Wall clock time and date at job start Sat Apr 11 2020 06:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99890 * 2 1 4 4 C 1.52996 * 109.46962 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47423 * 63.66776 * 4 3 2 6 6 C 1.46902 * 111.00011 * 71.27592 * 5 4 3 7 7 C 1.50701 * 109.46980 * 61.96183 * 6 5 4 8 8 H 1.08003 * 119.99798 * 4.98500 * 7 6 5 9 9 C 1.37875 * 120.00289 * 184.97565 * 7 6 5 10 10 N 1.31506 * 120.00210 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99795 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47349 * 89.99641 * 11 9 7 13 13 H 1.48497 * 109.47400 * 209.99360 * 11 9 7 14 14 H 1.48503 * 109.47365 * 329.99835 * 11 9 7 15 15 C 1.38578 * 111.00194 * 195.23049 * 5 4 3 16 16 N 1.31215 * 126.47510 * 344.11605 * 15 5 4 17 17 N 1.28530 * 109.86117 * 180.25740 * 16 15 5 18 18 C 1.30294 * 110.05087 * 359.74400 * 17 16 15 19 19 C 1.50701 * 126.34335 * 179.97438 * 18 17 16 20 20 N 1.36451 * 126.47239 * 163.94531 * 15 5 4 21 21 C 1.46503 * 127.13884 * 0.02562 * 20 15 5 22 22 C 1.53004 * 109.47157 * 268.86518 * 21 20 15 23 23 S 1.81402 * 115.55049 * 184.97301 * 22 21 20 24 24 C 1.81401 * 102.99737 * 30.02026 * 23 22 21 25 25 C 1.53001 * 117.51262 * 330.66874 * 22 21 20 26 26 C 1.52997 * 117.49866 * 39.29479 * 22 21 20 27 27 H 1.08997 * 109.47514 * 59.99225 * 1 2 3 28 28 H 1.08997 * 109.46880 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46611 * 299.99686 * 1 2 3 30 30 H 1.08996 * 109.47084 * 60.00359 * 3 2 1 31 31 H 1.09003 * 109.47194 * 300.00557 * 3 2 1 32 32 H 1.09001 * 109.47186 * 303.66910 * 4 3 2 33 33 H 1.09001 * 109.47010 * 183.67229 * 4 3 2 34 34 H 1.08996 * 109.47185 * 181.96432 * 6 5 4 35 35 H 1.09001 * 109.46929 * 301.96849 * 6 5 4 36 36 H 0.97009 * 119.99972 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.47604 * 270.04218 * 19 18 17 38 38 H 1.09007 * 109.47270 * 30.04691 * 19 18 17 39 39 H 1.09002 * 109.46862 * 150.04297 * 19 18 17 40 40 H 1.08990 * 109.47356 * 148.86043 * 21 20 15 41 41 H 1.08999 * 109.46599 * 28.85900 * 21 20 15 42 42 H 1.09004 * 109.46966 * 304.55826 * 24 23 22 43 43 H 1.08996 * 109.47705 * 64.56628 * 24 23 22 44 44 H 1.09006 * 109.46703 * 184.56385 * 24 23 22 45 45 H 1.09005 * 117.49479 * 214.97191 * 25 22 21 46 46 H 1.08993 * 117.50476 * 359.97438 * 25 22 21 47 47 H 1.08994 * 117.50265 * 359.97438 * 26 22 21 48 48 H 1.09003 * 117.49478 * 144.97709 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9747 0.5338 -1.2422 6 6 3.8048 1.4290 -2.3945 7 6 4.6619 2.6546 -2.2090 8 1 5.3321 2.7222 -1.3648 9 6 4.5906 3.6896 -3.1172 10 7 5.3389 4.7589 -2.9556 11 14 3.4311 3.5729 -4.5771 12 1 2.1089 4.1376 -4.2055 13 1 3.9933 4.3389 -5.7182 14 1 3.2692 2.1495 -4.9681 15 6 5.2871 0.1011 -1.1387 16 7 6.1617 0.4720 -0.2336 17 7 7.2824 -0.1225 -0.4398 18 6 7.1884 -0.9056 -1.4769 19 6 8.2829 -1.7734 -2.0428 20 7 5.9130 -0.7937 -1.9570 21 6 5.3395 -1.4859 -3.1138 22 6 4.7406 -2.8202 -2.6644 23 16 4.1075 -3.8807 -3.9930 24 6 5.1681 -3.4491 -5.3999 25 6 5.3748 -3.5074 -1.4534 26 6 4.0006 -2.8471 -1.3256 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8530 0.5878 0.8544 33 1 3.9787 2.1783 0.0652 34 1 4.1047 0.9102 -3.3049 35 1 2.7588 1.7256 -2.4730 36 1 5.2885 5.4872 -3.5944 37 1 8.8441 -1.2105 -2.7886 38 1 8.9531 -2.0824 -1.2406 39 1 7.8430 -2.6553 -2.5086 40 1 6.1204 -1.6683 -3.8519 41 1 4.5584 -0.8678 -3.5564 42 1 5.1228 -2.3738 -5.5726 43 1 6.1960 -3.7392 -5.1826 44 1 4.8227 -3.9749 -6.2900 45 1 5.4115 -4.5968 -1.4551 46 1 6.2191 -3.0093 -0.9769 47 1 3.9407 -1.9145 -0.7647 48 1 3.1329 -3.5018 -1.2433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001381889723.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:42 Heat of formation + Delta-G solvation = 66.761646 kcal Electronic energy + Delta-G solvation = -29839.049207 eV Core-core repulsion = 26058.194478 eV Total energy + Delta-G solvation = -3780.854729 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.98816 -39.50365 -38.94327 -37.90109 -34.97091 -34.70432 -32.84070 -31.04669 -30.47454 -29.65664 -28.35105 -27.68070 -26.97516 -24.66827 -23.80513 -23.26036 -22.83330 -21.24463 -20.99287 -19.26810 -18.36863 -18.01626 -17.51232 -17.33949 -16.99437 -16.58838 -16.09540 -16.01046 -15.67080 -15.44140 -15.35197 -14.84693 -14.51539 -14.46625 -14.32201 -14.13615 -13.97951 -13.74651 -13.45419 -13.43248 -13.25255 -13.06846 -12.81642 -12.62762 -12.52646 -12.45495 -12.43337 -12.09451 -11.89189 -11.82998 -11.79135 -11.44883 -11.31262 -11.22638 -10.86486 -10.79476 -10.52237 -10.35839 -9.10861 -8.60278 -8.36150 -6.44721 0.53832 0.88401 1.26084 1.30043 1.30938 1.41049 1.68415 1.96140 2.25992 2.52563 2.90633 2.97159 2.98378 3.37977 3.49819 3.60475 3.65460 3.93407 4.06997 4.10922 4.19938 4.22027 4.28631 4.31971 4.36961 4.50294 4.54845 4.60396 4.63829 4.65646 4.68479 4.70918 4.82943 4.84052 4.89697 4.91221 4.93012 4.96639 4.98318 5.04850 5.13400 5.18076 5.29006 5.72290 5.81753 6.14621 6.35515 6.39777 6.66118 7.20489 7.89776 8.80204 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.008415 B = 0.005322 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.563980 B = 5260.268761 C = 5784.267390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.078 3.922 4 C 0.082 3.918 5 N -0.434 5.434 6 C 0.172 3.828 7 C -0.557 4.557 8 H 0.038 0.962 9 C 0.020 3.980 10 N -0.940 5.940 11 Si 0.941 3.059 12 H -0.260 1.260 13 H -0.285 1.285 14 H -0.242 1.242 15 C 0.396 3.604 16 N -0.368 5.368 17 N -0.332 5.332 18 C 0.172 3.828 19 C -0.060 4.060 20 N -0.471 5.471 21 C 0.147 3.853 22 C -0.122 4.122 23 S -0.195 6.195 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.140 4.140 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.031 0.969 35 H 0.054 0.946 36 H 0.267 0.733 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 -19.423 -4.220 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.001 3.999 4 C -0.046 4.046 5 N -0.157 5.157 6 C 0.046 3.954 7 C -0.595 4.595 8 H 0.057 0.943 9 C -0.179 4.179 10 N -0.579 5.579 11 Si 0.763 3.237 12 H -0.184 1.184 13 H -0.211 1.211 14 H -0.165 1.165 15 C 0.038 3.962 16 N -0.211 5.211 17 N -0.171 5.171 18 C -0.096 4.096 19 C -0.119 4.119 20 N -0.166 5.166 21 C 0.023 3.977 22 C -0.232 4.232 23 S 0.035 5.965 24 C -0.301 4.301 25 C -0.181 4.181 26 C -0.179 4.179 27 H 0.060 0.940 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.139 0.861 45 H 0.143 0.857 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.134 -19.879 -3.206 20.780 hybrid contribution 0.401 2.210 -1.400 2.646 sum -4.732 -17.669 -4.606 18.863 Atomic orbital electron populations 1.22888 0.80129 1.03537 1.00451 1.87934 1.20765 1.27433 1.95459 1.22446 0.91358 0.85095 1.00976 1.21875 0.94520 0.98441 0.89728 1.59282 1.10368 1.39265 1.06788 1.20177 0.97458 0.89419 0.88381 1.21796 1.24095 1.02370 1.11255 0.94330 1.25851 0.97021 0.94263 1.00780 1.70094 1.41584 1.08077 1.38175 0.85818 0.79339 0.80019 0.78498 1.18443 1.21057 1.16524 1.22501 0.91626 0.91715 0.90334 1.74530 0.97171 1.22914 1.26504 1.73778 1.16735 1.10133 1.16428 1.25479 0.86473 1.02367 0.95288 1.20441 0.92437 0.96698 1.02298 1.46082 1.10920 1.33928 1.25686 1.21639 0.99599 0.90939 0.85546 1.23581 1.09320 0.97651 0.92697 1.86567 1.50116 1.53331 1.06500 1.23635 1.02622 1.05630 0.98178 1.23427 0.96368 1.00891 0.97462 1.22989 0.96396 1.03196 0.95301 0.93990 0.88500 0.93160 0.90849 0.93229 0.91081 0.92894 0.95108 0.92822 0.92388 0.88804 0.87651 0.88068 0.86300 0.88943 0.90235 0.88508 0.86109 0.85720 0.89321 0.89207 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.83 16 2 O -0.40 -12.50 10.63 -148.98 -1.58 -14.08 16 3 C 0.08 2.60 6.06 71.98 0.44 3.04 16 4 C 0.08 3.35 4.67 86.30 0.40 3.75 16 5 N -0.43 -18.07 4.04 -710.37 -2.87 -20.93 16 6 C 0.17 7.76 3.88 85.56 0.33 8.09 16 7 C -0.56 -31.01 8.09 25.60 0.21 -30.80 16 8 H 0.04 2.52 6.71 -2.91 -0.02 2.50 16 9 C 0.02 1.13 5.47 84.66 0.46 1.59 16 10 N -0.94 -58.08 13.96 21.45 0.30 -57.78 16 11 Si 0.94 41.37 27.37 68.60 1.88 43.25 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 14 H -0.24 -9.60 6.69 99.48 0.67 -8.94 16 15 C 0.40 17.01 4.33 260.11 1.13 18.14 16 16 N -0.37 -17.87 11.06 -58.01 -0.64 -18.51 16 17 N -0.33 -14.64 12.18 -49.54 -0.60 -15.24 16 18 C 0.17 5.92 6.37 137.64 0.88 6.80 16 19 C -0.06 -1.26 9.63 71.24 0.69 -0.57 16 20 N -0.47 -16.47 1.95 -514.86 -1.00 -17.48 16 21 C 0.15 4.03 5.11 86.38 0.44 4.47 16 22 C -0.12 -2.89 2.82 -10.79 -0.03 -2.92 16 23 S -0.20 -3.90 22.49 -56.49 -1.27 -5.17 16 24 C -0.13 -1.77 9.63 113.37 1.09 -0.68 16 25 C -0.14 -3.21 9.37 30.59 0.29 -2.93 16 26 C -0.14 -3.83 9.70 30.59 0.30 -3.53 16 27 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.05 1.71 6.56 -2.39 -0.02 1.69 16 32 H 0.07 2.92 7.80 -2.39 -0.02 2.90 16 33 H 0.05 2.53 6.42 -2.39 -0.02 2.52 16 34 H 0.03 1.37 5.51 -2.39 -0.01 1.36 16 35 H 0.05 2.32 5.69 -2.39 -0.01 2.31 16 36 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 37 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 39 H 0.10 1.53 7.43 -2.39 -0.02 1.51 16 40 H 0.12 2.52 6.61 -2.39 -0.02 2.50 16 41 H 0.09 2.87 6.04 -2.39 -0.01 2.86 16 42 H 0.08 1.13 7.13 -2.39 -0.02 1.11 16 43 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.12 2.32 8.14 -2.38 -0.02 2.30 16 46 H 0.09 2.27 5.23 -2.39 -0.01 2.26 16 47 H 0.09 3.11 5.78 -2.39 -0.01 3.10 16 48 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -75.73 387.36 3.00 -72.73 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.93 Total: 26.93 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 7.87 Total: 6.29 kcal Atomic # 7 Polarization: -125.13 SS G_CDS: -4.82 Total: -129.95 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -1.58 Total: -14.08 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.88 Total: 43.25 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -1.27 Total: -5.17 kcal Total: -75.73 3.00 -72.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001381889723.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.495 kcal (2) G-P(sol) polarization free energy of solvation -75.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds