Wall clock time and date at job start Sat Apr 11 2020 06:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30291 * 126.34941 * 2 1 4 4 N 1.28524 * 110.05398 * 180.31229 * 3 2 1 5 5 C 1.31227 * 109.85832 * 359.71294 * 4 3 2 6 6 N 1.38584 * 126.47044 * 180.02562 * 5 4 3 7 7 C 1.46899 * 110.99724 * 109.38319 * 6 5 4 8 8 C 1.46896 * 110.99979 * 345.43109 * 6 5 4 9 9 H 1.09001 * 109.47164 * 311.81432 * 8 6 5 10 10 C 1.52999 * 109.47407 * 71.81618 * 8 6 5 11 11 C 1.50710 * 109.46890 * 191.81376 * 8 6 5 12 12 H 1.07994 * 119.99524 * 0.02562 * 11 8 6 13 13 C 1.37873 * 119.99864 * 180.02562 * 11 8 6 14 14 N 1.31510 * 120.00140 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00020 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47272 * 89.99442 * 15 13 11 17 17 H 1.48492 * 109.47415 * 209.99764 * 15 13 11 18 18 H 1.48502 * 109.46817 * 329.99725 * 15 13 11 19 19 N 1.36448 * 107.05273 * 0.02562 * 5 4 3 20 20 C 1.46497 * 127.13601 * 179.97438 * 19 5 4 21 21 C 1.53009 * 109.47060 * 274.63955 * 20 19 5 22 22 S 1.81399 * 112.85070 * 176.23216 * 21 20 19 23 23 C 1.81402 * 102.99948 * 54.27444 * 22 21 20 24 24 O 1.42096 * 109.47173 * 170.66411 * 22 21 20 25 25 C 1.53778 * 113.68817 * 307.49666 * 21 20 19 26 26 C 1.53785 * 87.08202 * 89.12965 * 25 21 20 27 27 C 1.53779 * 87.08011 * 25.42927 * 26 25 21 28 28 H 1.09001 * 109.47677 * 275.88938 * 1 2 3 29 29 H 1.09003 * 109.47028 * 35.88299 * 1 2 3 30 30 H 1.08995 * 109.47377 * 155.88187 * 1 2 3 31 31 H 1.09003 * 109.47393 * 66.35835 * 7 6 5 32 32 H 1.09001 * 109.47395 * 186.35691 * 7 6 5 33 33 H 1.09003 * 109.47643 * 306.35800 * 7 6 5 34 34 H 1.08998 * 109.46919 * 306.32577 * 10 8 6 35 35 H 1.09004 * 109.47187 * 66.32092 * 10 8 6 36 36 H 1.08992 * 109.47090 * 186.32247 * 10 8 6 37 37 H 0.96999 * 119.99955 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.47304 * 154.63892 * 20 19 5 39 39 H 1.08997 * 109.47530 * 34.63200 * 20 19 5 40 40 H 1.08998 * 109.46923 * 174.80637 * 23 22 21 41 41 H 1.08993 * 109.47054 * 54.80637 * 23 22 21 42 42 H 1.08999 * 109.47336 * 294.80281 * 23 22 21 43 43 H 1.08995 * 113.61525 * 203.67677 * 25 21 20 44 44 H 1.09002 * 113.61659 * 334.58247 * 25 21 20 45 45 H 1.09000 * 113.61108 * 270.88506 * 26 25 21 46 46 H 1.08993 * 113.61667 * 139.98078 * 26 25 21 47 47 H 1.08997 * 113.61782 * 220.02281 * 27 26 25 48 48 H 1.09006 * 113.68913 * 89.12539 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5128 0.6888 -0.0066 5 6 3.5944 -0.6210 -0.0050 6 7 4.7579 -1.3738 -0.0100 7 6 4.9594 -2.0399 1.2836 8 6 5.9191 -0.5460 -0.3625 9 1 5.6894 0.0427 -1.2506 10 6 6.2484 0.3922 0.8003 11 6 7.1036 -1.4351 -0.6416 12 1 7.0035 -2.5076 -0.5652 13 6 8.3149 -0.8790 -0.9945 14 7 8.4365 0.4271 -1.0880 15 14 9.7829 -1.9809 -1.3411 16 1 9.8068 -2.3346 -2.7832 17 1 11.0343 -1.2646 -0.9863 18 1 9.6745 -3.2197 -0.5293 19 7 2.3173 -1.1014 0.0026 20 6 1.9008 -2.5059 0.0065 21 6 1.8597 -3.0297 -1.4306 22 16 1.4586 -4.7962 -1.5253 23 6 -0.0941 -4.9126 -0.5946 24 8 1.2271 -5.1574 -2.8799 25 6 1.0254 -2.1567 -2.3827 26 6 2.3126 -1.3599 -2.6537 27 6 3.0871 -2.6309 -2.2669 28 1 -0.3634 0.1054 1.0222 29 1 -0.3633 0.8327 -0.6024 30 1 -0.3634 -0.9379 -0.4199 31 1 4.1763 -2.7827 1.4359 32 1 5.9325 -2.5311 1.2918 33 1 4.9191 -1.3004 2.0834 34 1 5.3572 0.9561 1.0758 35 1 6.5864 -0.1935 1.6552 36 1 7.0362 1.0823 0.4984 37 1 9.2888 0.8183 -1.3359 38 1 0.9096 -2.5897 0.4522 39 1 2.6113 -3.0941 0.5872 40 1 -0.4831 -5.9285 -0.6625 41 1 -0.8212 -4.2164 -1.0125 42 1 0.0891 -4.6628 0.4505 43 1 0.6531 -2.6944 -3.2547 44 1 0.2514 -1.5777 -1.8789 45 1 2.4649 -0.5292 -1.9647 46 1 2.4371 -1.0735 -3.6979 47 1 3.9774 -2.4348 -1.6695 48 1 3.2792 -3.2992 -3.1063 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001395840422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:55 Heat of formation + Delta-G solvation = 110.088321 kcal Electronic energy + Delta-G solvation = -30282.362292 eV Core-core repulsion = 26503.386349 eV Total energy + Delta-G solvation = -3778.975943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.92529 -38.94543 -37.38052 -35.92945 -34.02157 -32.92885 -31.50693 -29.71872 -28.77975 -28.42251 -27.37642 -25.76776 -25.23529 -24.89688 -23.96591 -21.69751 -20.76743 -19.60513 -18.95151 -17.86182 -17.08639 -16.53601 -16.20069 -15.74642 -15.44850 -15.07699 -14.69279 -14.52061 -14.26505 -14.07743 -13.67848 -13.57474 -13.43538 -13.32157 -12.92030 -12.80036 -12.71534 -12.39213 -12.25416 -12.00486 -11.75064 -11.59003 -11.54746 -11.31616 -11.16054 -10.91665 -10.85968 -10.73477 -10.50090 -10.29962 -10.16031 -10.06943 -9.94096 -9.78510 -9.55280 -8.91509 -8.85043 -8.41388 -8.35310 -7.45860 -6.03962 -4.10755 1.26775 2.11713 2.33189 2.72841 3.29551 3.35985 3.36756 3.37567 3.56678 4.05472 4.31510 4.42646 4.52395 4.56529 4.64414 4.76665 4.82904 4.93243 4.96057 4.99794 5.09207 5.28400 5.37062 5.40511 5.50277 5.60193 5.61259 5.73093 5.79013 5.87899 5.99759 6.09549 6.16515 6.24343 6.30894 6.45305 6.47082 6.65462 6.80030 6.98321 7.07258 7.18581 7.45547 7.61224 7.75235 7.96748 8.24911 8.42895 8.91376 9.32167 9.54148 11.02727 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.004634 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.743476 B = 6040.353010 C = 7405.647791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.151 3.849 3 N -0.289 5.289 4 N -0.313 5.313 5 C 0.387 3.613 6 N -0.453 5.453 7 C 0.033 3.967 8 C 0.230 3.770 9 H 0.049 0.951 10 C -0.167 4.167 11 C -0.512 4.512 12 H 0.065 0.935 13 C 0.065 3.935 14 N -0.884 5.884 15 Si 0.898 3.102 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.274 1.274 19 N -0.478 5.478 20 C 0.159 3.841 21 C -0.422 4.422 22 S 1.263 4.737 23 C -0.494 4.494 24 O -0.840 6.840 25 C -0.127 4.127 26 C -0.136 4.136 27 C -0.112 4.112 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.032 0.968 34 H 0.035 0.965 35 H 0.025 0.975 36 H 0.085 0.915 37 H 0.262 0.738 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.059 0.941 47 H 0.127 0.873 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.341 -10.534 5.978 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.117 4.117 3 N -0.129 5.129 4 N -0.157 5.157 5 C 0.031 3.969 6 N -0.178 5.178 7 C -0.115 4.115 8 C 0.126 3.874 9 H 0.067 0.933 10 C -0.226 4.226 11 C -0.551 4.551 12 H 0.083 0.917 13 C -0.138 4.138 14 N -0.522 5.522 15 Si 0.726 3.274 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.198 1.198 19 N -0.175 5.175 20 C 0.034 3.966 21 C -0.520 4.520 22 S 1.461 4.539 23 C -0.651 4.651 24 O -0.835 6.835 25 C -0.165 4.165 26 C -0.175 4.175 27 C -0.150 4.150 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.145 0.855 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.305 -10.055 5.120 19.015 hybrid contribution -1.146 -0.086 -0.719 1.355 sum -16.451 -10.141 4.402 19.821 Atomic orbital electron populations 1.20184 0.84935 1.03509 1.03491 1.24401 0.96018 0.82925 1.08311 1.73999 0.97164 1.24203 1.17497 1.74908 1.10335 1.07552 1.22898 1.23121 0.84886 0.89324 0.99524 1.59392 1.00428 1.29610 1.28324 1.22393 1.03110 0.97618 0.88337 1.19365 0.83337 0.89896 0.94833 0.93275 1.22381 1.01376 1.00803 0.98083 1.20990 0.93495 0.93126 1.47509 0.91681 1.24883 0.98670 0.94997 0.95275 1.69933 1.25327 1.09628 1.47322 0.86506 0.81901 0.80397 0.78601 1.20717 1.21365 1.19841 1.46238 1.06202 1.07343 1.57757 1.21217 1.01993 0.79510 0.93895 1.29094 1.06595 1.17164 0.99172 1.70543 0.99223 0.89070 0.95053 1.27666 1.18511 1.07505 1.11460 1.93124 1.83090 1.73625 1.33695 1.22981 0.97271 0.98223 0.98057 1.23002 0.94759 0.97929 1.01775 1.22898 0.96837 0.96626 0.98662 0.90218 0.89260 0.91033 0.93272 0.88436 0.94901 0.94566 0.95637 0.89643 0.92822 0.88885 0.87178 0.87784 0.89903 0.86894 0.89863 0.91041 0.89103 0.92173 0.85528 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 9.61 36.01 0.35 -0.26 16 2 C 0.15 2.23 6.03 -154.02 -0.93 1.30 16 3 N -0.29 -5.58 12.06 32.99 0.40 -5.18 16 4 N -0.31 -6.74 9.30 30.32 0.28 -6.46 16 5 C 0.39 7.15 4.17 -318.86 -1.33 5.82 16 6 N -0.45 -8.64 2.61 -176.07 -0.46 -9.10 16 7 C 0.03 0.52 8.38 60.06 0.50 1.03 16 8 C 0.23 5.49 2.01 -68.86 -0.14 5.35 16 9 H 0.05 1.38 7.91 -51.93 -0.41 0.97 16 10 C -0.17 -4.03 7.88 37.16 0.29 -3.74 16 11 C -0.51 -12.90 7.83 -34.44 -0.27 -13.17 16 12 H 0.07 1.57 7.31 -52.49 -0.38 1.19 16 13 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 14 N -0.88 -24.63 11.39 55.43 0.63 -24.00 16 15 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 N -0.48 -6.80 1.62 -114.08 -0.18 -6.98 16 20 C 0.16 1.53 5.17 -4.04 -0.02 1.51 16 21 C -0.42 -4.57 1.29 -89.80 -0.12 -4.68 16 22 S 1.26 10.89 13.35 -107.50 -1.43 9.45 16 23 C -0.49 -2.92 10.11 101.05 1.02 -1.89 16 24 O -0.84 -12.65 17.53 -35.23 -0.62 -13.26 16 25 C -0.13 -1.59 6.86 -25.92 -0.18 -1.77 16 26 C -0.14 -2.16 7.29 -25.92 -0.19 -2.35 16 27 C -0.11 -1.66 6.82 -25.92 -0.18 -1.84 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.55 5.35 -51.93 -0.28 0.28 16 31 H 0.05 0.58 5.96 -51.93 -0.31 0.27 16 32 H 0.10 1.63 6.78 -51.93 -0.35 1.28 16 33 H 0.03 0.55 6.96 -51.93 -0.36 0.19 16 34 H 0.04 0.86 5.95 -51.93 -0.31 0.55 16 35 H 0.02 0.57 6.94 -51.93 -0.36 0.21 16 36 H 0.08 2.30 6.27 -51.93 -0.33 1.98 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 38 H 0.09 0.59 6.64 -51.93 -0.34 0.24 16 39 H 0.11 0.86 5.88 -51.93 -0.31 0.56 16 40 H 0.10 0.58 8.14 -51.92 -0.42 0.15 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.11 0.34 7.59 -51.92 -0.39 -0.05 16 43 H 0.08 1.13 7.60 -51.93 -0.39 0.74 16 44 H 0.07 0.78 4.92 -51.93 -0.26 0.53 16 45 H 0.09 1.63 3.60 -51.93 -0.19 1.45 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.13 2.15 5.10 -51.93 -0.27 1.89 16 48 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -35.27 365.37 -9.09 -44.35 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.91 Total: 3.45 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.28 Total: -13.09 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.67 Total: -51.73 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.62 Total: -13.26 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 10.89 SS G_CDS: -1.43 Total: 9.45 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.27 -9.09 -44.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395840422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.442 kcal (2) G-P(sol) polarization free energy of solvation -35.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds