Wall clock time and date at job start Sat Apr 11 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99890 * 2 1 4 4 C 1.52996 * 109.46962 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47423 * 63.66776 * 4 3 2 6 6 C 1.46902 * 111.00011 * 71.27592 * 5 4 3 7 7 C 1.50701 * 109.46980 * 61.96183 * 6 5 4 8 8 H 1.08003 * 119.99798 * 4.98500 * 7 6 5 9 9 C 1.37875 * 120.00289 * 184.97565 * 7 6 5 10 10 N 1.31506 * 120.00210 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99795 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47349 * 89.99641 * 11 9 7 13 13 H 1.48497 * 109.47400 * 209.99360 * 11 9 7 14 14 H 1.48503 * 109.47365 * 329.99835 * 11 9 7 15 15 C 1.38578 * 111.00194 * 195.23049 * 5 4 3 16 16 N 1.31215 * 126.47510 * 344.11605 * 15 5 4 17 17 N 1.28530 * 109.86117 * 180.25740 * 16 15 5 18 18 C 1.30294 * 110.05087 * 359.74400 * 17 16 15 19 19 C 1.50701 * 126.34335 * 179.97438 * 18 17 16 20 20 N 1.36451 * 126.47239 * 163.94531 * 15 5 4 21 21 C 1.46503 * 127.13884 * 0.02562 * 20 15 5 22 22 C 1.53004 * 109.47157 * 268.86518 * 21 20 15 23 23 S 1.81402 * 115.55049 * 184.97301 * 22 21 20 24 24 C 1.81401 * 102.99737 * 30.02026 * 23 22 21 25 25 C 1.53001 * 117.51262 * 330.66874 * 22 21 20 26 26 C 1.52997 * 117.49866 * 39.29479 * 22 21 20 27 27 H 1.08997 * 109.47514 * 59.99225 * 1 2 3 28 28 H 1.08997 * 109.46880 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46611 * 299.99686 * 1 2 3 30 30 H 1.08996 * 109.47084 * 60.00359 * 3 2 1 31 31 H 1.09003 * 109.47194 * 300.00557 * 3 2 1 32 32 H 1.09001 * 109.47186 * 303.66910 * 4 3 2 33 33 H 1.09001 * 109.47010 * 183.67229 * 4 3 2 34 34 H 1.08996 * 109.47185 * 181.96432 * 6 5 4 35 35 H 1.09001 * 109.46929 * 301.96849 * 6 5 4 36 36 H 0.97009 * 119.99972 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.47604 * 270.04218 * 19 18 17 38 38 H 1.09007 * 109.47270 * 30.04691 * 19 18 17 39 39 H 1.09002 * 109.46862 * 150.04297 * 19 18 17 40 40 H 1.08990 * 109.47356 * 148.86043 * 21 20 15 41 41 H 1.08999 * 109.46599 * 28.85900 * 21 20 15 42 42 H 1.09004 * 109.46966 * 304.55826 * 24 23 22 43 43 H 1.08996 * 109.47705 * 64.56628 * 24 23 22 44 44 H 1.09006 * 109.46703 * 184.56385 * 24 23 22 45 45 H 1.09005 * 117.49479 * 214.97191 * 25 22 21 46 46 H 1.08993 * 117.50476 * 359.97438 * 25 22 21 47 47 H 1.08994 * 117.50265 * 359.97438 * 26 22 21 48 48 H 1.09003 * 117.49478 * 144.97709 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9747 0.5338 -1.2422 6 6 3.8048 1.4290 -2.3945 7 6 4.6619 2.6546 -2.2090 8 1 5.3321 2.7222 -1.3648 9 6 4.5906 3.6896 -3.1172 10 7 5.3389 4.7589 -2.9556 11 14 3.4311 3.5729 -4.5771 12 1 2.1089 4.1376 -4.2055 13 1 3.9933 4.3389 -5.7182 14 1 3.2692 2.1495 -4.9681 15 6 5.2871 0.1011 -1.1387 16 7 6.1617 0.4720 -0.2336 17 7 7.2824 -0.1225 -0.4398 18 6 7.1884 -0.9056 -1.4769 19 6 8.2829 -1.7734 -2.0428 20 7 5.9130 -0.7937 -1.9570 21 6 5.3395 -1.4859 -3.1138 22 6 4.7406 -2.8202 -2.6644 23 16 4.1075 -3.8807 -3.9930 24 6 5.1681 -3.4491 -5.3999 25 6 5.3748 -3.5074 -1.4534 26 6 4.0006 -2.8471 -1.3256 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8530 0.5878 0.8544 33 1 3.9787 2.1783 0.0652 34 1 4.1047 0.9102 -3.3049 35 1 2.7588 1.7256 -2.4730 36 1 5.2885 5.4872 -3.5944 37 1 8.8441 -1.2105 -2.7886 38 1 8.9531 -2.0824 -1.2406 39 1 7.8430 -2.6553 -2.5086 40 1 6.1204 -1.6683 -3.8519 41 1 4.5584 -0.8678 -3.5564 42 1 5.1228 -2.3738 -5.5726 43 1 6.1960 -3.7392 -5.1826 44 1 4.8227 -3.9749 -6.2900 45 1 5.4115 -4.5968 -1.4551 46 1 6.2191 -3.0093 -0.9769 47 1 3.9407 -1.9145 -0.7647 48 1 3.1329 -3.5018 -1.2433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001381889723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:44 Heat of formation + Delta-G solvation = 86.916456 kcal Electronic energy + Delta-G solvation = -29838.175229 eV Core-core repulsion = 26058.194478 eV Total energy + Delta-G solvation = -3779.980751 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.50572 -38.05009 -37.80370 -36.48522 -33.63594 -32.64206 -31.53711 -29.64750 -29.41630 -28.20010 -27.20299 -26.24750 -25.74897 -22.93794 -22.58822 -21.99941 -21.45650 -19.86685 -19.51400 -17.34201 -17.14507 -16.50599 -16.16993 -16.03617 -15.83091 -15.10014 -14.79953 -14.67557 -14.32413 -14.10938 -13.96760 -13.72903 -13.61362 -13.37400 -13.04772 -12.83018 -12.62686 -12.51240 -12.38950 -12.14210 -11.90660 -11.65328 -11.42171 -11.32654 -11.10845 -10.98188 -10.86894 -10.74888 -10.51384 -10.38382 -10.31002 -10.16087 -9.81989 -9.69144 -9.51588 -9.30118 -8.77628 -8.74892 -7.72916 -7.45893 -6.23807 -4.26795 1.46603 2.17737 2.38228 2.88142 3.11585 3.20086 3.21299 3.51722 3.56594 4.15818 4.22611 4.40662 4.50640 4.62446 4.73130 4.79258 4.93128 4.94774 5.04408 5.06196 5.22266 5.40063 5.41925 5.50319 5.53037 5.56890 5.60135 5.64700 5.66027 5.67939 5.79159 5.81188 5.87464 5.90593 6.01046 6.07481 6.27266 6.36012 6.55857 6.60782 6.69734 6.70086 7.10172 7.23812 7.47621 7.61669 7.96876 8.26236 8.85396 9.34275 9.43163 10.88433 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008415 B = 0.005322 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.563980 B = 5260.268761 C = 5784.267390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.067 3.933 4 C 0.077 3.923 5 N -0.448 5.448 6 C 0.160 3.840 7 C -0.561 4.561 8 H 0.090 0.910 9 C 0.080 3.920 10 N -0.885 5.885 11 Si 0.870 3.130 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.266 1.266 15 C 0.412 3.588 16 N -0.325 5.325 17 N -0.283 5.283 18 C 0.152 3.848 19 C -0.060 4.060 20 N -0.474 5.474 21 C 0.152 3.848 22 C -0.132 4.132 23 S -0.186 6.186 24 C -0.136 4.136 25 C -0.159 4.159 26 C -0.123 4.123 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.025 0.975 35 H 0.043 0.957 36 H 0.266 0.734 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.101 0.899 47 H 0.122 0.878 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 -16.495 -1.683 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.010 4.010 4 C -0.050 4.050 5 N -0.172 5.172 6 C 0.035 3.965 7 C -0.600 4.600 8 H 0.108 0.892 9 C -0.124 4.124 10 N -0.522 5.522 11 Si 0.697 3.303 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.191 1.191 15 C 0.056 3.944 16 N -0.169 5.169 17 N -0.122 5.122 18 C -0.115 4.115 19 C -0.119 4.119 20 N -0.170 5.170 21 C 0.026 3.974 22 C -0.243 4.243 23 S 0.045 5.955 24 C -0.304 4.304 25 C -0.199 4.199 26 C -0.162 4.162 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.140 0.860 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.994 -16.914 -0.684 17.392 hybrid contribution -0.030 1.370 -2.239 2.625 sum -4.024 -15.544 -2.923 16.320 Atomic orbital electron populations 1.22655 0.82429 1.01963 0.99433 1.87971 1.18319 1.28141 1.95280 1.22643 0.93578 0.84440 1.00293 1.21995 0.92335 1.00770 0.89948 1.59204 1.10340 1.40329 1.07299 1.20373 0.98027 0.90915 0.87222 1.21701 1.24686 1.00510 1.13061 0.89233 1.24901 0.95169 0.94969 0.97365 1.69918 1.39004 1.06796 1.36470 0.86952 0.81670 0.78694 0.83023 1.19815 1.20985 1.19118 1.22438 0.91608 0.90768 0.89595 1.74666 0.96013 1.21469 1.24708 1.73873 1.16801 1.07878 1.13692 1.24416 0.85811 1.04239 0.97065 1.20127 0.93810 0.96531 1.01464 1.45895 1.11055 1.34547 1.25488 1.21394 0.99098 0.90713 0.86152 1.23747 1.10053 0.98217 0.92244 1.86473 1.48943 1.54258 1.05872 1.23503 1.02277 1.05484 0.99150 1.23452 0.98029 0.99977 0.98461 1.23133 0.94974 1.04048 0.94061 0.94483 0.90291 0.94761 0.92978 0.92560 0.90530 0.89258 0.95716 0.93958 0.92438 0.90305 0.89129 0.91080 0.89234 0.87304 0.90063 0.90238 0.87912 0.87856 0.88063 0.86032 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.09 10.63 -35.23 -0.37 -6.46 16 3 C 0.07 1.11 6.06 37.16 0.23 1.34 16 4 C 0.08 1.48 4.67 -3.83 -0.02 1.47 16 5 N -0.45 -9.05 4.04 -175.88 -0.71 -9.76 16 6 C 0.16 3.59 3.88 -4.97 -0.02 3.57 16 7 C -0.56 -15.04 8.09 -34.44 -0.28 -15.32 16 8 H 0.09 2.73 6.71 -52.48 -0.35 2.38 16 9 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 10 N -0.88 -26.31 13.96 55.43 0.77 -25.54 16 11 Si 0.87 20.22 27.37 -169.99 -4.65 15.56 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.27 -5.88 6.69 56.52 0.38 -5.50 16 15 C 0.41 8.53 4.33 -318.88 -1.38 7.15 16 16 N -0.32 -7.43 11.06 30.31 0.34 -7.10 16 17 N -0.28 -6.01 12.18 32.99 0.40 -5.61 16 18 C 0.15 2.64 6.37 -154.02 -0.98 1.66 16 19 C -0.06 -0.71 9.63 36.01 0.35 -0.37 16 20 N -0.47 -8.35 1.95 -114.09 -0.22 -8.57 16 21 C 0.15 2.23 5.11 -4.04 -0.02 2.21 16 22 C -0.13 -1.71 2.82 -90.62 -0.26 -1.96 16 23 S -0.19 -2.15 22.49 -107.50 -2.42 -4.57 16 24 C -0.14 -1.19 9.63 101.05 0.97 -0.22 16 25 C -0.16 -1.98 9.37 -26.73 -0.25 -2.23 16 26 C -0.12 -1.74 9.70 -26.73 -0.26 -2.00 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.98 6.56 -51.93 -0.34 0.63 16 32 H 0.08 1.46 7.80 -51.93 -0.41 1.06 16 33 H 0.09 1.96 6.42 -51.93 -0.33 1.62 16 34 H 0.03 0.56 5.51 -51.93 -0.29 0.28 16 35 H 0.04 0.93 5.69 -51.93 -0.30 0.64 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.69 7.43 -51.93 -0.39 0.30 16 40 H 0.09 1.10 6.61 -51.93 -0.34 0.76 16 41 H 0.11 1.78 6.04 -51.93 -0.31 1.47 16 42 H 0.08 0.74 7.13 -51.92 -0.37 0.37 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.75 8.14 -51.92 -0.42 0.32 16 45 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.10 1.38 5.23 -51.93 -0.27 1.11 16 47 H 0.12 2.07 5.78 -51.93 -0.30 1.77 16 48 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 387.36 15.07 5.84 5.84 Total: -1.00 -32.26 387.36 -9.32 -41.58 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.38 Total: 5.71 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.90 Total: -1.08 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.58 Total: -56.57 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.37 Total: -6.46 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.65 Total: 15.56 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -2.42 Total: -4.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.26 -9.32 -41.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381889723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.495 kcal (2) G-P(sol) polarization free energy of solvation -32.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds