Wall clock time and date at job start Sat Apr 11 2020 06:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30829 * 125.96117 * 2 1 4 4 C 1.33241 * 109.83071 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.52846 * 179.97438 * 4 3 2 6 6 C 1.53501 * 114.20450 * 240.00369 * 5 4 3 7 7 N 1.47072 * 87.98221 * 220.14627 * 6 5 4 8 8 C 1.34773 * 136.05675 * 207.08585 * 7 6 5 9 9 O 1.21276 * 119.99953 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99857 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.46766 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.47562 * 304.99646 * 11 10 8 13 13 C 1.50702 * 109.47160 * 65.00414 * 11 10 8 14 14 H 1.08003 * 119.99822 * 234.67847 * 13 11 10 15 15 C 1.37880 * 119.99859 * 54.67201 * 13 11 10 16 16 N 1.31513 * 119.99942 * 4.83876 * 15 13 11 17 17 Si 1.86798 * 119.99720 * 184.83229 * 15 13 11 18 18 H 1.48498 * 109.47250 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47018 * 120.00271 * 17 15 13 20 20 H 1.48501 * 109.47138 * 240.00357 * 17 15 13 21 21 C 1.50706 * 109.47114 * 185.00101 * 11 10 8 22 22 C 1.38222 * 120.00245 * 151.50767 * 21 11 10 23 23 C 1.38240 * 120.00150 * 179.81111 * 22 21 11 24 24 C 1.38233 * 119.99760 * 0.39890 * 23 22 21 25 25 C 1.38239 * 120.00183 * 359.85544 * 24 23 22 26 26 C 1.38231 * 119.99454 * 359.95686 * 25 24 23 27 27 C 1.47067 * 87.88297 * 27.34357 * 7 6 5 28 28 N 1.30712 * 108.94647 * 0.26646 * 4 3 2 29 29 N 1.34430 * 125.96422 * 179.97438 * 2 1 3 30 30 H 0.97004 * 126.81613 * 0.02562 * 29 2 1 31 31 H 1.09001 * 109.47155 * 89.99712 * 1 2 3 32 32 H 1.08997 * 109.47206 * 210.00030 * 1 2 3 33 33 H 1.09002 * 109.47274 * 329.99882 * 1 2 3 34 34 H 1.08999 * 113.27782 * 13.07076 * 5 4 3 35 35 H 1.08994 * 113.46671 * 105.37142 * 6 5 4 36 36 H 1.08999 * 113.52205 * 334.93396 * 6 5 4 37 37 H 1.08996 * 109.47087 * 300.00268 * 10 8 7 38 38 H 1.09004 * 109.46600 * 59.99933 * 10 8 7 39 39 H 0.96998 * 119.99434 * 180.02562 * 16 15 13 40 40 H 1.08005 * 120.00577 * 0.02562 * 22 21 11 41 41 H 1.08001 * 120.00319 * 180.23001 * 23 22 21 42 42 H 1.07999 * 119.99895 * 179.83555 * 24 23 22 43 43 H 1.07992 * 119.99981 * 179.97438 * 25 24 23 44 44 H 1.08008 * 119.99839 * 180.02562 * 26 25 24 45 45 H 1.08999 * 113.46968 * 87.44078 * 27 7 6 46 46 H 1.08998 * 113.46716 * 217.87615 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7372 1.6237 0.0002 6 6 5.6654 1.4642 -1.2120 7 7 6.8038 1.6428 -0.2983 8 6 8.0682 2.0983 -0.4006 9 8 8.4876 2.4881 -1.4697 10 6 8.9607 2.1231 0.8134 11 6 10.3322 2.6800 0.4266 12 1 10.7401 2.0994 -0.4007 13 6 10.1895 4.1205 0.0073 14 1 10.5570 4.4413 -0.9563 15 6 9.5895 5.0286 0.8537 16 7 9.2279 4.6606 2.0634 17 14 9.2905 6.7817 0.2821 18 1 9.7848 6.9398 -1.1092 19 1 7.8355 7.0755 0.3264 20 1 10.0131 7.7234 1.1746 21 6 11.2623 2.5910 1.6092 22 6 12.6235 2.4578 1.4094 23 6 13.4769 2.3800 2.4941 24 6 12.9682 2.4272 3.7786 25 6 11.6063 2.5551 3.9784 26 6 10.7534 2.6367 2.8937 27 6 5.9576 1.0997 0.7749 28 7 3.6194 -0.6168 -0.0048 29 7 2.2965 -1.0881 0.0005 30 1 2.0093 -2.0146 0.0006 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 4.4700 2.6560 0.2259 35 1 5.5658 2.2663 -1.9433 36 1 5.6234 0.4736 -1.6647 37 1 8.5140 2.7563 1.5799 38 1 9.0760 1.1106 1.2003 39 1 8.8055 5.2995 2.6586 40 1 13.0208 2.4180 0.4059 41 1 14.5409 2.2797 2.3381 42 1 13.6347 2.3638 4.6260 43 1 11.2089 2.5915 4.9818 44 1 9.6894 2.7371 3.0497 45 1 5.9921 0.0126 0.8468 46 1 6.1070 1.5910 1.7363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363959301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:38 Heat of formation + Delta-G solvation = 101.010729 kcal Electronic energy + Delta-G solvation = -28827.386763 eV Core-core repulsion = 24912.573235 eV Total energy + Delta-G solvation = -3914.813528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.24672 -41.24935 -39.95664 -38.75797 -36.01448 -34.13461 -33.36151 -32.97800 -31.50850 -31.15698 -29.81645 -28.74778 -27.70146 -26.89870 -25.19857 -23.98350 -22.94810 -22.07375 -21.44187 -20.88352 -19.81159 -18.94973 -18.31204 -17.92074 -17.17088 -16.99569 -16.82252 -16.74850 -16.20973 -15.55676 -15.46004 -15.30999 -15.08713 -14.54847 -14.33035 -13.97459 -13.77776 -13.75533 -13.59035 -13.57631 -13.31732 -13.25448 -13.09940 -13.04491 -12.80941 -12.71873 -12.67698 -12.27275 -12.06713 -11.87552 -11.68714 -11.10641 -11.07726 -11.06043 -11.02769 -10.65076 -10.44215 -10.32661 -9.65128 -9.39351 -9.11544 -7.94080 -6.10153 0.54158 0.89425 1.00651 1.35604 1.39290 1.49780 1.66907 1.71612 1.91418 1.97505 2.45938 2.97979 3.19871 3.34836 3.38045 3.52764 3.77627 3.86570 4.04081 4.26732 4.33616 4.41665 4.42580 4.51251 4.52242 4.59063 4.67135 4.73846 4.75173 4.76639 4.86718 4.97041 5.06577 5.07631 5.07784 5.16107 5.24961 5.30572 5.40730 5.54115 5.62362 5.68169 5.89359 5.95098 6.09866 6.22660 6.36136 6.42379 6.58569 6.81333 6.84335 7.07574 7.45890 7.52443 8.95473 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.002791 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.145336 B =10031.279807 C =10931.284897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.289 3.711 3 N -0.571 5.571 4 C 0.238 3.762 5 C -0.024 4.024 6 C 0.118 3.882 7 N -0.661 5.661 8 C 0.551 3.449 9 O -0.571 6.571 10 C -0.118 4.118 11 C 0.088 3.912 12 H 0.013 0.987 13 C -0.493 4.493 14 H 0.027 0.973 15 C 0.035 3.965 16 N -0.884 5.884 17 Si 0.929 3.071 18 H -0.288 1.288 19 H -0.279 1.279 20 H -0.278 1.278 21 C -0.052 4.052 22 C -0.151 4.151 23 C -0.139 4.139 24 C -0.148 4.148 25 C -0.146 4.146 26 C -0.081 4.081 27 C 0.123 3.877 28 N -0.329 5.329 29 N -0.472 5.472 30 H 0.457 0.543 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.071 0.929 39 H 0.262 0.738 40 H 0.102 0.898 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.101 0.899 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.125 -13.350 3.390 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.011 3.989 3 N -0.302 5.302 4 C -0.046 4.046 5 C -0.045 4.045 6 C -0.006 4.006 7 N -0.398 5.398 8 C 0.344 3.656 9 O -0.449 6.449 10 C -0.157 4.157 11 C 0.069 3.931 12 H 0.032 0.968 13 C -0.530 4.530 14 H 0.045 0.955 15 C -0.165 4.165 16 N -0.523 5.523 17 Si 0.757 3.243 18 H -0.214 1.214 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.053 4.053 22 C -0.169 4.169 23 C -0.157 4.157 24 C -0.166 4.166 25 C -0.164 4.164 26 C -0.100 4.100 27 C 0.000 4.000 28 N -0.159 5.159 29 N -0.192 5.192 30 H 0.306 0.694 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.118 0.882 34 H 0.146 0.854 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.142 0.858 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.119 0.881 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.178 -13.001 2.951 20.963 hybrid contribution -0.273 0.730 -0.779 1.102 sum -16.451 -12.271 2.173 20.638 Atomic orbital electron populations 1.20657 0.80016 1.06626 1.06068 1.25255 0.98266 0.81895 0.93451 1.70340 1.01492 1.31488 1.26835 1.23533 0.92771 0.89880 0.98373 1.21195 0.87009 0.98147 0.98185 1.22911 0.81700 1.02121 0.93883 1.49687 1.11141 1.64139 1.14832 1.20853 0.79443 0.74458 0.90882 1.90596 1.73759 1.48657 1.31924 1.21695 0.97036 1.00963 0.96053 1.17541 0.90018 0.94732 0.90819 0.96834 1.20960 1.37368 0.94151 1.00561 0.95493 1.25231 0.95764 1.00453 0.95012 1.69762 1.41761 1.34855 1.05904 0.85943 0.77849 0.82617 0.77851 1.21360 1.20462 1.20412 1.20281 0.94223 0.94764 0.95984 1.21065 0.93743 1.03445 0.98690 1.21154 0.99535 1.02335 0.92677 1.21205 0.95449 1.02884 0.97038 1.21361 0.94127 1.02022 0.98889 1.21310 1.01031 0.96092 0.91524 1.23082 0.83891 1.00193 0.92861 1.77896 0.98697 1.11922 1.27361 1.47934 1.03120 1.11081 1.57089 0.69407 0.87337 0.86724 0.88218 0.85357 0.91008 0.89200 0.85781 0.91096 0.92774 0.87954 0.84950 0.84521 0.85488 0.85274 0.88069 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.51 71.23 0.75 0.42 16 2 C 0.29 4.45 8.24 138.23 1.14 5.59 16 3 N -0.57 -13.67 11.19 -179.72 -2.01 -15.68 16 4 C 0.24 6.05 7.30 138.63 1.01 7.06 16 5 C -0.02 -0.64 4.65 -11.12 -0.05 -0.69 16 6 C 0.12 3.66 8.17 83.18 0.68 4.34 16 7 N -0.66 -24.52 3.69 -857.79 -3.16 -27.68 16 8 C 0.55 25.86 7.83 87.66 0.69 26.55 16 9 O -0.57 -31.64 15.76 -3.02 -0.05 -31.69 16 10 C -0.12 -5.42 3.90 29.85 0.12 -5.31 16 11 C 0.09 4.56 1.97 -12.28 -0.02 4.53 16 12 H 0.01 0.72 7.91 -2.39 -0.02 0.70 16 13 C -0.49 -28.35 7.27 25.60 0.19 -28.16 16 14 H 0.03 1.67 7.82 -2.91 -0.02 1.65 16 15 C 0.03 1.91 5.12 84.66 0.43 2.35 16 16 N -0.88 -45.95 7.99 21.45 0.17 -45.78 16 17 Si 0.93 45.56 29.54 68.60 2.03 47.59 16 18 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 19 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 21 C -0.05 -2.47 4.69 -19.87 -0.09 -2.57 16 22 C -0.15 -6.62 9.71 22.27 0.22 -6.40 16 23 C -0.14 -5.13 10.05 22.27 0.22 -4.91 16 24 C -0.15 -5.14 10.05 22.27 0.22 -4.92 16 25 C -0.15 -5.53 10.05 22.27 0.22 -5.31 16 26 C -0.08 -3.59 7.46 22.27 0.17 -3.42 16 27 C 0.12 3.48 7.98 83.26 0.66 4.15 16 28 N -0.33 -7.67 12.32 -51.33 -0.63 -8.30 16 29 N -0.47 -7.01 7.45 -50.71 -0.38 -7.39 16 30 H 0.46 2.99 8.96 -213.09 -1.91 1.08 16 31 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.13 3.51 8.14 -2.39 -0.02 3.49 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.09 2.60 8.10 -2.39 -0.02 2.58 16 37 H 0.12 5.96 4.71 -2.39 -0.01 5.95 16 38 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 39 H 0.26 13.11 8.31 -92.71 -0.77 12.34 16 40 H 0.10 4.39 8.06 -2.91 -0.02 4.37 16 41 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 42 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 43 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 44 H 0.13 5.89 5.18 -2.91 -0.02 5.88 16 45 H 0.10 2.60 7.72 -2.39 -0.02 2.58 16 46 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -75.88 382.10 1.62 -74.25 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.90 Total: 21.38 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 6.55 Total: -6.70 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -6.01 Total: -104.84 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.05 Total: -31.69 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -75.88 1.62 -74.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363959301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.264 kcal (2) G-P(sol) polarization free energy of solvation -75.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds