Wall clock time and date at job start Sat Apr 11 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30290 * 126.35268 * 2 1 4 4 N 1.28532 * 110.05550 * 180.31570 * 3 2 1 5 5 C 1.31215 * 109.85769 * 359.71871 * 4 3 2 6 6 N 1.38582 * 126.46981 * 180.02562 * 5 4 3 7 7 C 1.46896 * 111.00115 * 106.54821 * 6 5 4 8 8 C 1.46903 * 111.00247 * 342.59378 * 6 5 4 9 9 H 1.08998 * 109.47040 * 60.00000 * 8 6 5 10 10 C 1.53002 * 109.46844 * 300.00319 * 8 6 5 11 11 C 1.50699 * 109.47024 * 180.02562 * 8 6 5 12 12 H 1.08002 * 120.00080 * 4.99866 * 11 8 6 13 13 C 1.37883 * 119.99689 * 184.99758 * 11 8 6 14 14 N 1.31516 * 119.99990 * 5.96386 * 13 11 8 15 15 Si 1.86794 * 119.99911 * 185.96007 * 13 11 8 16 16 H 1.48504 * 109.47143 * 94.99768 * 15 13 11 17 17 H 1.48501 * 109.47180 * 214.99642 * 15 13 11 18 18 H 1.48500 * 109.47333 * 334.99676 * 15 13 11 19 19 N 1.36450 * 107.05678 * 0.02562 * 5 4 3 20 20 C 1.46501 * 127.13848 * 180.02562 * 19 5 4 21 21 C 1.53009 * 109.46775 * 273.66843 * 20 19 5 22 22 S 1.81395 * 112.90467 * 165.09527 * 21 20 19 23 23 C 1.81399 * 103.00314 * 315.25125 * 22 21 20 24 24 O 1.42102 * 109.46805 * 198.86714 * 22 21 20 25 25 C 1.53776 * 113.61568 * 296.34910 * 21 20 19 26 26 C 1.53779 * 87.17331 * 139.93904 * 25 21 20 27 27 C 1.53780 * 113.61256 * 33.84756 * 21 20 19 28 28 H 1.09003 * 109.46924 * 275.60398 * 1 2 3 29 29 H 1.08996 * 109.46970 * 35.59953 * 1 2 3 30 30 H 1.08994 * 109.47301 * 155.60576 * 1 2 3 31 31 H 1.09003 * 109.46996 * 65.74128 * 7 6 5 32 32 H 1.09001 * 109.47467 * 185.74092 * 7 6 5 33 33 H 1.08995 * 109.47314 * 305.74630 * 7 6 5 34 34 H 1.09004 * 109.46955 * 305.59486 * 10 8 6 35 35 H 1.08996 * 109.47382 * 65.59733 * 10 8 6 36 36 H 1.08999 * 109.46680 * 185.60359 * 10 8 6 37 37 H 0.96999 * 119.99628 * 180.02562 * 14 13 11 38 38 H 1.08996 * 109.47187 * 153.67147 * 20 19 5 39 39 H 1.08998 * 109.46987 * 33.66386 * 20 19 5 40 40 H 1.09003 * 109.46970 * 65.53363 * 23 22 21 41 41 H 1.09003 * 109.47581 * 185.53376 * 23 22 21 42 42 H 1.08996 * 109.47240 * 305.53697 * 23 22 21 43 43 H 1.09000 * 113.61148 * 254.52813 * 25 21 20 44 44 H 1.09002 * 113.61546 * 25.34884 * 25 21 20 45 45 H 1.09000 * 113.61397 * 89.16000 * 26 25 21 46 46 H 1.08999 * 113.61073 * 220.06118 * 26 25 21 47 47 H 1.09005 * 113.61667 * 334.56575 * 27 21 20 48 48 H 1.08998 * 113.61893 * 105.38558 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0493 0.0000 4 7 3.5129 0.6887 -0.0067 5 6 3.5944 -0.6210 -0.0052 6 7 4.7579 -1.3739 -0.0104 7 6 4.9947 -1.9860 1.3038 8 6 5.9087 -0.5619 -0.4280 9 1 6.0349 0.2717 0.2628 10 6 5.6670 -0.0226 -1.8393 11 6 7.1524 -1.4127 -0.4220 12 1 7.0822 -2.4705 -0.2153 13 6 8.3802 -0.8408 -0.6805 14 7 8.4826 0.4633 -0.8161 15 14 9.8978 -1.9184 -0.8380 16 1 10.1377 -2.2293 -2.2702 17 1 11.0739 -1.2011 -0.2835 18 1 9.6885 -3.1814 -0.0856 19 7 2.3174 -1.1014 0.0023 20 6 1.9008 -2.5060 0.0071 21 6 1.8368 -3.0237 -1.4313 22 16 1.7555 -4.8333 -1.5273 23 6 3.0130 -5.3624 -0.3318 24 8 2.1333 -5.2559 -2.8304 25 6 0.7820 -2.3130 -2.2955 26 6 1.8068 -2.3494 -3.4415 27 6 2.8978 -2.4048 -2.3566 28 1 -0.3633 0.1004 1.0228 29 1 -0.3633 0.8356 -0.5982 30 1 -0.3633 -0.9359 -0.4244 31 1 4.2103 -2.7136 1.5124 32 1 5.9632 -2.4861 1.3025 33 1 4.9862 -1.2125 2.0717 34 1 5.4423 -0.8509 -2.5112 35 1 4.8265 0.6713 -1.8241 36 1 6.5601 0.4960 -2.1879 37 1 9.3463 0.8655 -0.9983 38 1 0.9169 -2.5916 0.4681 39 1 2.6204 -3.0964 0.5740 40 1 2.7066 -5.0681 0.6720 41 1 3.1226 -6.4460 -0.3752 42 1 3.9655 -4.8909 -0.5738 43 1 -0.1060 -2.9161 -2.4846 44 1 0.5445 -1.3054 -1.9540 45 1 1.7497 -3.2521 -4.0498 46 1 1.8282 -1.4369 -4.0372 47 1 3.2398 -1.4219 -2.0326 48 1 3.7186 -3.0816 -2.5938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001395840410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:48 Heat of formation + Delta-G solvation = 95.956465 kcal Electronic energy + Delta-G solvation = -30373.556869 eV Core-core repulsion = 26593.968122 eV Total energy + Delta-G solvation = -3779.588746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.68765 -38.95313 -37.15661 -35.88615 -34.28602 -32.95566 -31.50122 -29.69575 -29.38424 -28.24776 -27.38677 -25.80010 -25.16616 -24.44798 -23.52060 -21.85563 -20.81513 -19.83396 -19.29790 -17.30672 -16.87303 -16.76154 -16.13717 -15.75331 -15.40422 -15.10389 -14.67452 -14.42719 -14.32818 -14.00982 -13.87899 -13.77734 -13.41510 -13.11887 -13.04418 -12.73863 -12.63690 -12.45009 -12.18860 -11.96922 -11.91101 -11.61301 -11.38254 -11.19472 -11.01422 -10.96817 -10.78154 -10.59846 -10.43624 -10.36515 -10.28032 -10.16543 -9.93333 -9.88536 -9.64347 -9.20289 -8.69038 -8.47252 -8.41753 -7.47351 -6.09764 -4.15159 1.35685 2.13374 2.37515 2.73388 3.25742 3.33264 3.34255 3.37159 3.58883 4.07635 4.30107 4.42489 4.55641 4.61140 4.68796 4.80200 4.85499 5.02415 5.06193 5.08278 5.17037 5.23994 5.32863 5.41852 5.51534 5.60377 5.70563 5.82490 5.87659 5.89326 5.96619 6.03830 6.07750 6.18416 6.23788 6.33833 6.48837 6.50508 6.88129 6.90102 7.05494 7.17906 7.41013 7.61917 7.70283 7.89154 8.12474 8.41932 8.87590 9.33386 9.49087 10.98474 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.005016 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.813076 B = 5580.973465 C = 6947.682151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.148 3.852 3 N -0.289 5.289 4 N -0.316 5.316 5 C 0.385 3.615 6 N -0.459 5.459 7 C 0.037 3.963 8 C 0.230 3.770 9 H 0.030 0.970 10 C -0.130 4.130 11 C -0.518 4.518 12 H 0.063 0.937 13 C 0.066 3.934 14 N -0.881 5.881 15 Si 0.896 3.104 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 N -0.477 5.477 20 C 0.147 3.853 21 C -0.430 4.430 22 S 1.272 4.728 23 C -0.493 4.493 24 O -0.836 6.836 25 C -0.098 4.098 26 C -0.153 4.153 27 C -0.101 4.101 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.028 0.972 34 H 0.026 0.974 35 H 0.028 0.972 36 H 0.074 0.926 37 H 0.263 0.737 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.100 0.900 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.652 -10.758 3.899 23.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.119 4.119 3 N -0.129 5.129 4 N -0.159 5.159 5 C 0.029 3.971 6 N -0.185 5.185 7 C -0.110 4.110 8 C 0.126 3.874 9 H 0.048 0.952 10 C -0.189 4.189 11 C -0.557 4.557 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.519 5.519 15 Si 0.724 3.276 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 N -0.174 5.174 20 C 0.022 3.978 21 C -0.527 4.527 22 S 1.468 4.532 23 C -0.651 4.651 24 O -0.832 6.832 25 C -0.136 4.136 26 C -0.191 4.191 27 C -0.139 4.139 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.086 0.914 47 H 0.118 0.882 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.663 -10.094 2.954 23.186 hybrid contribution 2.851 -0.565 -0.146 2.910 sum -17.812 -10.658 2.808 20.946 Atomic orbital electron populations 1.20209 0.84571 1.03815 1.03619 1.24531 0.96151 0.82873 1.08339 1.73968 0.97044 1.24303 1.17609 1.74835 1.10660 1.07727 1.22727 1.23037 0.85117 0.89217 0.99682 1.59230 1.00748 1.32311 1.26180 1.22355 1.02934 0.98116 0.87596 1.19312 0.83223 0.91228 0.93684 0.95239 1.21787 1.00766 0.98508 0.97789 1.21007 0.90242 0.94839 1.49571 0.91871 1.24898 0.98793 0.94913 0.95115 1.69980 1.24962 1.09209 1.47700 0.86525 0.82421 0.80335 0.78351 1.20662 1.21171 1.19901 1.46216 1.06172 1.07436 1.57597 1.21374 1.02192 0.79400 0.94834 1.29684 1.05350 1.18879 0.98758 1.70116 1.09462 0.83890 0.89687 1.27659 1.15580 1.08664 1.13184 1.93135 1.82159 1.73632 1.34226 1.22680 0.95146 1.00720 0.95088 1.23032 0.96357 1.02922 0.96772 1.22874 0.94704 1.02966 0.93331 0.90207 0.89284 0.90455 0.93718 0.88194 0.95330 0.95477 0.95329 0.90678 0.92708 0.87993 0.88402 0.86971 0.87666 0.88454 0.90816 0.88866 0.89036 0.91382 0.88226 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 9.38 36.00 0.34 -0.22 16 2 C 0.15 2.21 7.17 -154.02 -1.10 1.10 16 3 N -0.29 -5.73 12.18 32.99 0.40 -5.33 16 4 N -0.32 -7.12 9.81 30.31 0.30 -6.83 16 5 C 0.38 7.57 3.92 -318.88 -1.25 6.32 16 6 N -0.46 -9.52 4.30 -176.08 -0.76 -10.28 16 7 C 0.04 0.68 9.30 60.06 0.56 1.24 16 8 C 0.23 5.83 1.60 -68.86 -0.11 5.72 16 9 H 0.03 0.87 7.92 -51.93 -0.41 0.46 16 10 C -0.13 -3.36 8.43 37.16 0.31 -3.04 16 11 C -0.52 -13.77 7.60 -34.44 -0.26 -14.03 16 12 H 0.06 1.63 6.68 -52.49 -0.35 1.28 16 13 C 0.07 1.81 5.21 -17.82 -0.09 1.71 16 14 N -0.88 -25.41 11.96 55.43 0.66 -24.75 16 15 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 N -0.48 -7.06 2.04 -114.08 -0.23 -7.30 16 20 C 0.15 1.46 5.44 -4.04 -0.02 1.44 16 21 C -0.43 -4.57 1.29 -89.81 -0.12 -4.69 16 22 S 1.27 10.94 13.40 -107.50 -1.44 9.50 16 23 C -0.49 -4.17 9.70 101.05 0.98 -3.19 16 24 O -0.84 -12.61 16.30 -35.23 -0.57 -13.18 16 25 C -0.10 -0.98 6.76 -25.92 -0.18 -1.15 16 26 C -0.15 -2.11 7.70 -25.83 -0.20 -2.31 16 27 C -0.10 -1.60 6.51 -25.83 -0.17 -1.77 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.48 5.78 -51.93 -0.30 0.18 16 31 H 0.04 0.62 6.24 -51.93 -0.32 0.30 16 32 H 0.10 1.90 6.04 -51.93 -0.31 1.59 16 33 H 0.03 0.54 8.10 -51.93 -0.42 0.11 16 34 H 0.03 0.67 7.90 -51.93 -0.41 0.26 16 35 H 0.03 0.72 6.26 -51.93 -0.33 0.40 16 36 H 0.07 2.10 6.61 -51.93 -0.34 1.76 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.10 0.56 7.57 -51.93 -0.39 0.17 16 39 H 0.10 0.93 4.07 -51.93 -0.21 0.72 16 40 H 0.11 0.61 7.12 -51.92 -0.37 0.24 16 41 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 44 H 0.09 0.95 4.55 -51.93 -0.24 0.72 16 45 H 0.09 1.33 6.94 -51.93 -0.36 0.97 16 46 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.10 1.90 4.34 -51.93 -0.23 1.68 16 48 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -37.56 372.16 -9.45 -47.01 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.08 Total: 2.32 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -1.31 Total: -12.88 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.37 Total: -54.48 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.57 Total: -13.18 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 10.94 SS G_CDS: -1.44 Total: 9.50 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.56 -9.45 -47.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395840410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.964 kcal (2) G-P(sol) polarization free energy of solvation -37.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds