Wall clock time and date at job start Sat Apr 11 2020 06:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30827 * 125.96445 * 2 1 4 4 C 1.33245 * 109.82920 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.52441 * 179.97438 * 4 3 2 6 6 H 1.08990 * 110.91625 * 2.46025 * 5 4 3 7 7 C 1.55153 * 111.00595 * 238.55187 * 5 4 3 8 8 C 1.54322 * 102.94333 * 206.42862 * 7 5 4 9 9 N 1.47021 * 107.27023 * 22.19243 * 8 7 5 10 10 C 1.34779 * 125.64684 * 181.01977 * 9 8 7 11 11 O 1.21284 * 120.00002 * 180.02562 * 10 9 8 12 12 C 1.50698 * 120.00157 * 0.03162 * 10 9 8 13 13 C 1.50706 * 109.47073 * 179.97438 * 12 10 9 14 14 C 1.37635 * 120.12603 * 264.97175 * 13 12 10 15 15 C 1.38616 * 120.24706 * 180.02562 * 14 13 12 16 16 C 1.38655 * 120.49937 * 0.02562 * 15 14 13 17 17 C 1.37599 * 120.24915 * 359.67511 * 16 15 14 18 18 C 1.40689 * 120.12659 * 85.00286 * 13 12 10 19 19 C 1.41399 * 120.24622 * 359.97315 * 18 13 12 20 20 H 1.07996 * 119.99772 * 334.89540 * 19 18 13 21 21 C 1.39941 * 119.99943 * 154.89356 * 19 18 13 22 22 N 1.30826 * 120.00078 * 344.78545 * 21 19 18 23 23 Si 1.86803 * 120.00128 * 164.78738 * 21 19 18 24 24 H 1.48500 * 109.46957 * 270.00206 * 23 21 19 25 25 H 1.48501 * 109.46828 * 29.99687 * 23 21 19 26 26 H 1.48503 * 109.47234 * 149.99856 * 23 21 19 27 27 C 1.47424 * 108.70371 * 1.29084 * 9 8 7 28 28 N 1.30716 * 108.94556 * 0.27079 * 4 3 2 29 29 N 1.34440 * 125.95875 * 179.97438 * 2 1 3 30 30 H 0.96999 * 126.81735 * 0.02562 * 29 2 1 31 31 H 1.09008 * 109.47155 * 89.99597 * 1 2 3 32 32 H 1.09000 * 109.47741 * 209.99534 * 1 2 3 33 33 H 1.09000 * 109.47125 * 330.00288 * 1 2 3 34 34 H 1.09000 * 110.72044 * 88.06620 * 7 5 4 35 35 H 1.09001 * 110.72477 * 324.79100 * 7 5 4 36 36 H 1.09004 * 109.88320 * 262.77678 * 8 7 5 37 37 H 1.08998 * 109.88673 * 141.60990 * 8 7 5 38 38 H 1.09007 * 109.47472 * 59.99655 * 12 10 9 39 39 H 1.08996 * 109.46954 * 299.99577 * 12 10 9 40 40 H 1.08007 * 119.88042 * 0.02879 * 14 13 12 41 41 H 1.07996 * 119.74752 * 179.97438 * 15 14 13 42 42 H 1.08004 * 119.87516 * 179.97438 * 16 15 14 43 43 H 1.07998 * 120.12658 * 180.29855 * 17 16 15 44 44 H 0.97007 * 119.99845 * 179.97438 * 22 21 19 45 45 H 1.08998 * 110.36624 * 94.47975 * 27 9 8 46 46 H 1.08999 * 110.36353 * 216.80305 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0589 0.0000 4 6 3.5552 0.6886 0.0006 5 6 4.7373 1.6234 0.0002 6 1 4.4115 2.6626 0.0431 7 6 5.6425 1.3749 -1.2351 8 6 7.0282 1.8496 -0.7493 9 7 7.0160 1.8006 0.7201 10 6 8.0355 2.1569 1.5264 11 8 7.9138 2.0745 2.7303 12 6 9.3266 2.6578 0.9322 13 6 10.2949 2.9864 2.0392 14 6 10.3947 4.2760 2.5096 15 6 11.2849 4.5812 3.5273 16 6 12.0844 3.5937 4.0825 17 6 11.9971 2.2965 3.6321 18 6 11.1009 1.9762 2.5954 19 6 11.0072 0.6478 2.1201 20 1 10.0955 0.3041 1.6542 21 6 12.0957 -0.2215 2.2535 22 7 13.2816 0.2537 2.5352 23 14 11.8555 -2.0604 2.0291 24 1 11.5195 -2.6788 3.3368 25 1 10.7488 -2.3014 1.0687 26 1 13.1070 -2.6627 1.5036 27 6 5.7062 1.2909 1.1652 28 7 3.6193 -0.6170 -0.0049 29 7 2.2964 -1.0882 0.0005 30 1 2.0092 -2.0147 0.0006 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5137 33 1 -0.3633 0.8900 0.5138 34 1 5.3073 1.9696 -2.0848 35 1 5.6654 0.3153 -1.4896 36 1 7.2087 2.8710 -1.0845 37 1 7.8034 1.1880 -1.1358 38 1 9.1318 3.5536 0.3425 39 1 9.7547 1.8870 0.2914 40 1 9.7770 5.0532 2.0841 41 1 11.3568 5.5959 3.8900 42 1 12.7748 3.8428 4.8748 43 1 12.6173 1.5280 4.0693 44 1 14.0361 -0.3490 2.6280 45 1 5.7532 0.2140 1.3270 46 1 5.3913 1.7990 2.0767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362879958.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:31 Heat of formation + Delta-G solvation = 44.541007 kcal Electronic energy + Delta-G solvation = -28679.958048 eV Core-core repulsion = 24762.695809 eV Total energy + Delta-G solvation = -3917.262239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.23956 -41.07676 -39.45627 -38.29054 -35.50619 -34.63338 -33.46357 -33.38915 -32.13264 -31.32492 -30.24383 -28.93534 -28.32995 -26.93646 -25.08443 -23.54540 -22.81244 -22.04672 -21.74546 -20.88976 -20.05964 -19.04599 -19.04101 -17.99957 -17.45193 -17.04458 -16.72277 -16.50136 -16.09338 -15.73657 -15.42773 -15.30600 -14.96230 -14.58756 -14.42827 -14.38894 -13.87128 -13.79622 -13.69766 -13.52101 -13.49146 -13.33311 -12.92830 -12.84418 -12.76848 -12.67456 -12.58395 -12.51442 -12.43929 -12.11091 -11.84251 -11.32197 -11.20002 -11.11939 -11.10152 -11.05332 -10.81015 -10.48166 -9.63143 -9.22131 -9.16088 -8.59135 -6.29969 0.53429 0.98202 1.13373 1.33238 1.45140 1.51746 1.66721 1.71389 1.78896 2.07114 2.18445 2.77831 2.95328 3.39191 3.47015 3.76183 3.79055 3.79379 4.12152 4.14057 4.24746 4.30778 4.39937 4.42173 4.58525 4.61965 4.70827 4.71360 4.72763 4.75264 4.83391 4.86321 4.97906 5.05445 5.06377 5.15653 5.19695 5.22673 5.31098 5.38571 5.39556 5.55849 5.77567 6.04369 6.17314 6.18316 6.22407 6.42423 6.54976 6.74419 6.99326 7.03888 7.11489 7.32368 8.36494 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013696 B = 0.002779 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.850005 B =10074.772250 C =11375.337027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.288 3.712 3 N -0.569 5.569 4 C 0.234 3.766 5 C -0.001 4.001 6 H 0.122 0.878 7 C -0.105 4.105 8 C 0.095 3.905 9 N -0.625 5.625 10 C 0.531 3.469 11 O -0.577 6.577 12 C -0.059 4.059 13 C -0.190 4.190 14 C -0.090 4.090 15 C -0.242 4.242 16 C -0.117 4.117 17 C -0.194 4.194 18 C 0.094 3.906 19 C -0.480 4.480 20 H 0.067 0.933 21 C 0.036 3.964 22 N -0.825 5.825 23 Si 0.970 3.030 24 H -0.272 1.272 25 H -0.259 1.259 26 H -0.261 1.261 27 C 0.121 3.879 28 N -0.339 5.339 29 N -0.476 5.476 30 H 0.455 0.545 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.286 0.714 45 H 0.054 0.946 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.534 -2.256 -12.333 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.011 3.989 3 N -0.299 5.299 4 C -0.049 4.049 5 C -0.022 4.022 6 H 0.140 0.860 7 C -0.144 4.144 8 C -0.026 4.026 9 N -0.360 5.360 10 C 0.322 3.678 11 O -0.456 6.456 12 C -0.098 4.098 13 C -0.192 4.192 14 C -0.108 4.108 15 C -0.261 4.261 16 C -0.135 4.135 17 C -0.214 4.214 18 C 0.091 3.909 19 C -0.510 4.510 20 H 0.085 0.915 21 C -0.178 4.178 22 N -0.452 5.452 23 Si 0.792 3.208 24 H -0.197 1.197 25 H -0.183 1.183 26 H -0.185 1.185 27 C -0.004 4.004 28 N -0.168 5.168 29 N -0.196 5.196 30 H 0.304 0.696 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.133 0.867 39 H 0.113 0.887 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.707 -2.388 -11.636 25.627 hybrid contribution 0.107 -1.635 0.570 1.735 sum -22.600 -4.023 -11.066 25.484 Atomic orbital electron populations 1.20661 0.79958 1.06514 1.06222 1.25294 0.98308 0.81937 0.93408 1.70353 1.01329 1.31212 1.27014 1.23814 0.93176 0.89962 0.97969 1.20624 0.87797 0.97716 0.96079 0.85983 1.22697 0.91681 1.03209 0.96804 1.22339 0.98669 1.03618 0.77997 1.48566 1.13514 1.65532 1.08438 1.20974 0.84730 0.76112 0.85980 1.90660 1.82426 1.55479 1.17012 1.20220 0.89721 1.02704 0.97158 1.19567 1.03772 0.93489 1.02364 1.20742 0.97809 0.95440 0.96835 1.20738 1.03241 0.98656 1.03466 1.20959 0.99202 0.93752 0.99626 1.21355 1.04084 0.95963 0.99981 1.17752 0.90439 0.93085 0.89582 1.19590 0.99364 0.96102 1.35928 0.91531 1.26641 0.93942 1.05088 0.92170 1.69876 1.00565 1.38665 1.36075 0.85387 0.79150 0.77000 0.79303 1.19701 1.18323 1.18526 1.22072 0.82574 0.98466 0.97243 1.77953 0.98695 1.12578 1.27595 1.47962 1.03250 1.11119 1.57251 0.69618 0.86969 0.87105 0.88134 0.86357 0.90523 0.88257 0.90424 0.86747 0.88653 0.86398 0.86533 0.87614 0.88282 0.90349 0.92758 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.51 71.23 0.75 0.45 16 2 C 0.29 4.39 8.24 138.22 1.14 5.53 16 3 N -0.57 -12.84 11.19 -179.72 -2.01 -14.85 16 4 C 0.23 5.71 6.82 138.63 0.95 6.66 16 5 C 0.00 -0.01 3.59 -10.07 -0.04 -0.05 16 6 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 7 C -0.11 -1.93 6.40 31.78 0.20 -1.73 16 8 C 0.10 2.10 6.48 86.73 0.56 2.66 16 9 N -0.63 -20.31 3.32 -811.35 -2.70 -23.01 16 10 C 0.53 22.41 7.49 87.66 0.66 23.06 16 11 O -0.58 -30.45 16.29 -3.04 -0.05 -30.50 16 12 C -0.06 -2.37 4.37 29.10 0.13 -2.24 16 13 C -0.19 -9.52 4.43 -19.41 -0.09 -9.60 16 14 C -0.09 -4.19 9.66 22.22 0.21 -3.98 16 15 C -0.24 -11.34 10.05 22.46 0.23 -11.11 16 16 C -0.12 -5.95 10.02 22.22 0.22 -5.72 16 17 C -0.19 -11.11 8.69 22.73 0.20 -10.92 16 18 C 0.09 5.34 5.57 -21.29 -0.12 5.22 16 19 C -0.48 -27.01 8.17 23.46 0.19 -26.82 16 20 H 0.07 3.70 6.64 -2.91 -0.02 3.68 16 21 C 0.04 1.90 5.19 85.26 0.44 2.34 16 22 N -0.83 -44.96 10.86 21.83 0.24 -44.72 16 23 Si 0.97 40.84 29.59 68.60 2.03 42.87 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 27 C 0.12 3.72 6.37 86.93 0.55 4.28 16 28 N -0.34 -8.29 12.43 -51.33 -0.64 -8.93 16 29 N -0.48 -7.56 7.45 -50.71 -0.38 -7.94 16 30 H 0.46 3.69 8.96 -213.10 -1.91 1.78 16 31 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 32 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.54 7.93 -2.39 -0.02 1.52 16 36 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.11 3.63 8.05 -2.38 -0.02 3.61 16 39 H 0.10 3.84 7.05 -2.39 -0.02 3.83 16 40 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 41 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 42 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 43 H 0.10 5.91 6.13 -2.91 -0.02 5.89 16 44 H 0.29 14.11 8.30 -92.70 -0.77 13.34 16 45 H 0.05 1.85 7.83 -2.39 -0.02 1.83 16 46 H 0.06 2.07 8.03 -2.39 -0.02 2.05 16 Total: -1.00 -81.87 384.60 1.79 -80.08 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.89 Total: 28.98 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 6.19 Total: -21.98 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -5.49 Total: -99.45 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.05 Total: -30.50 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -81.87 1.79 -80.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362879958.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.621 kcal (2) G-P(sol) polarization free energy of solvation -81.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds