Wall clock time and date at job start Sat Apr 11 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30297 * 126.35033 * 2 1 4 4 N 1.28529 * 110.05225 * 180.31094 * 3 2 1 5 5 C 1.31221 * 109.86237 * 359.71348 * 4 3 2 6 6 N 1.38576 * 126.47415 * 180.02562 * 5 4 3 7 7 C 1.46894 * 110.99896 * 109.89947 * 6 5 4 8 8 C 1.46904 * 110.99694 * 345.94646 * 6 5 4 9 9 H 1.08996 * 109.47294 * 309.99976 * 8 6 5 10 10 C 1.52998 * 109.47029 * 70.00390 * 8 6 5 11 11 C 1.50702 * 109.46725 * 189.99930 * 8 6 5 12 12 H 1.08000 * 120.00322 * 0.02562 * 11 8 6 13 13 C 1.37879 * 120.00074 * 179.97438 * 11 8 6 14 14 N 1.31520 * 119.99806 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 120.00530 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47268 * 89.99886 * 15 13 11 17 17 H 1.48498 * 109.47501 * 210.00460 * 15 13 11 18 18 H 1.48507 * 109.46686 * 330.00486 * 15 13 11 19 19 N 1.36456 * 107.05228 * 0.02562 * 5 4 3 20 20 C 1.46496 * 127.13489 * 179.97438 * 19 5 4 21 21 C 1.53000 * 109.47197 * 271.06629 * 20 19 5 22 22 S 1.81394 * 112.90900 * 190.96767 * 21 20 19 23 23 C 1.81398 * 103.00201 * 46.56974 * 22 21 20 24 24 O 1.42101 * 109.47007 * 290.18346 * 22 21 20 25 25 C 1.53779 * 113.61332 * 59.71676 * 21 20 19 26 26 C 1.53786 * 87.17397 * 270.83903 * 25 21 20 27 27 C 1.53785 * 113.61494 * 322.22129 * 21 20 19 28 28 H 1.09007 * 109.47461 * 275.62362 * 1 2 3 29 29 H 1.09002 * 109.47075 * 35.61453 * 1 2 3 30 30 H 1.08996 * 109.47657 * 155.61452 * 1 2 3 31 31 H 1.08995 * 109.47228 * 63.18158 * 7 6 5 32 32 H 1.09007 * 109.47140 * 183.17573 * 7 6 5 33 33 H 1.08997 * 109.47428 * 303.17513 * 7 6 5 34 34 H 1.09003 * 109.46813 * 299.99467 * 10 8 6 35 35 H 1.08996 * 109.47421 * 59.99664 * 10 8 6 36 36 H 1.09004 * 109.47153 * 180.02562 * 10 8 6 37 37 H 0.96998 * 119.99955 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.46756 * 151.06780 * 20 19 5 39 39 H 1.08998 * 109.47371 * 31.06963 * 20 19 5 40 40 H 1.09003 * 109.47175 * 62.86348 * 23 22 21 41 41 H 1.09004 * 109.47555 * 182.86610 * 23 22 21 42 42 H 1.08999 * 109.46922 * 302.86726 * 23 22 21 43 43 H 1.08999 * 113.61741 * 25.42801 * 25 21 20 44 44 H 1.09004 * 113.61414 * 156.25356 * 25 21 20 45 45 H 1.09006 * 113.60837 * 89.15570 * 26 25 21 46 46 H 1.08991 * 113.61635 * 220.05777 * 26 25 21 47 47 H 1.09002 * 113.60898 * 203.66339 * 27 21 20 48 48 H 1.08994 * 113.61510 * 334.47873 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6887 -0.0066 5 6 3.5945 -0.6209 -0.0050 6 7 4.7579 -1.3738 -0.0100 7 6 4.9531 -2.0497 1.2795 8 6 5.9208 -0.5434 -0.3505 9 1 5.7073 0.0281 -1.2538 10 6 6.2167 0.4174 0.8029 11 6 7.1177 -1.4281 -0.5870 12 1 7.0238 -2.4999 -0.4940 13 6 8.3325 -0.8691 -0.9230 14 7 8.4468 0.4362 -1.0367 15 14 9.8160 -1.9656 -1.2168 16 1 9.8748 -2.3450 -2.6513 17 1 11.0539 -1.2332 -0.8474 18 1 9.6986 -3.1904 -0.3852 19 7 2.3173 -1.1014 0.0026 20 6 1.9008 -2.5059 0.0065 21 6 1.7737 -3.0042 -1.4345 22 16 0.9638 -4.6229 -1.5531 23 6 -0.4796 -4.4374 -0.4701 24 8 1.8252 -5.6232 -1.0269 25 6 3.0823 -2.9099 -2.2366 26 6 2.6467 -1.4898 -2.6351 27 6 1.1980 -1.9551 -2.4005 28 1 -0.3634 0.1007 1.0228 29 1 -0.3633 0.8355 -0.5984 30 1 -0.3634 -0.9359 -0.4243 31 1 4.1379 -2.7534 1.4480 32 1 5.9010 -2.5879 1.2679 33 1 4.9653 -1.3095 2.0796 34 1 5.3510 1.0572 0.9739 35 1 6.4302 -0.1541 1.7061 36 1 7.0793 1.0339 0.5500 37 1 9.3015 0.8295 -1.2727 38 1 0.9380 -2.5979 0.5091 39 1 2.6443 -3.1039 0.5334 40 1 -1.1338 -3.6609 -0.8665 41 1 -1.0228 -5.3814 -0.4236 42 1 -0.1495 -4.1585 0.5306 43 1 3.9778 -2.9338 -1.6157 44 1 3.1307 -3.6034 -3.0762 45 1 2.9764 -0.7201 -1.9372 46 1 2.8639 -1.2418 -3.6739 47 1 0.7308 -2.3867 -3.2857 48 1 0.5711 -1.2092 -1.9120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001395840417.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:50 Heat of formation + Delta-G solvation = 85.470536 kcal Electronic energy + Delta-G solvation = -30354.451394 eV Core-core repulsion = 26574.407943 eV Total energy + Delta-G solvation = -3780.043450 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -44.23409 -39.95218 -39.10709 -36.82388 -35.34533 -34.86667 -32.73243 -30.86155 -30.46565 -29.31004 -28.51081 -27.35006 -26.74777 -26.34410 -25.00460 -23.40438 -21.91199 -21.26650 -20.07532 -18.72994 -18.39497 -17.88129 -17.61680 -17.32146 -16.80180 -16.29048 -15.95855 -15.64670 -15.40948 -15.19234 -14.99831 -14.85641 -14.68278 -14.34853 -14.21529 -13.79839 -13.56665 -13.39530 -13.32071 -13.19300 -13.17456 -13.01670 -12.96210 -12.80855 -12.70748 -12.39083 -12.28955 -12.24715 -12.14235 -12.02790 -11.88760 -11.37184 -11.15244 -10.95812 -10.79301 -10.64858 -10.53438 -10.37202 -9.25128 -9.00868 -8.15540 -6.30034 0.61203 0.88089 1.31884 1.40143 1.40762 1.51199 1.77880 1.95550 2.38134 2.74981 3.01265 3.13703 3.25076 3.41858 3.53616 3.63216 3.88121 3.92750 4.02915 4.13319 4.14189 4.35720 4.37188 4.42208 4.55184 4.59054 4.63127 4.73698 4.80584 4.83770 4.86438 4.89479 5.00851 5.07937 5.11702 5.14250 5.18661 5.24368 5.26839 5.30739 5.44897 5.52981 5.58010 5.63412 5.86760 6.08564 6.18927 6.60992 6.78895 7.38580 7.93371 8.90779 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.004565 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.383720 B = 6131.483201 C = 7401.730070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.180 3.820 3 N -0.338 5.338 4 N -0.365 5.365 5 C 0.374 3.626 6 N -0.452 5.452 7 C 0.040 3.960 8 C 0.249 3.751 9 H 0.002 0.998 10 C -0.156 4.156 11 C -0.522 4.522 12 H 0.062 0.938 13 C 0.016 3.984 14 N -0.917 5.917 15 Si 0.965 3.035 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.267 1.267 19 N -0.468 5.468 20 C 0.129 3.871 21 C -0.414 4.414 22 S 1.314 4.686 23 C -0.490 4.490 24 O -0.915 6.915 25 C -0.115 4.115 26 C -0.159 4.159 27 C -0.076 4.076 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.025 0.975 34 H 0.038 0.962 35 H 0.026 0.974 36 H 0.061 0.939 37 H 0.263 0.737 38 H 0.134 0.866 39 H 0.075 0.925 40 H 0.159 0.841 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.100 0.900 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.145 0.855 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.043 -9.912 -2.542 27.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.088 4.088 3 N -0.177 5.177 4 N -0.209 5.209 5 C 0.017 3.983 6 N -0.175 5.175 7 C -0.107 4.107 8 C 0.143 3.857 9 H 0.020 0.980 10 C -0.215 4.215 11 C -0.560 4.560 12 H 0.080 0.920 13 C -0.184 4.184 14 N -0.556 5.556 15 Si 0.790 3.210 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.191 1.191 19 N -0.164 5.164 20 C 0.006 3.994 21 C -0.510 4.510 22 S 1.514 4.486 23 C -0.650 4.650 24 O -0.911 6.911 25 C -0.153 4.153 26 C -0.199 4.199 27 C -0.114 4.114 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.152 0.848 39 H 0.094 0.906 40 H 0.178 0.822 41 H 0.135 0.865 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.163 0.837 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.206 -9.526 -3.430 27.164 hybrid contribution 2.311 -0.338 2.622 3.511 sum -22.895 -9.864 -0.809 24.943 Atomic orbital electron populations 1.20622 0.79773 1.06483 1.05608 1.25632 0.98180 0.81353 1.03674 1.73868 0.96729 1.26360 1.20773 1.74739 1.12478 1.09021 1.24626 1.22749 0.85908 0.89029 1.00633 1.59181 0.99949 1.28718 1.29652 1.22344 1.03150 0.97616 0.87629 1.18816 0.84648 0.89399 0.92788 0.98049 1.22232 1.01187 1.00101 0.97978 1.21244 0.93737 0.93249 1.47766 0.92022 1.25707 1.01511 0.96252 0.94884 1.70073 1.25905 1.11262 1.48313 0.85460 0.78340 0.78704 0.78524 1.20164 1.20821 1.19094 1.46368 1.04488 1.08701 1.56826 1.22058 1.02888 0.77660 0.96823 1.29146 1.07548 1.16959 0.97378 1.69662 0.88238 0.78340 1.12368 1.27684 1.14813 1.10911 1.11587 1.93044 1.66013 1.50259 1.81756 1.22646 0.95417 0.97847 0.99420 1.23102 0.99194 0.96863 1.00693 1.22867 0.94939 0.95103 0.98490 0.88281 0.87698 0.86657 0.91095 0.89788 0.95603 0.94314 0.95468 0.92037 0.92799 0.84834 0.90635 0.82246 0.86493 0.90417 0.92602 0.88179 0.92962 0.92244 0.83703 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 9.27 71.23 0.66 -0.20 16 2 C 0.18 5.07 6.35 137.64 0.87 5.95 16 3 N -0.34 -13.49 12.18 -49.54 -0.60 -14.10 16 4 N -0.37 -17.19 9.17 -58.00 -0.53 -17.73 16 5 C 0.37 15.56 3.73 260.11 0.97 16.53 16 6 N -0.45 -20.42 3.18 -711.01 -2.26 -22.69 16 7 C 0.04 1.62 8.47 127.69 1.08 2.70 16 8 C 0.25 13.59 2.02 44.17 0.09 13.68 16 9 H 0.00 0.10 7.97 -2.39 -0.02 0.08 16 10 C -0.16 -8.50 8.18 71.98 0.59 -7.91 16 11 C -0.52 -29.44 7.86 25.60 0.20 -29.24 16 12 H 0.06 3.42 7.15 -2.91 -0.02 3.40 16 13 C 0.02 0.90 5.30 84.65 0.45 1.35 16 14 N -0.92 -55.02 11.32 21.45 0.24 -54.78 16 15 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 N -0.47 -14.08 1.62 -514.86 -0.83 -14.91 16 20 C 0.13 2.86 5.24 86.38 0.45 3.31 16 21 C -0.41 -7.63 1.35 -10.27 -0.01 -7.64 16 22 S 1.31 16.46 13.30 -56.49 -0.75 15.71 16 23 C -0.49 -2.48 10.04 113.37 1.14 -1.34 16 24 O -0.92 -26.34 18.14 -148.98 -2.70 -29.04 16 25 C -0.11 -3.23 6.91 31.12 0.22 -3.02 16 26 C -0.16 -4.56 7.36 31.18 0.23 -4.33 16 27 C -0.08 -1.08 6.84 31.18 0.21 -0.87 16 28 H 0.10 1.01 8.14 -2.38 -0.02 1.00 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.12 0.57 6.12 -2.39 -0.01 0.55 16 31 H 0.07 2.43 5.89 -2.39 -0.01 2.42 16 32 H 0.08 3.56 6.69 -2.38 -0.02 3.54 16 33 H 0.03 1.06 6.65 -2.39 -0.02 1.05 16 34 H 0.04 2.10 5.87 -2.39 -0.01 2.09 16 35 H 0.03 1.39 6.49 -2.39 -0.02 1.37 16 36 H 0.06 3.68 6.07 -2.38 -0.01 3.67 16 37 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.13 1.74 5.62 -2.39 -0.01 1.72 16 39 H 0.08 2.08 5.80 -2.39 -0.01 2.07 16 40 H 0.16 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.08 0.59 6.69 -2.39 -0.02 0.58 16 43 H 0.06 2.13 6.46 -2.39 -0.02 2.12 16 44 H 0.10 2.35 8.10 -2.39 -0.02 2.33 16 45 H 0.05 1.98 3.66 -2.38 -0.01 1.97 16 46 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.15 0.67 8.10 -2.39 -0.02 0.65 16 48 H 0.09 1.08 4.15 -2.39 -0.01 1.07 16 Total: -1.00 -91.01 365.18 2.73 -88.29 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.99 Total: 13.46 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 7.15 Total: -11.03 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -3.99 Total: -124.20 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -2.70 Total: -29.04 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 16.46 SS G_CDS: -0.75 Total: 15.71 kcal Total: -91.01 2.73 -88.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395840417.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.756 kcal (2) G-P(sol) polarization free energy of solvation -91.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds