Wall clock time and date at job start Sat Apr 11 2020 06:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30832 * 125.96173 * 2 1 4 4 C 1.33241 * 109.82757 * 179.74076 * 3 2 1 5 5 C 1.50700 * 125.52295 * 179.97438 * 4 3 2 6 6 C 1.53947 * 113.74132 * 218.73394 * 5 4 3 7 7 N 1.47808 * 86.03760 * 222.08328 * 6 5 4 8 8 C 1.34777 * 134.45365 * 204.63832 * 7 6 5 9 9 O 1.21283 * 119.99831 * 179.87110 * 8 7 6 10 10 C 1.50697 * 120.00457 * 359.87342 * 8 7 6 11 11 C 1.52992 * 109.47557 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.47147 * 54.99791 * 11 10 8 13 13 C 1.50701 * 109.47164 * 295.00423 * 11 10 8 14 14 H 1.08008 * 120.00001 * 325.83908 * 13 11 10 15 15 C 1.37873 * 120.00200 * 145.84722 * 13 11 10 16 16 N 1.31516 * 120.00060 * 6.11604 * 15 13 11 17 17 Si 1.86801 * 120.00159 * 186.11712 * 15 13 11 18 18 H 1.48504 * 109.47055 * 59.99564 * 17 15 13 19 19 H 1.48495 * 109.47423 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47127 * 299.99858 * 17 15 13 21 21 C 1.50696 * 109.47524 * 175.00216 * 11 10 8 22 22 C 1.38236 * 120.00246 * 63.46033 * 21 11 10 23 23 C 1.38229 * 120.00258 * 179.78715 * 22 21 11 24 24 C 1.38237 * 119.99842 * 0.45087 * 23 22 21 25 25 C 1.38234 * 120.00329 * 359.80653 * 24 23 22 26 26 C 1.38233 * 120.00159 * 243.74133 * 21 11 10 27 27 C 1.47578 * 91.05015 * 24.55246 * 7 6 5 28 28 N 1.30711 * 108.94655 * 359.97438 * 4 3 2 29 29 N 1.34433 * 125.96014 * 179.69491 * 2 1 3 30 30 H 0.96998 * 126.82204 * 0.25499 * 29 2 1 31 31 H 1.09001 * 109.47095 * 90.00360 * 1 2 3 32 32 H 1.08998 * 109.47409 * 209.99589 * 1 2 3 33 33 H 1.08996 * 109.47360 * 329.99925 * 1 2 3 34 34 H 1.09000 * 112.94656 * 350.32510 * 5 4 3 35 35 H 1.09004 * 113.76499 * 336.35425 * 6 5 4 36 36 H 1.08999 * 113.76794 * 107.74237 * 6 5 4 37 37 H 1.08998 * 109.47056 * 300.00137 * 10 8 7 38 38 H 1.09003 * 109.46880 * 59.99687 * 10 8 7 39 39 H 0.96997 * 119.99641 * 180.02562 * 16 15 13 40 40 H 1.08004 * 119.99592 * 0.02562 * 22 21 11 41 41 H 1.08000 * 120.00055 * 180.27302 * 23 22 21 42 42 H 1.07997 * 120.00113 * 179.82965 * 24 23 22 43 43 H 1.07992 * 120.00503 * 180.02562 * 25 24 23 44 44 H 1.08000 * 119.99774 * 359.97438 * 26 21 11 45 45 H 1.09005 * 113.76721 * 221.15045 * 27 7 6 46 46 H 1.08992 * 113.87656 * 89.76781 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6887 0.0057 5 6 4.7372 1.6236 0.0070 6 6 5.9083 1.1432 -0.8692 7 7 6.7830 1.5844 0.2377 8 6 8.0699 1.9751 0.3255 9 8 8.5350 2.2935 1.3993 10 6 8.9310 2.0163 -0.9106 11 6 10.3367 2.4909 -0.5374 12 1 10.7380 1.8538 0.2508 13 6 10.2728 3.9149 -0.0483 14 1 9.5563 4.6010 -0.4755 15 6 11.1291 4.3420 0.9443 16 7 12.0802 3.5451 1.3801 17 14 10.9382 6.0525 1.6704 18 1 9.5898 6.1845 2.2783 19 1 11.9738 6.2661 2.7129 20 1 11.0988 7.0665 0.5973 21 6 11.2305 2.4153 -1.7484 22 6 10.9621 3.1982 -2.8556 23 6 11.7844 3.1322 -3.9646 24 6 12.8700 2.2763 -3.9701 25 6 13.1354 1.4894 -2.8651 26 6 12.3155 1.5588 -1.7543 27 6 5.6813 1.4274 1.2070 28 7 3.6193 -0.6168 0.0099 29 7 2.2964 -1.0881 0.0058 30 1 2.0093 -2.0146 0.0073 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5137 33 1 -0.3634 0.8899 0.5138 34 1 4.4572 2.6628 -0.1659 35 1 5.9195 0.0660 -1.0355 36 1 6.0351 1.7179 -1.7867 37 1 8.9877 1.0192 -1.3473 38 1 8.4953 2.7055 -1.6340 39 1 12.6824 3.8454 2.0787 40 1 10.1120 3.8644 -2.8525 41 1 11.5772 3.7471 -4.8279 42 1 13.5109 2.2226 -4.8377 43 1 13.9836 0.8210 -2.8692 44 1 12.5228 0.9441 -0.8908 45 1 5.6272 2.2286 1.9441 46 1 5.6243 0.4346 1.6531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363959297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:36 Heat of formation + Delta-G solvation = 110.568964 kcal Electronic energy + Delta-G solvation = -28398.337448 eV Core-core repulsion = 24483.938396 eV Total energy + Delta-G solvation = -3914.399052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.47323 -39.77145 -38.38866 -37.15145 -33.90393 -33.33353 -32.67020 -31.42776 -29.99708 -29.91536 -28.66313 -27.90846 -26.21018 -25.36656 -23.80724 -22.45601 -21.56908 -21.32514 -20.05125 -19.51168 -18.50495 -18.11147 -16.59997 -16.36101 -16.10321 -15.77073 -15.67282 -15.06158 -14.62246 -14.33440 -14.11470 -13.89532 -13.67722 -13.46681 -13.44660 -12.75666 -12.62719 -12.55033 -12.50518 -12.28985 -12.07993 -11.99973 -11.87504 -11.57506 -11.47267 -11.22736 -10.78820 -10.64385 -10.53543 -10.30101 -10.25835 -10.21163 -10.00558 -9.68552 -9.39128 -9.01500 -8.81557 -8.32165 -8.18675 -7.99674 -7.55625 -5.87710 -3.87141 1.26868 2.30297 2.33705 2.39256 2.52932 3.18532 3.43517 3.47239 3.49321 3.52114 3.74151 4.29280 4.43465 4.50251 4.57609 4.78016 4.82558 4.91369 4.96308 5.26059 5.30488 5.40020 5.50771 5.53317 5.58980 5.70414 5.77653 5.79814 5.88768 5.94026 6.08452 6.13982 6.17487 6.27205 6.28629 6.39609 6.46202 6.58938 6.72079 6.87103 6.96795 7.10424 7.35635 7.49597 7.58602 7.81802 7.91168 8.00124 8.10231 8.24682 8.44076 9.09603 9.12809 9.74682 11.22531 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.002680 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.521103 B =10445.390094 C =11892.779067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.280 3.720 3 N -0.535 5.535 4 C 0.244 3.756 5 C -0.037 4.037 6 C 0.119 3.881 7 N -0.657 5.657 8 C 0.539 3.461 9 O -0.490 6.490 10 C -0.115 4.115 11 C 0.080 3.920 12 H 0.071 0.929 13 C -0.493 4.493 14 H 0.050 0.950 15 C 0.078 3.922 16 N -0.882 5.882 17 Si 0.887 3.113 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.279 1.279 21 C -0.020 4.020 22 C -0.115 4.115 23 C -0.132 4.132 24 C -0.156 4.156 25 C -0.128 4.128 26 C -0.119 4.119 27 C 0.124 3.876 28 N -0.307 5.307 29 N -0.484 5.484 30 H 0.440 0.560 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.259 0.741 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.113 0.887 45 H 0.085 0.915 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.542 -10.113 -6.937 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.002 3.998 3 N -0.264 5.264 4 C -0.039 4.039 5 C -0.059 4.059 6 C -0.005 4.005 7 N -0.398 5.398 8 C 0.330 3.670 9 O -0.361 6.361 10 C -0.155 4.155 11 C 0.061 3.939 12 H 0.090 0.910 13 C -0.530 4.530 14 H 0.069 0.931 15 C -0.125 4.125 16 N -0.519 5.519 17 Si 0.715 3.285 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.205 1.205 21 C -0.021 4.021 22 C -0.133 4.133 23 C -0.150 4.150 24 C -0.174 4.174 25 C -0.146 4.146 26 C -0.137 4.137 27 C 0.000 4.000 28 N -0.135 5.135 29 N -0.203 5.203 30 H 0.285 0.715 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.146 0.854 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.268 -9.874 -6.156 22.509 hybrid contribution -0.411 0.299 0.402 0.648 sum -19.680 -9.574 -5.754 22.629 Atomic orbital electron populations 1.20395 0.83649 1.05035 1.04588 1.24424 0.96644 0.82908 0.95851 1.70383 1.01425 1.29484 1.25122 1.23945 0.92761 0.89892 0.97275 1.21701 0.87047 0.97938 0.99216 1.23122 0.84573 1.00472 0.92350 1.50231 1.10218 1.69206 1.10171 1.20684 0.78534 0.75719 0.92109 1.90775 1.70326 1.44942 1.30013 1.21753 0.98426 1.00824 0.94472 1.17844 0.86393 0.98735 0.90964 0.91039 1.20650 1.18362 0.94543 1.19458 0.93144 1.24810 0.94807 0.96882 0.95983 1.69905 1.17179 1.36088 1.28722 0.86751 0.77842 0.84972 0.78936 1.20223 1.21475 1.20519 1.20729 0.95767 0.91004 0.94590 1.20945 0.99898 0.99354 0.93112 1.20967 0.96247 0.99455 0.98320 1.20786 0.98875 0.99433 0.98322 1.20976 0.99349 0.99985 0.94318 1.21087 0.95794 0.99578 0.97222 1.22952 0.82131 1.02059 0.92904 1.78022 0.96411 1.12293 1.26790 1.48016 1.04361 1.10033 1.57841 0.71492 0.88959 0.89905 0.88278 0.85388 0.89500 0.89527 0.91727 0.90523 0.93108 0.86900 0.87689 0.87846 0.87673 0.86857 0.89682 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.28 2.28 8.24 -155.69 -1.28 0.99 16 3 N -0.53 -6.21 11.19 -8.16 -0.09 -6.30 16 4 C 0.24 2.97 7.21 -156.86 -1.13 1.83 16 5 C -0.04 -0.45 4.47 -90.85 -0.41 -0.86 16 6 C 0.12 1.49 8.17 -2.84 -0.02 1.47 16 7 N -0.66 -10.94 3.61 -178.22 -0.64 -11.59 16 8 C 0.54 11.51 7.80 -10.99 -0.09 11.42 16 9 O -0.49 -12.94 15.71 5.56 0.09 -12.85 16 10 C -0.11 -2.33 4.70 -27.89 -0.13 -2.46 16 11 C 0.08 1.96 1.67 -92.93 -0.16 1.80 16 12 H 0.07 2.02 6.98 -51.93 -0.36 1.66 16 13 C -0.49 -13.54 6.37 -34.44 -0.22 -13.76 16 14 H 0.05 1.37 7.82 -52.48 -0.41 0.96 16 15 C 0.08 2.26 5.45 -17.82 -0.10 2.17 16 16 N -0.88 -26.47 12.87 55.43 0.71 -25.75 16 17 Si 0.89 22.72 29.54 -169.99 -5.02 17.70 16 18 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 C -0.02 -0.46 4.77 -104.63 -0.50 -0.96 16 22 C -0.12 -2.37 8.86 -39.59 -0.35 -2.72 16 23 C -0.13 -2.41 10.05 -39.59 -0.40 -2.81 16 24 C -0.16 -2.77 10.05 -39.58 -0.40 -3.17 16 25 C -0.13 -2.42 10.05 -39.58 -0.40 -2.82 16 26 C -0.12 -2.57 9.67 -39.58 -0.38 -2.95 16 27 C 0.12 1.77 8.39 -2.97 -0.02 1.75 16 28 N -0.31 -3.58 12.39 32.42 0.40 -3.18 16 29 N -0.48 -3.86 7.45 32.62 0.24 -3.62 16 30 H 0.44 1.84 8.96 -182.34 -1.63 0.21 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.13 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.09 1.04 7.77 -51.93 -0.40 0.64 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.44 7.78 -51.93 -0.40 1.03 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.11 2.24 7.76 -52.48 -0.41 1.84 16 41 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.11 2.48 7.95 -52.49 -0.42 2.06 16 45 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 LS Contribution 393.09 15.07 5.92 5.92 Total: -1.00 -36.76 393.09 -11.81 -48.57 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.82 Total: 2.05 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -5.60 Total: -10.95 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.62 Total: -50.44 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.76 -11.81 -48.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363959297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.142 kcal (2) G-P(sol) polarization free energy of solvation -36.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds