Wall clock time and date at job start Sat Apr 11 2020 06:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30290 * 126.35268 * 2 1 4 4 N 1.28532 * 110.05550 * 180.31570 * 3 2 1 5 5 C 1.31215 * 109.85769 * 359.71871 * 4 3 2 6 6 N 1.38582 * 126.46981 * 180.02562 * 5 4 3 7 7 C 1.46896 * 111.00115 * 106.54821 * 6 5 4 8 8 C 1.46903 * 111.00247 * 342.59378 * 6 5 4 9 9 H 1.08998 * 109.47040 * 60.00000 * 8 6 5 10 10 C 1.53002 * 109.46844 * 300.00319 * 8 6 5 11 11 C 1.50699 * 109.47024 * 180.02562 * 8 6 5 12 12 H 1.08002 * 120.00080 * 4.99866 * 11 8 6 13 13 C 1.37883 * 119.99689 * 184.99758 * 11 8 6 14 14 N 1.31516 * 119.99990 * 5.96386 * 13 11 8 15 15 Si 1.86794 * 119.99911 * 185.96007 * 13 11 8 16 16 H 1.48504 * 109.47143 * 94.99768 * 15 13 11 17 17 H 1.48501 * 109.47180 * 214.99642 * 15 13 11 18 18 H 1.48500 * 109.47333 * 334.99676 * 15 13 11 19 19 N 1.36450 * 107.05678 * 0.02562 * 5 4 3 20 20 C 1.46501 * 127.13848 * 180.02562 * 19 5 4 21 21 C 1.53009 * 109.46775 * 273.66843 * 20 19 5 22 22 S 1.81395 * 112.90467 * 165.09527 * 21 20 19 23 23 C 1.81399 * 103.00314 * 315.25125 * 22 21 20 24 24 O 1.42102 * 109.46805 * 198.86714 * 22 21 20 25 25 C 1.53776 * 113.61568 * 296.34910 * 21 20 19 26 26 C 1.53779 * 87.17331 * 139.93904 * 25 21 20 27 27 C 1.53780 * 113.61256 * 33.84756 * 21 20 19 28 28 H 1.09003 * 109.46924 * 275.60398 * 1 2 3 29 29 H 1.08996 * 109.46970 * 35.59953 * 1 2 3 30 30 H 1.08994 * 109.47301 * 155.60576 * 1 2 3 31 31 H 1.09003 * 109.46996 * 65.74128 * 7 6 5 32 32 H 1.09001 * 109.47467 * 185.74092 * 7 6 5 33 33 H 1.08995 * 109.47314 * 305.74630 * 7 6 5 34 34 H 1.09004 * 109.46955 * 305.59486 * 10 8 6 35 35 H 1.08996 * 109.47382 * 65.59733 * 10 8 6 36 36 H 1.08999 * 109.46680 * 185.60359 * 10 8 6 37 37 H 0.96999 * 119.99628 * 180.02562 * 14 13 11 38 38 H 1.08996 * 109.47187 * 153.67147 * 20 19 5 39 39 H 1.08998 * 109.46987 * 33.66386 * 20 19 5 40 40 H 1.09003 * 109.46970 * 65.53363 * 23 22 21 41 41 H 1.09003 * 109.47581 * 185.53376 * 23 22 21 42 42 H 1.08996 * 109.47240 * 305.53697 * 23 22 21 43 43 H 1.09000 * 113.61148 * 254.52813 * 25 21 20 44 44 H 1.09002 * 113.61546 * 25.34884 * 25 21 20 45 45 H 1.09000 * 113.61397 * 89.16000 * 26 25 21 46 46 H 1.08999 * 113.61073 * 220.06118 * 26 25 21 47 47 H 1.09005 * 113.61667 * 334.56575 * 27 21 20 48 48 H 1.08998 * 113.61893 * 105.38558 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0493 0.0000 4 7 3.5129 0.6887 -0.0067 5 6 3.5944 -0.6210 -0.0052 6 7 4.7579 -1.3739 -0.0104 7 6 4.9947 -1.9860 1.3038 8 6 5.9087 -0.5619 -0.4280 9 1 6.0349 0.2717 0.2628 10 6 5.6670 -0.0226 -1.8393 11 6 7.1524 -1.4127 -0.4220 12 1 7.0822 -2.4705 -0.2153 13 6 8.3802 -0.8408 -0.6805 14 7 8.4826 0.4633 -0.8161 15 14 9.8978 -1.9184 -0.8380 16 1 10.1377 -2.2293 -2.2702 17 1 11.0739 -1.2011 -0.2835 18 1 9.6885 -3.1814 -0.0856 19 7 2.3174 -1.1014 0.0023 20 6 1.9008 -2.5060 0.0071 21 6 1.8368 -3.0237 -1.4313 22 16 1.7555 -4.8333 -1.5273 23 6 3.0130 -5.3624 -0.3318 24 8 2.1333 -5.2559 -2.8304 25 6 0.7820 -2.3130 -2.2955 26 6 1.8068 -2.3494 -3.4415 27 6 2.8978 -2.4048 -2.3566 28 1 -0.3633 0.1004 1.0228 29 1 -0.3633 0.8356 -0.5982 30 1 -0.3633 -0.9359 -0.4244 31 1 4.2103 -2.7136 1.5124 32 1 5.9632 -2.4861 1.3025 33 1 4.9862 -1.2125 2.0717 34 1 5.4423 -0.8509 -2.5112 35 1 4.8265 0.6713 -1.8241 36 1 6.5601 0.4960 -2.1879 37 1 9.3463 0.8655 -0.9983 38 1 0.9169 -2.5916 0.4681 39 1 2.6204 -3.0964 0.5740 40 1 2.7066 -5.0681 0.6720 41 1 3.1226 -6.4460 -0.3752 42 1 3.9655 -4.8909 -0.5738 43 1 -0.1060 -2.9161 -2.4846 44 1 0.5445 -1.3054 -1.9540 45 1 1.7497 -3.2521 -4.0498 46 1 1.8282 -1.4369 -4.0372 47 1 3.2398 -1.4219 -2.0326 48 1 3.7186 -3.0816 -2.5938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001395840410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:46 Heat of formation + Delta-G solvation = 68.413779 kcal Electronic energy + Delta-G solvation = -30374.751209 eV Core-core repulsion = 26593.968122 eV Total energy + Delta-G solvation = -3780.783087 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.00194 -39.98507 -38.86760 -36.90945 -35.51889 -34.88395 -32.66307 -31.35446 -30.56990 -29.16236 -28.63965 -27.26782 -26.62027 -26.07154 -24.60819 -23.56226 -21.95514 -21.22656 -20.58623 -18.60145 -18.11581 -17.87111 -17.68101 -17.13137 -16.87176 -16.37779 -15.98956 -15.61018 -15.55586 -15.30606 -14.94950 -14.84585 -14.51881 -14.40936 -14.24369 -14.01150 -13.77531 -13.43867 -13.40026 -13.15450 -13.03259 -12.96643 -12.86592 -12.71531 -12.53771 -12.42368 -12.36360 -12.25424 -12.16393 -12.09894 -11.82109 -11.43810 -11.31617 -11.06240 -10.90380 -10.82122 -10.66099 -10.24505 -9.30492 -9.08035 -8.22125 -6.34612 0.58932 0.93951 1.35422 1.37621 1.42614 1.48434 1.72275 1.98941 2.34630 2.75986 3.04630 3.11257 3.19616 3.50421 3.64651 3.73894 3.80554 3.90567 4.07821 4.23453 4.29763 4.37099 4.37843 4.51033 4.52735 4.63071 4.69308 4.71084 4.76103 4.78647 4.83910 4.88495 4.90595 4.92567 5.02060 5.11021 5.12946 5.16098 5.20480 5.24457 5.33479 5.37770 5.53270 5.59886 5.88198 6.00757 6.11524 6.63415 6.77087 7.33702 7.96580 8.87047 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011316 B = 0.005016 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.813076 B = 5580.973465 C = 6947.682151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.181 3.819 3 N -0.346 5.346 4 N -0.376 5.376 5 C 0.369 3.631 6 N -0.455 5.455 7 C 0.037 3.963 8 C 0.245 3.755 9 H -0.020 1.020 10 C -0.108 4.108 11 C -0.524 4.524 12 H 0.071 0.929 13 C 0.014 3.986 14 N -0.919 5.919 15 Si 0.963 3.037 16 H -0.282 1.282 17 H -0.283 1.283 18 H -0.258 1.258 19 N -0.466 5.466 20 C 0.129 3.871 21 C -0.418 4.418 22 S 1.357 4.643 23 C -0.500 4.500 24 O -0.902 6.902 25 C -0.080 4.080 26 C -0.161 4.161 27 C -0.118 4.118 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.013 0.987 34 H 0.023 0.977 35 H 0.022 0.978 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.170 0.830 39 H 0.106 0.894 40 H 0.153 0.847 41 H 0.116 0.884 42 H 0.061 0.939 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.065 0.935 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.442 -13.955 5.682 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 N -0.185 5.185 4 N -0.219 5.219 5 C 0.011 3.989 6 N -0.179 5.179 7 C -0.110 4.110 8 C 0.139 3.861 9 H -0.002 1.002 10 C -0.166 4.166 11 C -0.563 4.563 12 H 0.089 0.911 13 C -0.186 4.186 14 N -0.558 5.558 15 Si 0.788 3.212 16 H -0.208 1.208 17 H -0.208 1.208 18 H -0.182 1.182 19 N -0.161 5.161 20 C 0.007 3.993 21 C -0.514 4.514 22 S 1.553 4.447 23 C -0.658 4.658 24 O -0.898 6.898 25 C -0.118 4.118 26 C -0.199 4.199 27 C -0.157 4.157 28 H 0.127 0.873 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.188 0.812 39 H 0.124 0.876 40 H 0.172 0.828 41 H 0.135 0.865 42 H 0.080 0.920 43 H 0.139 0.861 44 H 0.114 0.886 45 H 0.101 0.899 46 H 0.070 0.930 47 H 0.084 0.916 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -24.493 -13.305 4.742 28.274 hybrid contribution 3.939 0.416 -0.692 4.021 sum -20.554 -12.889 4.050 24.597 Atomic orbital electron populations 1.20621 0.79591 1.06233 1.05953 1.25729 0.98260 0.81563 1.03280 1.73853 0.96697 1.26826 1.21139 1.74669 1.12853 1.09892 1.24459 1.22771 0.86303 0.88861 1.00915 1.59101 0.99881 1.31318 1.27627 1.22442 1.04189 0.98357 0.85976 1.18813 0.85251 0.90166 0.91852 1.00226 1.21514 0.98874 0.97786 0.98428 1.21308 0.90863 0.95194 1.48914 0.91125 1.25774 1.02026 0.96032 0.94749 1.70134 1.25634 1.11132 1.48892 0.85466 0.78508 0.79036 0.78176 1.20778 1.20831 1.18232 1.46353 1.04019 1.09390 1.56366 1.22059 1.06005 0.76571 0.94645 1.29787 1.02633 1.20316 0.98622 1.69288 1.07832 0.80747 0.86842 1.27765 1.13487 1.09373 1.15217 1.93018 1.83566 1.74870 1.38297 1.22691 0.95630 1.01655 0.91816 1.23042 0.97701 1.01723 0.97405 1.22766 0.95231 1.00777 0.96906 0.87344 0.88849 0.86439 0.88682 0.89502 0.96850 0.95776 0.95931 0.93625 0.92790 0.81213 0.87581 0.82835 0.86492 0.91989 0.86062 0.88647 0.89884 0.92981 0.91623 0.95419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 9.38 71.24 0.67 -0.14 16 2 C 0.18 4.93 7.17 137.64 0.99 5.91 16 3 N -0.35 -13.91 12.18 -49.54 -0.60 -14.51 16 4 N -0.38 -17.78 9.81 -58.01 -0.57 -18.35 16 5 C 0.37 14.78 3.92 260.11 1.02 15.80 16 6 N -0.45 -19.46 4.30 -711.01 -3.06 -22.52 16 7 C 0.04 1.34 9.30 127.69 1.19 2.53 16 8 C 0.25 13.26 1.60 44.17 0.07 13.33 16 9 H -0.02 -1.27 7.92 -2.39 -0.02 -1.29 16 10 C -0.11 -6.00 8.43 71.98 0.61 -5.40 16 11 C -0.52 -29.03 7.60 25.60 0.19 -28.83 16 12 H 0.07 3.73 6.68 -2.91 -0.02 3.71 16 13 C 0.01 0.79 5.21 84.66 0.44 1.23 16 14 N -0.92 -55.84 11.96 21.45 0.26 -55.58 16 15 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 19 N -0.47 -12.70 2.04 -514.85 -1.05 -13.75 16 20 C 0.13 1.94 5.44 86.38 0.47 2.41 16 21 C -0.42 -7.51 1.29 -10.27 -0.01 -7.53 16 22 S 1.36 18.47 13.40 -56.49 -0.76 17.71 16 23 C -0.50 -6.64 9.70 113.37 1.10 -5.54 16 24 O -0.90 -25.94 16.30 -148.98 -2.43 -28.37 16 25 C -0.08 -1.26 6.76 31.12 0.21 -1.05 16 26 C -0.16 -4.38 7.70 31.18 0.24 -4.14 16 27 C -0.12 -3.81 6.51 31.18 0.20 -3.61 16 28 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.12 0.54 5.78 -2.39 -0.01 0.52 16 31 H 0.09 2.39 6.24 -2.39 -0.01 2.38 16 32 H 0.09 3.33 6.04 -2.39 -0.01 3.32 16 33 H 0.01 0.50 8.10 -2.39 -0.02 0.48 16 34 H 0.02 1.29 7.90 -2.38 -0.02 1.27 16 35 H 0.02 1.24 6.26 -2.39 -0.01 1.22 16 36 H 0.04 2.76 6.61 -2.39 -0.02 2.74 16 37 H 0.26 15.16 8.31 -92.71 -0.77 14.38 16 38 H 0.17 0.38 7.57 -2.39 -0.02 0.36 16 39 H 0.11 1.46 4.07 -2.39 -0.01 1.45 16 40 H 0.15 0.74 7.12 -2.39 -0.02 0.72 16 41 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.12 0.87 8.10 -2.39 -0.02 0.85 16 44 H 0.10 1.50 4.55 -2.39 -0.01 1.49 16 45 H 0.08 2.41 6.94 -2.39 -0.02 2.39 16 46 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.07 2.61 4.34 -2.38 -0.01 2.60 16 48 H 0.03 1.07 8.07 -2.39 -0.02 1.05 16 Total: -1.00 -95.14 372.16 2.18 -92.96 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.98 Total: 11.05 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 7.38 Total: -15.04 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -5.02 Total: -124.71 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -2.43 Total: -28.37 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 18.47 SS G_CDS: -0.76 Total: 17.71 kcal Total: -95.14 2.18 -92.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395840410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.370 kcal (2) G-P(sol) polarization free energy of solvation -95.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds