Wall clock time and date at job start Sat Apr 11 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30297 * 126.35033 * 2 1 4 4 N 1.28529 * 110.05225 * 180.31094 * 3 2 1 5 5 C 1.31221 * 109.86237 * 359.71348 * 4 3 2 6 6 N 1.38576 * 126.47415 * 180.02562 * 5 4 3 7 7 C 1.46894 * 110.99896 * 109.89947 * 6 5 4 8 8 C 1.46904 * 110.99694 * 345.94646 * 6 5 4 9 9 H 1.08996 * 109.47294 * 309.99976 * 8 6 5 10 10 C 1.52998 * 109.47029 * 70.00390 * 8 6 5 11 11 C 1.50702 * 109.46725 * 189.99930 * 8 6 5 12 12 H 1.08000 * 120.00322 * 0.02562 * 11 8 6 13 13 C 1.37879 * 120.00074 * 179.97438 * 11 8 6 14 14 N 1.31520 * 119.99806 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 120.00530 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47268 * 89.99886 * 15 13 11 17 17 H 1.48498 * 109.47501 * 210.00460 * 15 13 11 18 18 H 1.48507 * 109.46686 * 330.00486 * 15 13 11 19 19 N 1.36456 * 107.05228 * 0.02562 * 5 4 3 20 20 C 1.46496 * 127.13489 * 179.97438 * 19 5 4 21 21 C 1.53000 * 109.47197 * 271.06629 * 20 19 5 22 22 S 1.81394 * 112.90900 * 190.96767 * 21 20 19 23 23 C 1.81398 * 103.00201 * 46.56974 * 22 21 20 24 24 O 1.42101 * 109.47007 * 290.18346 * 22 21 20 25 25 C 1.53779 * 113.61332 * 59.71676 * 21 20 19 26 26 C 1.53786 * 87.17397 * 270.83903 * 25 21 20 27 27 C 1.53785 * 113.61494 * 322.22129 * 21 20 19 28 28 H 1.09007 * 109.47461 * 275.62362 * 1 2 3 29 29 H 1.09002 * 109.47075 * 35.61453 * 1 2 3 30 30 H 1.08996 * 109.47657 * 155.61452 * 1 2 3 31 31 H 1.08995 * 109.47228 * 63.18158 * 7 6 5 32 32 H 1.09007 * 109.47140 * 183.17573 * 7 6 5 33 33 H 1.08997 * 109.47428 * 303.17513 * 7 6 5 34 34 H 1.09003 * 109.46813 * 299.99467 * 10 8 6 35 35 H 1.08996 * 109.47421 * 59.99664 * 10 8 6 36 36 H 1.09004 * 109.47153 * 180.02562 * 10 8 6 37 37 H 0.96998 * 119.99955 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46756 * 151.06780 * 20 19 5 39 39 H 1.08998 * 109.47371 * 31.06963 * 20 19 5 40 40 H 1.09003 * 109.47175 * 62.86348 * 23 22 21 41 41 H 1.09004 * 109.47555 * 182.86610 * 23 22 21 42 42 H 1.08999 * 109.46922 * 302.86726 * 23 22 21 43 43 H 1.08999 * 113.61741 * 25.42801 * 25 21 20 44 44 H 1.09004 * 113.61414 * 156.25356 * 25 21 20 45 45 H 1.09006 * 113.60837 * 89.15570 * 26 25 21 46 46 H 1.08991 * 113.61635 * 220.05777 * 26 25 21 47 47 H 1.09002 * 113.60898 * 203.66339 * 27 21 20 48 48 H 1.08994 * 113.61510 * 334.47873 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6887 -0.0066 5 6 3.5945 -0.6209 -0.0050 6 7 4.7579 -1.3738 -0.0100 7 6 4.9531 -2.0497 1.2795 8 6 5.9208 -0.5434 -0.3505 9 1 5.7073 0.0281 -1.2538 10 6 6.2167 0.4174 0.8029 11 6 7.1177 -1.4281 -0.5870 12 1 7.0238 -2.4999 -0.4940 13 6 8.3325 -0.8691 -0.9230 14 7 8.4468 0.4362 -1.0367 15 14 9.8160 -1.9656 -1.2168 16 1 9.8748 -2.3450 -2.6513 17 1 11.0539 -1.2332 -0.8474 18 1 9.6986 -3.1904 -0.3852 19 7 2.3173 -1.1014 0.0026 20 6 1.9008 -2.5059 0.0065 21 6 1.7737 -3.0042 -1.4345 22 16 0.9638 -4.6229 -1.5531 23 6 -0.4796 -4.4374 -0.4701 24 8 1.8252 -5.6232 -1.0269 25 6 3.0823 -2.9099 -2.2366 26 6 2.6467 -1.4898 -2.6351 27 6 1.1980 -1.9551 -2.4005 28 1 -0.3634 0.1007 1.0228 29 1 -0.3633 0.8355 -0.5984 30 1 -0.3634 -0.9359 -0.4243 31 1 4.1379 -2.7534 1.4480 32 1 5.9010 -2.5879 1.2679 33 1 4.9653 -1.3095 2.0796 34 1 5.3510 1.0572 0.9739 35 1 6.4302 -0.1541 1.7061 36 1 7.0793 1.0339 0.5500 37 1 9.3015 0.8295 -1.2727 38 1 0.9380 -2.5979 0.5091 39 1 2.6443 -3.1039 0.5334 40 1 -1.1338 -3.6609 -0.8665 41 1 -1.0228 -5.3814 -0.4236 42 1 -0.1495 -4.1585 0.5306 43 1 3.9778 -2.9338 -1.6157 44 1 3.1307 -3.6034 -3.0762 45 1 2.9764 -0.7201 -1.9372 46 1 2.8639 -1.2418 -3.6739 47 1 0.7308 -2.3867 -3.2857 48 1 0.5711 -1.2092 -1.9120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001395840417.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:52 Heat of formation + Delta-G solvation = 111.425256 kcal Electronic energy + Delta-G solvation = -30353.325913 eV Core-core repulsion = 26574.407943 eV Total energy + Delta-G solvation = -3778.917969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.90610 -38.93367 -37.34962 -35.87224 -34.07500 -32.93239 -31.50963 -29.86747 -28.74505 -28.41242 -27.34039 -25.67904 -25.24649 -24.90954 -23.93991 -21.71285 -20.72053 -19.66967 -18.95244 -17.81418 -17.03284 -16.57899 -16.19254 -15.72150 -15.40755 -15.00809 -14.64105 -14.51379 -14.32714 -14.17042 -13.70843 -13.61050 -13.44281 -13.35310 -12.87598 -12.77617 -12.67185 -12.43370 -12.35292 -12.12944 -11.73689 -11.51644 -11.43254 -11.26497 -11.14043 -10.90280 -10.79766 -10.73527 -10.48731 -10.24262 -10.15551 -10.05376 -9.84104 -9.75581 -9.63600 -8.88213 -8.84580 -8.47372 -8.39345 -7.41434 -6.02783 -4.09636 1.29566 2.09843 2.31397 2.72807 3.29989 3.36029 3.36679 3.39292 3.50065 4.13515 4.32443 4.35130 4.46444 4.58082 4.63922 4.78511 4.82775 4.91223 4.96478 5.03439 5.12296 5.28885 5.37746 5.41359 5.52811 5.59026 5.60848 5.66171 5.78707 5.88845 6.01795 6.08777 6.18610 6.26247 6.31523 6.44734 6.48430 6.61151 6.80984 6.98576 7.11231 7.24267 7.47370 7.63123 7.76164 7.97220 8.28803 8.45950 8.92419 9.33280 9.55056 11.03396 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.004565 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.383720 B = 6131.483201 C = 7401.730070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.148 3.852 3 N -0.288 5.288 4 N -0.314 5.314 5 C 0.389 3.611 6 N -0.453 5.453 7 C 0.035 3.965 8 C 0.232 3.768 9 H 0.050 0.950 10 C -0.174 4.174 11 C -0.511 4.511 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.275 1.275 19 N -0.479 5.479 20 C 0.142 3.858 21 C -0.420 4.420 22 S 1.255 4.745 23 C -0.495 4.495 24 O -0.841 6.841 25 C -0.102 4.102 26 C -0.137 4.137 27 C -0.103 4.103 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.096 0.904 33 H 0.034 0.966 34 H 0.041 0.959 35 H 0.021 0.979 36 H 0.089 0.911 37 H 0.262 0.738 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.095 0.905 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.659 -7.764 -2.322 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 N -0.128 5.128 4 N -0.158 5.158 5 C 0.034 3.966 6 N -0.177 5.177 7 C -0.112 4.112 8 C 0.128 3.872 9 H 0.068 0.932 10 C -0.233 4.233 11 C -0.550 4.550 12 H 0.081 0.919 13 C -0.138 4.138 14 N -0.523 5.523 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.200 1.200 19 N -0.176 5.176 20 C 0.017 3.983 21 C -0.518 4.518 22 S 1.454 4.546 23 C -0.653 4.653 24 O -0.837 6.837 25 C -0.140 4.140 26 C -0.176 4.176 27 C -0.142 4.142 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.133 0.867 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.122 0.878 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.085 0.915 47 H 0.113 0.887 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.820 -7.375 -3.205 22.319 hybrid contribution 1.148 -1.007 2.544 2.967 sum -19.672 -8.382 -0.661 21.394 Atomic orbital electron populations 1.20186 0.84777 1.03629 1.03491 1.24439 0.96059 0.82848 1.08554 1.73981 0.97143 1.24185 1.17476 1.74927 1.10344 1.07354 1.23201 1.23076 0.84947 0.89331 0.99238 1.59382 1.00434 1.29232 1.28678 1.22366 1.02602 0.97639 0.88642 1.19337 0.83256 0.89691 0.94959 0.93202 1.22451 1.02673 1.00490 0.97716 1.21006 0.92944 0.93189 1.47875 0.91928 1.24874 0.98660 0.95018 0.95251 1.69922 1.25247 1.09540 1.47548 0.86503 0.81993 0.80369 0.78543 1.20633 1.21271 1.19964 1.46271 1.06244 1.07209 1.57863 1.21640 1.01615 0.79943 0.95113 1.29144 1.09179 1.14781 0.98716 1.70469 0.89639 0.81928 1.12588 1.27716 1.16475 1.08471 1.12589 1.93159 1.63383 1.47328 1.79792 1.22669 0.95357 0.97319 0.98705 1.23083 0.94490 0.97797 1.02217 1.22812 0.98208 0.95972 0.97165 0.90452 0.89012 0.90786 0.93901 0.88581 0.94731 0.94042 0.95961 0.89240 0.92814 0.89345 0.88262 0.86721 0.87699 0.89953 0.87759 0.89938 0.88909 0.91521 0.88700 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 9.27 36.00 0.33 -0.23 16 2 C 0.15 2.22 6.35 -154.01 -0.98 1.25 16 3 N -0.29 -5.63 12.18 32.99 0.40 -5.23 16 4 N -0.31 -6.98 9.17 30.31 0.28 -6.71 16 5 C 0.39 7.73 3.73 -318.87 -1.19 6.54 16 6 N -0.45 -9.61 3.18 -176.09 -0.56 -10.17 16 7 C 0.03 0.68 8.47 60.06 0.51 1.18 16 8 C 0.23 5.86 2.02 -68.86 -0.14 5.72 16 9 H 0.05 1.44 7.97 -51.93 -0.41 1.03 16 10 C -0.17 -4.43 8.18 37.16 0.30 -4.13 16 11 C -0.51 -13.68 7.86 -34.44 -0.27 -13.95 16 12 H 0.06 1.66 7.15 -52.49 -0.38 1.28 16 13 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 14 N -0.88 -25.25 11.32 55.43 0.63 -24.63 16 15 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 N -0.48 -7.41 1.62 -114.09 -0.18 -7.59 16 20 C 0.14 1.75 5.24 -4.04 -0.02 1.73 16 21 C -0.42 -4.46 1.35 -89.81 -0.12 -4.58 16 22 S 1.26 10.27 13.30 -107.50 -1.43 8.84 16 23 C -0.50 -2.85 10.04 101.05 1.01 -1.84 16 24 O -0.84 -12.76 18.14 -35.23 -0.64 -13.40 16 25 C -0.10 -1.43 6.91 -25.92 -0.18 -1.61 16 26 C -0.14 -1.96 7.36 -25.83 -0.19 -2.15 16 27 C -0.10 -0.95 6.84 -25.83 -0.18 -1.12 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.47 6.12 -51.93 -0.32 0.15 16 31 H 0.04 0.72 5.89 -51.93 -0.31 0.41 16 32 H 0.10 1.93 6.69 -51.92 -0.35 1.59 16 33 H 0.03 0.68 6.65 -51.93 -0.35 0.34 16 34 H 0.04 1.04 5.87 -51.93 -0.30 0.74 16 35 H 0.02 0.53 6.49 -51.93 -0.34 0.19 16 36 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.09 0.81 5.62 -51.93 -0.29 0.52 16 39 H 0.10 1.41 5.80 -51.93 -0.30 1.11 16 40 H 0.11 0.34 8.14 -51.92 -0.42 -0.08 16 41 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.08 0.57 6.69 -51.92 -0.35 0.22 16 43 H 0.10 1.88 6.46 -51.93 -0.34 1.54 16 44 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 45 H 0.09 1.69 3.66 -51.93 -0.19 1.50 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 48 H 0.08 0.68 4.15 -51.93 -0.22 0.47 16 LS Contribution 365.18 15.07 5.50 5.50 Total: -1.00 -36.39 365.18 -9.06 -45.45 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.83 Total: 3.27 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.20 Total: -11.51 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.56 Total: -54.33 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.64 Total: -13.40 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 10.27 SS G_CDS: -1.43 Total: 8.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.39 -9.06 -45.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395840417.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.874 kcal (2) G-P(sol) polarization free energy of solvation -36.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds