13 -1.44 16 13 C -0.18 -4.53 4.43 -103.91 -0.46 -4.99 16 14 C -0.08 -1.92 9.66 -39.66 -0.38 -2.31 16 15 C -0.24 -5.75 10.05 -39.29 -0.39 -6.15 16 16 C -0.11 -2.70 10.02 -39.66 -0.40 -3.10 16 17 C -0.16 -4.38 8.69 -38.87 -0.34 -4.72 16 18 C 0.13 3.51 5.57 -106.83 -0.60 2.92 16 19 C -0.45 -12.30 8.17 -37.74 -0.31 -12.61 16 20 H 0.07 1.96 6.64 -52.49 -0.35 1.62 16 21 C 0.08 1.96 5.19 -17.34 -0.09 1.87 16 22 N -0.80 -21.02 10.86 55.55 0.60 -20.41 16 23 Si 0.90 19.51 29.59 -169.99 -5.03 14.48 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 27 C 0.12 1.82 6.37 -2.41 -0.02 1.81 16 28 N -0.30 -3.81 12.43 32.42 0.40 -3.41 16 29 N -0.48 -4.19 7.45 32.62 0.24 -3.95 16 30 H 0.44 2.16 8.96 -182.34 -1.63 0.53 16 31 H 0.09 0.20 8.14 -51.92 -0.42 -0.22 16 32 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 33 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.90 7.93 -51.93 -0.41 0.49 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 39 H 0.10 1.94 7.05 -51.93 -0.37 1.57 16 40 H 0.08 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.08 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 43 H 0.12 3.35 6.13 -52.49 -0.32 3.02 16 44 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 45 H 0.07 1.15 7.83 -51.93 -0.41 0.74 16 46 H 0.08 1.29 8.03 -51.93 -0.42 0.87 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -35.55 384.60 -11.90 -47.45 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.69 Total: 5.56 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -5.67 Total: -15.02 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.59 Total: -45.19 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.55 -11.90 -47.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362879958.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.836 kcal (2) G-P(sol) polarization free energy of solvation -35.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds