Wall clock time and date at job start Sat Apr 11 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30291 * 126.34941 * 2 1 4 4 N 1.28524 * 110.05398 * 180.31229 * 3 2 1 5 5 C 1.31227 * 109.85832 * 359.71294 * 4 3 2 6 6 N 1.38584 * 126.47044 * 180.02562 * 5 4 3 7 7 C 1.46899 * 110.99724 * 109.38319 * 6 5 4 8 8 C 1.46896 * 110.99979 * 345.43109 * 6 5 4 9 9 H 1.09001 * 109.47164 * 311.81432 * 8 6 5 10 10 C 1.52999 * 109.47407 * 71.81618 * 8 6 5 11 11 C 1.50710 * 109.46890 * 191.81376 * 8 6 5 12 12 H 1.07994 * 119.99524 * 0.02562 * 11 8 6 13 13 C 1.37873 * 119.99864 * 180.02562 * 11 8 6 14 14 N 1.31510 * 120.00140 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00020 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47272 * 89.99442 * 15 13 11 17 17 H 1.48492 * 109.47415 * 209.99764 * 15 13 11 18 18 H 1.48502 * 109.46817 * 329.99725 * 15 13 11 19 19 N 1.36448 * 107.05273 * 0.02562 * 5 4 3 20 20 C 1.46497 * 127.13601 * 179.97438 * 19 5 4 21 21 C 1.53009 * 109.47060 * 274.63955 * 20 19 5 22 22 S 1.81399 * 112.85070 * 176.23216 * 21 20 19 23 23 C 1.81402 * 102.99948 * 54.27444 * 22 21 20 24 24 O 1.42096 * 109.47173 * 170.66411 * 22 21 20 25 25 C 1.53778 * 113.68817 * 307.49666 * 21 20 19 26 26 C 1.53785 * 87.08202 * 89.12965 * 25 21 20 27 27 C 1.53779 * 87.08011 * 25.42927 * 26 25 21 28 28 H 1.09001 * 109.47677 * 275.88938 * 1 2 3 29 29 H 1.09003 * 109.47028 * 35.88299 * 1 2 3 30 30 H 1.08995 * 109.47377 * 155.88187 * 1 2 3 31 31 H 1.09003 * 109.47393 * 66.35835 * 7 6 5 32 32 H 1.09001 * 109.47395 * 186.35691 * 7 6 5 33 33 H 1.09003 * 109.47643 * 306.35800 * 7 6 5 34 34 H 1.08998 * 109.46919 * 306.32577 * 10 8 6 35 35 H 1.09004 * 109.47187 * 66.32092 * 10 8 6 36 36 H 1.08992 * 109.47090 * 186.32247 * 10 8 6 37 37 H 0.96999 * 119.99955 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.47304 * 154.63892 * 20 19 5 39 39 H 1.08997 * 109.47530 * 34.63200 * 20 19 5 40 40 H 1.08998 * 109.46923 * 174.80637 * 23 22 21 41 41 H 1.08993 * 109.47054 * 54.80637 * 23 22 21 42 42 H 1.08999 * 109.47336 * 294.80281 * 23 22 21 43 43 H 1.08995 * 113.61525 * 203.67677 * 25 21 20 44 44 H 1.09002 * 113.61659 * 334.58247 * 25 21 20 45 45 H 1.09000 * 113.61108 * 270.88506 * 26 25 21 46 46 H 1.08993 * 113.61667 * 139.98078 * 26 25 21 47 47 H 1.08997 * 113.61782 * 220.02281 * 27 26 25 48 48 H 1.09006 * 113.68913 * 89.12539 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0494 0.0000 4 7 3.5128 0.6888 -0.0066 5 6 3.5944 -0.6210 -0.0050 6 7 4.7579 -1.3738 -0.0100 7 6 4.9594 -2.0399 1.2836 8 6 5.9191 -0.5460 -0.3625 9 1 5.6894 0.0427 -1.2506 10 6 6.2484 0.3922 0.8003 11 6 7.1036 -1.4351 -0.6416 12 1 7.0035 -2.5076 -0.5652 13 6 8.3149 -0.8790 -0.9945 14 7 8.4365 0.4271 -1.0880 15 14 9.7829 -1.9809 -1.3411 16 1 9.8068 -2.3346 -2.7832 17 1 11.0343 -1.2646 -0.9863 18 1 9.6745 -3.2197 -0.5293 19 7 2.3173 -1.1014 0.0026 20 6 1.9008 -2.5059 0.0065 21 6 1.8597 -3.0297 -1.4306 22 16 1.4586 -4.7962 -1.5253 23 6 -0.0941 -4.9126 -0.5946 24 8 1.2271 -5.1574 -2.8799 25 6 1.0254 -2.1567 -2.3827 26 6 2.3126 -1.3599 -2.6537 27 6 3.0871 -2.6309 -2.2669 28 1 -0.3634 0.1054 1.0222 29 1 -0.3633 0.8327 -0.6024 30 1 -0.3634 -0.9379 -0.4199 31 1 4.1763 -2.7827 1.4359 32 1 5.9325 -2.5311 1.2918 33 1 4.9191 -1.3004 2.0834 34 1 5.3572 0.9561 1.0758 35 1 6.5864 -0.1935 1.6552 36 1 7.0362 1.0823 0.4984 37 1 9.2888 0.8183 -1.3359 38 1 0.9096 -2.5897 0.4522 39 1 2.6113 -3.0941 0.5872 40 1 -0.4831 -5.9285 -0.6625 41 1 -0.8212 -4.2164 -1.0125 42 1 0.0891 -4.6628 0.4505 43 1 0.6531 -2.6944 -3.2547 44 1 0.2514 -1.5777 -1.8789 45 1 2.4649 -0.5292 -1.9647 46 1 2.4371 -1.0735 -3.6979 47 1 3.9774 -2.4348 -1.6695 48 1 3.2792 -3.2992 -3.1063 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001395840422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:54 Heat of formation + Delta-G solvation = 85.957315 kcal Electronic energy + Delta-G solvation = -30283.408691 eV Core-core repulsion = 26503.386349 eV Total energy + Delta-G solvation = -3780.022342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.17809 -40.04480 -38.97293 -36.89028 -35.24164 -34.74281 -32.68918 -30.70741 -30.30095 -29.27129 -28.50589 -27.25510 -26.84311 -26.28155 -25.05308 -23.27715 -21.93865 -21.11869 -20.08916 -18.79415 -18.32380 -17.87229 -17.58180 -17.21045 -16.77345 -16.28594 -15.86634 -15.64938 -15.39811 -15.11343 -14.91082 -14.69977 -14.52740 -14.28900 -14.18647 -13.80254 -13.57416 -13.48502 -13.27873 -13.20524 -13.00240 -12.96573 -12.84238 -12.71731 -12.63614 -12.53220 -12.27590 -12.22512 -12.06004 -12.01138 -11.86374 -11.35894 -11.21789 -10.91685 -10.82412 -10.67437 -10.45338 -10.23849 -9.14210 -8.93701 -8.05852 -6.19173 0.52255 0.97738 1.43875 1.49103 1.50957 1.59953 1.77371 2.03345 2.47301 2.81329 3.12413 3.16052 3.25337 3.46726 3.55031 3.65538 3.80272 3.92875 4.11746 4.18721 4.26974 4.33429 4.41551 4.52411 4.57944 4.61469 4.67485 4.70738 4.73498 4.80106 4.85739 4.96880 5.03426 5.12055 5.14908 5.17403 5.20484 5.23992 5.24966 5.27386 5.40753 5.56581 5.68876 5.74597 5.99041 6.19933 6.28703 6.71388 6.92162 7.49852 8.00689 9.00982 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.004634 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.743476 B = 6040.353010 C = 7405.647791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.176 3.824 3 N -0.343 5.343 4 N -0.372 5.372 5 C 0.377 3.623 6 N -0.448 5.448 7 C 0.029 3.971 8 C 0.245 3.755 9 H -0.008 1.008 10 C -0.148 4.148 11 C -0.513 4.513 12 H 0.078 0.922 13 C 0.010 3.990 14 N -0.923 5.923 15 Si 0.963 3.037 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.253 1.253 19 N -0.466 5.466 20 C 0.141 3.859 21 C -0.403 4.403 22 S 1.310 4.690 23 C -0.486 4.486 24 O -0.908 6.908 25 C -0.115 4.115 26 C -0.155 4.155 27 C -0.120 4.120 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.021 0.979 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.050 0.950 37 H 0.259 0.741 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.157 0.843 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.106 0.894 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.388 -14.151 8.518 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.093 4.093 3 N -0.182 5.182 4 N -0.215 5.215 5 C 0.020 3.980 6 N -0.171 5.171 7 C -0.117 4.117 8 C 0.139 3.861 9 H 0.010 0.990 10 C -0.207 4.207 11 C -0.552 4.552 12 H 0.096 0.904 13 C -0.188 4.188 14 N -0.563 5.563 15 Si 0.789 3.211 16 H -0.210 1.210 17 H -0.218 1.218 18 H -0.177 1.177 19 N -0.163 5.163 20 C 0.019 3.981 21 C -0.499 4.499 22 S 1.509 4.491 23 C -0.646 4.646 24 O -0.903 6.903 25 C -0.153 4.153 26 C -0.193 4.193 27 C -0.158 4.158 28 H 0.127 0.873 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.040 0.960 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.132 0.868 41 H 0.101 0.899 42 H 0.175 0.825 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.090 0.910 46 H 0.053 0.947 47 H 0.124 0.876 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.359 -13.686 7.657 24.145 hybrid contribution -0.387 1.025 -1.508 1.864 sum -18.747 -12.661 6.149 23.442 Atomic orbital electron populations 1.20505 0.80816 1.05215 1.05720 1.25382 0.97823 0.82001 1.04062 1.73878 0.97001 1.26602 1.20698 1.74730 1.12178 1.09814 1.24767 1.22895 0.86051 0.88900 1.00168 1.59262 0.99193 1.28448 1.30210 1.22556 1.04823 0.98091 0.86240 1.18840 0.85107 0.89687 0.92478 0.98971 1.22151 0.99929 1.00222 0.98442 1.21339 0.93738 0.93795 1.46298 0.90399 1.25753 1.01691 0.96091 0.95305 1.70116 1.25719 1.11612 1.48813 0.85471 0.78167 0.79192 0.78263 1.21030 1.21762 1.17658 1.46340 1.04219 1.09092 1.56619 1.21919 1.05782 0.77014 0.93434 1.29034 1.02870 1.18928 0.99090 1.69855 1.01092 0.85477 0.92703 1.27610 1.15680 1.08397 1.12900 1.93025 1.85566 1.74399 1.37353 1.22874 0.96261 0.97730 0.98408 1.23048 0.98255 0.98248 0.99798 1.22760 0.97844 0.96130 0.99077 0.87257 0.89142 0.88029 0.87910 0.89204 0.96035 0.94843 0.94658 0.93108 0.93228 0.83439 0.84459 0.86767 0.89905 0.82472 0.91107 0.88749 0.91027 0.94711 0.87629 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 9.61 71.24 0.68 -0.27 16 2 C 0.18 4.86 6.03 137.64 0.83 5.69 16 3 N -0.34 -13.50 12.06 -49.54 -0.60 -14.10 16 4 N -0.37 -16.75 9.30 -58.00 -0.54 -17.29 16 5 C 0.38 14.04 4.17 260.11 1.08 15.13 16 6 N -0.45 -17.19 2.61 -710.98 -1.86 -19.05 16 7 C 0.03 0.88 8.38 127.69 1.07 1.95 16 8 C 0.25 12.32 2.01 44.17 0.09 12.41 16 9 H -0.01 -0.47 7.91 -2.39 -0.02 -0.49 16 10 C -0.15 -7.53 7.88 71.98 0.57 -6.97 16 11 C -0.51 -26.47 7.83 25.60 0.20 -26.27 16 12 H 0.08 3.74 7.31 -2.91 -0.02 3.72 16 13 C 0.01 0.56 5.30 84.65 0.45 1.01 16 14 N -0.92 -54.14 11.39 21.45 0.24 -53.90 16 15 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 19 N -0.47 -12.16 1.62 -514.84 -0.83 -12.99 16 20 C 0.14 1.99 5.17 86.38 0.45 2.44 16 21 C -0.40 -7.51 1.29 -10.27 -0.01 -7.52 16 22 S 1.31 17.72 13.35 -56.49 -0.75 16.97 16 23 C -0.49 -2.52 10.11 113.37 1.15 -1.37 16 24 O -0.91 -25.93 17.53 -148.98 -2.61 -28.54 16 25 C -0.12 -2.65 6.86 31.12 0.21 -2.44 16 26 C -0.15 -5.09 7.29 31.12 0.23 -4.86 16 27 C -0.12 -3.59 6.82 31.12 0.21 -3.37 16 28 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 0.91 5.35 -2.39 -0.01 0.90 16 31 H 0.10 1.94 5.96 -2.39 -0.01 1.92 16 32 H 0.09 2.85 6.78 -2.39 -0.02 2.84 16 33 H 0.02 0.69 6.96 -2.39 -0.02 0.67 16 34 H 0.03 1.68 5.95 -2.39 -0.01 1.67 16 35 H 0.03 1.65 6.94 -2.38 -0.02 1.64 16 36 H 0.05 2.92 6.27 -2.39 -0.01 2.90 16 37 H 0.26 14.57 8.31 -92.71 -0.77 13.79 16 38 H 0.15 0.61 6.64 -2.39 -0.02 0.59 16 39 H 0.14 1.27 5.88 -2.39 -0.01 1.25 16 40 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 42 H 0.16 -0.47 7.59 -2.39 -0.02 -0.49 16 43 H 0.07 1.85 7.60 -2.39 -0.02 1.83 16 44 H 0.09 1.70 4.92 -2.39 -0.01 1.69 16 45 H 0.07 2.67 3.60 -2.39 -0.01 2.66 16 46 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.11 3.66 5.10 -2.39 -0.01 3.64 16 48 H 0.07 2.14 8.10 -2.38 -0.02 2.12 16 Total: -1.00 -88.08 365.37 3.27 -84.81 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.99 Total: 14.17 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: 7.21 Total: -14.45 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -3.58 Total: -117.33 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -2.61 Total: -28.54 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 17.72 SS G_CDS: -0.75 Total: 16.97 kcal Total: -88.08 3.27 -84.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395840422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.767 kcal (2) G-P(sol) polarization free energy of solvation -88.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds