Wall clock time and date at job start Sat Apr 11 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30289 * 126.35336 * 2 1 4 4 N 1.28526 * 110.05689 * 180.02562 * 3 2 1 5 5 C 1.31218 * 109.86142 * 359.97438 * 4 3 2 6 6 N 1.38580 * 126.47513 * 179.97438 * 5 4 3 7 7 C 1.46902 * 110.99539 * 249.09078 * 6 5 4 8 8 C 1.46900 * 110.99849 * 13.03938 * 6 5 4 9 9 H 1.09001 * 109.47295 * 55.00563 * 8 6 5 10 10 C 1.52999 * 109.47411 * 295.00309 * 8 6 5 11 11 C 1.50699 * 109.46989 * 175.00213 * 8 6 5 12 12 H 1.08004 * 119.99998 * 0.02562 * 11 8 6 13 13 C 1.37879 * 120.00243 * 180.02562 * 11 8 6 14 14 N 1.31510 * 120.00112 * 180.02562 * 13 11 8 15 15 Si 1.86797 * 119.99772 * 0.02562 * 13 11 8 16 16 H 1.48502 * 109.47381 * 270.00137 * 15 13 11 17 17 H 1.48501 * 109.47435 * 29.99973 * 15 13 11 18 18 H 1.48498 * 109.47135 * 149.99865 * 15 13 11 19 19 N 1.36454 * 107.05014 * 0.22827 * 5 4 3 20 20 C 1.46500 * 127.13325 * 179.77411 * 19 5 4 21 21 C 1.53001 * 109.47139 * 88.33718 * 20 19 5 22 22 S 1.81398 * 112.84873 * 163.57692 * 21 20 19 23 23 C 1.81404 * 103.00340 * 301.26527 * 22 21 20 24 24 O 1.42109 * 109.47158 * 57.65198 * 22 21 20 25 25 C 1.53785 * 113.61513 * 32.27264 * 21 20 19 26 26 C 1.53777 * 87.07660 * 220.01715 * 25 21 20 27 27 C 1.53781 * 87.08776 * 25.43197 * 26 25 21 28 28 H 1.09000 * 109.47219 * 93.53732 * 1 2 3 29 29 H 1.08993 * 109.47310 * 213.54579 * 1 2 3 30 30 H 1.09004 * 109.46470 * 333.54294 * 1 2 3 31 31 H 1.09002 * 109.47004 * 177.42620 * 7 6 5 32 32 H 1.08998 * 109.47220 * 297.42699 * 7 6 5 33 33 H 1.09003 * 109.46963 * 57.42964 * 7 6 5 34 34 H 1.09001 * 109.47098 * 300.00375 * 10 8 6 35 35 H 1.09001 * 109.47053 * 60.00155 * 10 8 6 36 36 H 1.08992 * 109.47175 * 179.97438 * 10 8 6 37 37 H 0.97003 * 119.99896 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.46872 * 208.33888 * 20 19 5 39 39 H 1.08994 * 109.47194 * 328.33325 * 20 19 5 40 40 H 1.09003 * 109.46852 * 64.39880 * 23 22 21 41 41 H 1.08993 * 109.47704 * 184.39989 * 23 22 21 42 42 H 1.09001 * 109.47025 * 304.40360 * 23 22 21 43 43 H 1.09001 * 113.61255 * 334.56797 * 25 21 20 44 44 H 1.09001 * 113.61669 * 105.46830 * 25 21 20 45 45 H 1.08996 * 113.61579 * 270.88104 * 26 25 21 46 46 H 1.09004 * 113.61229 * 139.98212 * 26 25 21 47 47 H 1.08995 * 113.61637 * 220.02009 * 27 26 25 48 48 H 1.09000 * 113.69164 * 89.12282 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0493 0.0000 4 7 3.5130 0.6887 -0.0005 5 6 3.5946 -0.6210 -0.0004 6 7 4.7580 -1.3739 -0.0013 7 6 4.9327 -2.0711 -1.2825 8 6 5.9261 -0.5382 0.3069 9 1 5.7625 -0.0191 1.2513 10 6 6.1286 0.4873 -0.8104 11 6 7.1513 -1.4087 0.4179 12 1 7.0703 -2.4759 0.2734 13 6 8.3756 -0.8427 0.7037 14 7 9.4448 -1.6022 0.8001 15 14 8.5155 1.0032 0.9542 16 1 8.7948 1.6597 -0.3482 17 1 7.2407 1.5256 1.5085 18 1 9.6222 1.2917 1.9014 19 7 2.3174 -1.1014 -0.0049 20 6 1.9009 -2.5060 -0.0110 21 6 1.7930 -3.0122 1.4287 22 16 0.8468 -4.5540 1.5642 23 6 -0.7682 -4.1039 0.8715 24 8 1.4490 -5.5523 0.7517 25 6 1.3580 -1.9303 2.4313 26 6 2.3812 -2.5347 3.4072 27 6 3.1390 -3.0483 2.1716 28 1 -0.3634 -0.0634 -1.0257 29 1 -0.3633 -0.8564 0.5678 30 1 -0.3632 0.9201 0.4579 31 1 5.8757 -2.6178 -1.2730 32 1 4.1092 -2.7695 -1.4314 33 1 4.9430 -1.3431 -2.0938 34 1 6.2922 -0.0318 -1.7548 35 1 5.2425 1.1169 -0.8906 36 1 6.9951 1.1076 -0.5814 37 1 10.3061 -1.2040 1.0016 38 1 0.9314 -2.5952 -0.5013 39 1 2.6372 -3.1009 -0.5512 40 1 -0.6542 -3.8537 -0.1833 41 1 -1.4544 -4.9447 0.9733 42 1 -1.1665 -3.2428 1.4082 43 1 1.6034 -0.9168 2.1137 44 1 0.3248 -2.0325 2.7632 45 1 1.9729 -3.3300 4.0307 46 1 2.9330 -1.7885 3.9789 47 1 3.5435 -4.0530 2.2938 48 1 3.8717 -2.3415 1.7821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001395840427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:58 Heat of formation + Delta-G solvation = 108.971761 kcal Electronic energy + Delta-G solvation = -30184.044828 eV Core-core repulsion = 26405.020467 eV Total energy + Delta-G solvation = -3779.024361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.84654 -39.00905 -37.64257 -35.98013 -34.48208 -32.87021 -31.61308 -29.94610 -29.55749 -28.62959 -27.51142 -25.73548 -25.39077 -24.89741 -23.66066 -21.88494 -20.91243 -19.81876 -19.42480 -17.37782 -16.94389 -16.86298 -16.60007 -15.79902 -15.46491 -15.20503 -14.89606 -14.67183 -14.43637 -14.31368 -13.97044 -13.80142 -13.59217 -13.47510 -12.99666 -12.96587 -12.76647 -12.44915 -12.27140 -12.23479 -12.14166 -11.91191 -11.70980 -11.41615 -11.35003 -11.11355 -10.89110 -10.80762 -10.55264 -10.38559 -10.23085 -10.07868 -9.92697 -9.86418 -9.56270 -9.04556 -9.01035 -8.60273 -8.54656 -7.63397 -6.12671 -4.13591 1.19709 1.99303 2.22752 2.58528 3.18963 3.30079 3.40812 3.43154 3.46494 4.09311 4.27668 4.31293 4.38967 4.46581 4.56056 4.70426 4.74947 4.82869 4.87188 4.94979 5.07728 5.21074 5.23686 5.29582 5.44155 5.48183 5.57185 5.60076 5.77812 5.79742 5.88668 5.90081 6.01185 6.06085 6.15128 6.17363 6.32025 6.46490 6.55592 6.61913 6.65111 6.80024 7.08102 7.14408 7.49302 7.59339 7.88456 8.50329 8.88588 9.15775 9.48072 10.99128 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.004414 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.244577 B = 6341.510664 C = 7283.708382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.152 3.848 3 N -0.288 5.288 4 N -0.320 5.320 5 C 0.381 3.619 6 N -0.442 5.442 7 C 0.031 3.969 8 C 0.201 3.799 9 H 0.050 0.950 10 C -0.193 4.193 11 C -0.515 4.515 12 H 0.084 0.916 13 C 0.078 3.922 14 N -0.894 5.894 15 Si 0.883 3.117 16 H -0.279 1.279 17 H -0.262 1.262 18 H -0.297 1.297 19 N -0.474 5.474 20 C 0.134 3.866 21 C -0.429 4.429 22 S 1.276 4.724 23 C -0.496 4.496 24 O -0.839 6.839 25 C -0.096 4.096 26 C -0.143 4.143 27 C -0.105 4.105 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.034 0.966 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.266 0.734 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.760 -4.153 4.006 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 N -0.128 5.128 4 N -0.164 5.164 5 C 0.025 3.975 6 N -0.165 5.165 7 C -0.115 4.115 8 C 0.095 3.905 9 H 0.067 0.933 10 C -0.252 4.252 11 C -0.553 4.553 12 H 0.102 0.898 13 C -0.125 4.125 14 N -0.532 5.532 15 Si 0.713 3.287 16 H -0.206 1.206 17 H -0.187 1.187 18 H -0.224 1.224 19 N -0.170 5.170 20 C 0.010 3.990 21 C -0.526 4.526 22 S 1.472 4.528 23 C -0.653 4.653 24 O -0.835 6.835 25 C -0.135 4.135 26 C -0.180 4.180 27 C -0.143 4.143 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.851 -3.979 4.732 23.673 hybrid contribution 0.133 0.773 -2.744 2.854 sum -22.718 -3.206 1.988 23.029 Atomic orbital electron populations 1.20139 0.84538 1.04157 1.03140 1.24491 0.96165 0.82700 1.08188 1.73965 0.97026 1.24218 1.17583 1.74781 1.10640 1.07398 1.23605 1.23176 0.85042 0.89341 0.99931 1.59140 0.99430 1.27385 1.30551 1.22466 1.03512 0.97660 0.87910 1.19768 0.85902 0.90130 0.94709 0.93252 1.22940 1.01454 1.00448 1.00315 1.20833 0.89494 0.95449 1.49518 0.89815 1.24799 0.95482 0.97816 0.94357 1.69864 0.99358 1.35493 1.48483 0.86916 0.77807 0.86250 0.77698 1.20574 1.18715 1.22425 1.46170 1.06018 1.07475 1.57362 1.21735 1.01586 0.79483 0.96235 1.29748 1.10457 1.14352 0.98086 1.70509 0.85714 0.80741 1.15839 1.27723 1.18749 1.09494 1.09350 1.93151 1.73070 1.45146 1.72105 1.22673 0.99211 0.97437 0.94154 1.22884 0.97777 1.00915 0.96462 1.22917 0.93372 1.03796 0.94193 0.90574 0.90879 0.88877 0.87695 0.93377 0.94699 0.93507 0.91207 0.93593 0.92442 0.89974 0.87952 0.90007 0.87316 0.86794 0.89182 0.90643 0.89408 0.90621 0.91027 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 9.96 36.01 0.36 -0.17 16 2 C 0.15 2.18 6.14 -154.02 -0.95 1.24 16 3 N -0.29 -5.37 12.18 32.99 0.40 -4.97 16 4 N -0.32 -6.74 8.99 30.31 0.27 -6.46 16 5 C 0.38 7.27 5.70 -318.87 -1.82 5.45 16 6 N -0.44 -9.02 3.06 -176.08 -0.54 -9.56 16 7 C 0.03 0.59 8.60 60.07 0.52 1.11 16 8 C 0.20 4.80 1.66 -68.87 -0.11 4.69 16 9 H 0.05 1.28 7.16 -51.93 -0.37 0.91 16 10 C -0.19 -4.51 7.97 37.16 0.30 -4.22 16 11 C -0.51 -13.93 8.43 -34.44 -0.29 -14.22 16 12 H 0.08 2.42 7.03 -52.48 -0.37 2.05 16 13 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 14 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 15 Si 0.88 22.28 24.37 -169.99 -4.14 18.13 16 16 H -0.28 -6.94 6.87 56.52 0.39 -6.56 16 17 H -0.26 -6.57 6.53 56.52 0.37 -6.20 16 18 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 19 N -0.47 -7.08 1.88 -114.08 -0.21 -7.29 16 20 C 0.13 1.64 5.55 -4.04 -0.02 1.62 16 21 C -0.43 -4.40 1.16 -89.80 -0.10 -4.51 16 22 S 1.28 10.08 12.94 -107.50 -1.39 8.69 16 23 C -0.50 -2.67 10.26 101.05 1.04 -1.63 16 24 O -0.84 -12.25 18.14 -35.23 -0.64 -12.89 16 25 C -0.10 -0.86 6.25 -25.92 -0.16 -1.03 16 26 C -0.14 -1.38 7.82 -25.92 -0.20 -1.58 16 27 C -0.10 -1.37 7.16 -25.92 -0.19 -1.56 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.46 7.42 -51.93 -0.39 0.07 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 2.13 6.35 -51.93 -0.33 1.80 16 32 H 0.05 0.79 5.74 -51.93 -0.30 0.49 16 33 H 0.03 0.65 6.65 -51.93 -0.35 0.31 16 34 H 0.05 1.05 6.53 -51.93 -0.34 0.71 16 35 H 0.07 1.61 5.44 -51.93 -0.28 1.33 16 36 H 0.05 1.12 3.28 -51.93 -0.17 0.95 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.08 0.79 6.30 -51.93 -0.33 0.46 16 39 H 0.10 1.45 5.68 -51.93 -0.29 1.16 16 40 H 0.08 0.54 7.08 -51.92 -0.37 0.17 16 41 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.11 0.33 7.96 -51.92 -0.41 -0.09 16 43 H 0.09 1.10 5.33 -51.93 -0.28 0.82 16 44 H 0.08 0.38 7.92 -51.93 -0.41 -0.03 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 48 H 0.12 2.13 5.02 -51.93 -0.26 1.87 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -36.89 366.12 -8.65 -45.54 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.96 Total: 1.93 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.73 Total: -12.69 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.69 Total: -54.22 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.64 Total: -12.89 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.14 Total: 18.13 kcal Atomic # 16 Polarization: 10.08 SS G_CDS: -1.39 Total: 8.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.89 -8.65 -45.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395840427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.512 kcal (2) G-P(sol) polarization free energy of solvation -36.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds