Wall clock time and date at job start Sat Apr 11 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30829 * 125.96117 * 2 1 4 4 C 1.33241 * 109.83071 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52846 * 179.97438 * 4 3 2 6 6 C 1.53501 * 114.20450 * 240.00369 * 5 4 3 7 7 N 1.47072 * 87.98221 * 220.14627 * 6 5 4 8 8 C 1.34773 * 136.05675 * 207.08585 * 7 6 5 9 9 O 1.21276 * 119.99953 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99857 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.46766 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47562 * 304.99646 * 11 10 8 13 13 C 1.50702 * 109.47160 * 65.00414 * 11 10 8 14 14 H 1.08003 * 119.99822 * 234.67847 * 13 11 10 15 15 C 1.37880 * 119.99859 * 54.67201 * 13 11 10 16 16 N 1.31513 * 119.99942 * 4.83876 * 15 13 11 17 17 Si 1.86798 * 119.99720 * 184.83229 * 15 13 11 18 18 H 1.48498 * 109.47250 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47018 * 120.00271 * 17 15 13 20 20 H 1.48501 * 109.47138 * 240.00357 * 17 15 13 21 21 C 1.50706 * 109.47114 * 185.00101 * 11 10 8 22 22 C 1.38222 * 120.00245 * 151.50767 * 21 11 10 23 23 C 1.38240 * 120.00150 * 179.81111 * 22 21 11 24 24 C 1.38233 * 119.99760 * 0.39890 * 23 22 21 25 25 C 1.38239 * 120.00183 * 359.85544 * 24 23 22 26 26 C 1.38231 * 119.99454 * 359.95686 * 25 24 23 27 27 C 1.47067 * 87.88297 * 27.34357 * 7 6 5 28 28 N 1.30712 * 108.94647 * 0.26646 * 4 3 2 29 29 N 1.34430 * 125.96422 * 179.97438 * 2 1 3 30 30 H 0.97004 * 126.81613 * 0.02562 * 29 2 1 31 31 H 1.09001 * 109.47155 * 89.99712 * 1 2 3 32 32 H 1.08997 * 109.47206 * 210.00030 * 1 2 3 33 33 H 1.09002 * 109.47274 * 329.99882 * 1 2 3 34 34 H 1.08999 * 113.27782 * 13.07076 * 5 4 3 35 35 H 1.08994 * 113.46671 * 105.37142 * 6 5 4 36 36 H 1.08999 * 113.52205 * 334.93396 * 6 5 4 37 37 H 1.08996 * 109.47087 * 300.00268 * 10 8 7 38 38 H 1.09004 * 109.46600 * 59.99933 * 10 8 7 39 39 H 0.96998 * 119.99434 * 180.02562 * 16 15 13 40 40 H 1.08005 * 120.00577 * 0.02562 * 22 21 11 41 41 H 1.08001 * 120.00319 * 180.23001 * 23 22 21 42 42 H 1.07999 * 119.99895 * 179.83555 * 24 23 22 43 43 H 1.07992 * 119.99981 * 179.97438 * 25 24 23 44 44 H 1.08008 * 119.99839 * 180.02562 * 26 25 24 45 45 H 1.08999 * 113.46968 * 87.44078 * 27 7 6 46 46 H 1.08998 * 113.46716 * 217.87615 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6237 0.0002 6 6 5.6654 1.4642 -1.2120 7 7 6.8038 1.6428 -0.2983 8 6 8.0682 2.0983 -0.4006 9 8 8.4876 2.4881 -1.4697 10 6 8.9607 2.1231 0.8134 11 6 10.3322 2.6800 0.4266 12 1 10.7401 2.0994 -0.4007 13 6 10.1895 4.1205 0.0073 14 1 10.5570 4.4413 -0.9563 15 6 9.5895 5.0286 0.8537 16 7 9.2279 4.6606 2.0634 17 14 9.2905 6.7817 0.2821 18 1 9.7848 6.9398 -1.1092 19 1 7.8355 7.0755 0.3264 20 1 10.0131 7.7234 1.1746 21 6 11.2623 2.5910 1.6092 22 6 12.6235 2.4578 1.4094 23 6 13.4769 2.3800 2.4941 24 6 12.9682 2.4272 3.7786 25 6 11.6063 2.5551 3.9784 26 6 10.7534 2.6367 2.8937 27 6 5.9576 1.0997 0.7749 28 7 3.6194 -0.6168 -0.0048 29 7 2.2965 -1.0881 0.0005 30 1 2.0093 -2.0146 0.0006 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 4.4700 2.6560 0.2259 35 1 5.5658 2.2663 -1.9433 36 1 5.6234 0.4736 -1.6647 37 1 8.5140 2.7563 1.5799 38 1 9.0760 1.1106 1.2003 39 1 8.8055 5.2995 2.6586 40 1 13.0208 2.4180 0.4059 41 1 14.5409 2.2797 2.3381 42 1 13.6347 2.3638 4.6260 43 1 11.2089 2.5915 4.9818 44 1 9.6894 2.7371 3.0497 45 1 5.9921 0.0126 0.8468 46 1 6.1070 1.5910 1.7363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363959301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:40 Heat of formation + Delta-G solvation = 120.539538 kcal Electronic energy + Delta-G solvation = -28826.539930 eV Core-core repulsion = 24912.573235 eV Total energy + Delta-G solvation = -3913.966696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.41863 -39.81549 -38.32904 -37.10591 -34.15198 -33.29764 -32.61400 -31.05411 -29.98830 -29.69189 -28.45356 -27.81480 -26.07231 -25.46653 -23.83088 -22.35226 -21.41863 -21.21522 -20.04537 -19.51515 -18.45336 -18.00759 -16.58509 -16.10937 -16.03441 -15.70116 -15.47294 -14.99392 -14.61446 -14.57251 -13.85297 -13.77425 -13.53804 -13.45997 -13.33571 -12.75295 -12.72584 -12.46993 -12.41321 -12.17519 -12.04431 -11.86213 -11.63239 -11.44210 -11.30197 -10.95546 -10.87318 -10.72137 -10.37576 -10.24334 -10.15186 -10.12987 -9.89921 -9.59651 -9.25503 -9.13977 -8.77712 -8.40243 -8.13593 -7.76909 -7.40383 -5.93427 -4.03004 1.32280 2.35643 2.53206 2.58901 2.61859 3.31855 3.34130 3.41653 3.49180 3.59710 3.83404 4.34333 4.48093 4.49958 4.55508 4.91264 4.96536 5.01079 5.04850 5.28808 5.35119 5.39623 5.51149 5.65060 5.70709 5.84477 5.88957 5.94238 6.00670 6.04622 6.15511 6.25160 6.38453 6.42241 6.54073 6.62677 6.76917 6.77707 6.81325 7.17633 7.21008 7.30386 7.50930 7.57897 7.73106 7.88035 7.97878 8.12509 8.21603 8.37713 8.40475 8.93809 9.18091 9.60256 11.00830 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.002791 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.145336 B =10031.279807 C =10931.284897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.280 3.720 3 N -0.534 5.534 4 C 0.250 3.750 5 C -0.042 4.042 6 C 0.119 3.881 7 N -0.656 5.656 8 C 0.557 3.443 9 O -0.521 6.521 10 C -0.130 4.130 11 C 0.087 3.913 12 H 0.037 0.963 13 C -0.470 4.470 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.889 5.889 17 Si 0.891 3.109 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.286 1.286 21 C -0.027 4.027 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.154 4.154 25 C -0.143 4.143 26 C -0.068 4.068 27 C 0.119 3.881 28 N -0.308 5.308 29 N -0.485 5.485 30 H 0.439 0.561 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.133 0.867 38 H 0.052 0.948 39 H 0.260 0.740 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.140 0.860 45 H 0.086 0.914 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.698 -12.115 1.175 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.001 3.999 3 N -0.263 5.263 4 C -0.033 4.033 5 C -0.064 4.064 6 C -0.006 4.006 7 N -0.395 5.395 8 C 0.350 3.650 9 O -0.395 6.395 10 C -0.170 4.170 11 C 0.068 3.932 12 H 0.056 0.944 13 C -0.507 4.507 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.213 1.213 21 C -0.027 4.027 22 C -0.150 4.150 23 C -0.160 4.160 24 C -0.172 4.172 25 C -0.161 4.161 26 C -0.087 4.087 27 C -0.006 4.006 28 N -0.136 5.136 29 N -0.203 5.203 30 H 0.285 0.715 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.151 0.849 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.157 0.843 45 H 0.104 0.896 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.687 -11.710 0.694 18.797 hybrid contribution -0.634 0.466 -0.106 0.794 sum -15.322 -11.244 0.588 19.014 Atomic orbital electron populations 1.20391 0.83671 1.05018 1.04560 1.24420 0.96636 0.82903 0.95905 1.70375 1.01439 1.29471 1.25041 1.23828 0.92669 0.89758 0.97080 1.21520 0.86897 0.97920 1.00028 1.22755 0.82544 1.01819 0.93462 1.49772 1.11886 1.65534 1.12296 1.20869 0.78127 0.74471 0.91579 1.90631 1.72226 1.46126 1.30494 1.21894 0.98262 1.00405 0.96423 1.17661 0.88411 0.96491 0.90682 0.94442 1.21024 1.35958 0.92244 1.01512 0.92201 1.24884 0.95814 0.98616 0.94654 1.69684 1.42397 1.34579 1.06245 0.86524 0.77789 0.84829 0.78923 1.19820 1.21089 1.21260 1.20325 0.93722 0.92618 0.96070 1.20892 0.93794 1.02581 0.97696 1.20793 0.98193 1.03858 0.93129 1.20762 0.95353 1.05050 0.96083 1.21041 0.93651 1.03045 0.98391 1.21360 1.01039 0.95015 0.91255 1.22897 0.84821 0.99405 0.93477 1.78012 0.96385 1.12282 1.26954 1.48009 1.04373 1.09991 1.57938 0.71537 0.88998 0.89913 0.88278 0.85121 0.90194 0.90347 0.84945 0.92931 0.92995 0.87655 0.88108 0.88323 0.88094 0.84289 0.89571 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.51 36.00 0.38 0.08 16 2 C 0.28 2.47 8.24 -155.70 -1.28 1.19 16 3 N -0.53 -6.71 11.19 -8.16 -0.09 -6.80 16 4 C 0.25 3.28 7.30 -156.85 -1.14 2.14 16 5 C -0.04 -0.57 4.65 -91.12 -0.42 -0.99 16 6 C 0.12 1.81 8.17 -8.50 -0.07 1.75 16 7 N -0.66 -11.88 3.69 -185.06 -0.68 -12.56 16 8 C 0.56 12.51 7.83 -10.98 -0.09 12.43 16 9 O -0.52 -13.59 15.76 5.56 0.09 -13.51 16 10 C -0.13 -2.89 3.90 -27.88 -0.11 -3.00 16 11 C 0.09 2.14 1.97 -92.92 -0.18 1.95 16 12 H 0.04 0.94 7.91 -51.93 -0.41 0.53 16 13 C -0.47 -12.85 7.27 -34.44 -0.25 -13.10 16 14 H 0.06 1.73 7.82 -52.48 -0.41 1.32 16 15 C 0.06 1.60 5.12 -17.82 -0.09 1.51 16 16 N -0.89 -22.95 7.99 55.43 0.44 -22.50 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 18 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 21 C -0.03 -0.62 4.69 -104.62 -0.49 -1.11 16 22 C -0.13 -2.86 9.71 -39.59 -0.38 -3.24 16 23 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 24 C -0.15 -2.95 10.05 -39.58 -0.40 -3.35 16 25 C -0.14 -2.88 10.05 -39.58 -0.40 -3.28 16 26 C -0.07 -1.52 7.46 -39.58 -0.30 -1.82 16 27 C 0.12 1.70 7.98 -8.37 -0.07 1.63 16 28 N -0.31 -3.80 12.32 32.42 0.40 -3.40 16 29 N -0.48 -4.15 7.45 32.62 0.24 -3.90 16 30 H 0.44 2.04 8.96 -182.33 -1.63 0.40 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.13 1.78 8.14 -51.93 -0.42 1.35 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 37 H 0.13 3.10 4.71 -51.93 -0.24 2.86 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 40 H 0.11 2.18 8.06 -52.48 -0.42 1.75 16 41 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 43 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.14 3.17 5.18 -52.48 -0.27 2.90 16 45 H 0.09 1.15 7.72 -51.93 -0.40 0.75 16 46 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -33.66 382.10 -12.13 -45.79 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.58 Total: 4.71 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -5.69 Total: -10.38 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.31 Total: -49.17 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.66 -12.13 -45.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363959301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.332 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds