Wall clock time and date at job start Sat Apr 11 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30289 * 126.35336 * 2 1 4 4 N 1.28526 * 110.05689 * 180.02562 * 3 2 1 5 5 C 1.31218 * 109.86142 * 359.97438 * 4 3 2 6 6 N 1.38580 * 126.47513 * 179.97438 * 5 4 3 7 7 C 1.46902 * 110.99539 * 249.09078 * 6 5 4 8 8 C 1.46900 * 110.99849 * 13.03938 * 6 5 4 9 9 H 1.09001 * 109.47295 * 55.00563 * 8 6 5 10 10 C 1.52999 * 109.47411 * 295.00309 * 8 6 5 11 11 C 1.50699 * 109.46989 * 175.00213 * 8 6 5 12 12 H 1.08004 * 119.99998 * 0.02562 * 11 8 6 13 13 C 1.37879 * 120.00243 * 180.02562 * 11 8 6 14 14 N 1.31510 * 120.00112 * 180.02562 * 13 11 8 15 15 Si 1.86797 * 119.99772 * 0.02562 * 13 11 8 16 16 H 1.48502 * 109.47381 * 270.00137 * 15 13 11 17 17 H 1.48501 * 109.47435 * 29.99973 * 15 13 11 18 18 H 1.48498 * 109.47135 * 149.99865 * 15 13 11 19 19 N 1.36454 * 107.05014 * 0.22827 * 5 4 3 20 20 C 1.46500 * 127.13325 * 179.77411 * 19 5 4 21 21 C 1.53001 * 109.47139 * 88.33718 * 20 19 5 22 22 S 1.81398 * 112.84873 * 163.57692 * 21 20 19 23 23 C 1.81404 * 103.00340 * 301.26527 * 22 21 20 24 24 O 1.42109 * 109.47158 * 57.65198 * 22 21 20 25 25 C 1.53785 * 113.61513 * 32.27264 * 21 20 19 26 26 C 1.53777 * 87.07660 * 220.01715 * 25 21 20 27 27 C 1.53781 * 87.08776 * 25.43197 * 26 25 21 28 28 H 1.09000 * 109.47219 * 93.53732 * 1 2 3 29 29 H 1.08993 * 109.47310 * 213.54579 * 1 2 3 30 30 H 1.09004 * 109.46470 * 333.54294 * 1 2 3 31 31 H 1.09002 * 109.47004 * 177.42620 * 7 6 5 32 32 H 1.08998 * 109.47220 * 297.42699 * 7 6 5 33 33 H 1.09003 * 109.46963 * 57.42964 * 7 6 5 34 34 H 1.09001 * 109.47098 * 300.00375 * 10 8 6 35 35 H 1.09001 * 109.47053 * 60.00155 * 10 8 6 36 36 H 1.08992 * 109.47175 * 179.97438 * 10 8 6 37 37 H 0.97003 * 119.99896 * 180.02562 * 14 13 11 38 38 H 1.09002 * 109.46872 * 208.33888 * 20 19 5 39 39 H 1.08994 * 109.47194 * 328.33325 * 20 19 5 40 40 H 1.09003 * 109.46852 * 64.39880 * 23 22 21 41 41 H 1.08993 * 109.47704 * 184.39989 * 23 22 21 42 42 H 1.09001 * 109.47025 * 304.40360 * 23 22 21 43 43 H 1.09001 * 113.61255 * 334.56797 * 25 21 20 44 44 H 1.09001 * 113.61669 * 105.46830 * 25 21 20 45 45 H 1.08996 * 113.61579 * 270.88104 * 26 25 21 46 46 H 1.09004 * 113.61229 * 139.98212 * 26 25 21 47 47 H 1.08995 * 113.61637 * 220.02009 * 27 26 25 48 48 H 1.09000 * 113.69164 * 89.12282 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0493 0.0000 4 7 3.5130 0.6887 -0.0005 5 6 3.5946 -0.6210 -0.0004 6 7 4.7580 -1.3739 -0.0013 7 6 4.9327 -2.0711 -1.2825 8 6 5.9261 -0.5382 0.3069 9 1 5.7625 -0.0191 1.2513 10 6 6.1286 0.4873 -0.8104 11 6 7.1513 -1.4087 0.4179 12 1 7.0703 -2.4759 0.2734 13 6 8.3756 -0.8427 0.7037 14 7 9.4448 -1.6022 0.8001 15 14 8.5155 1.0032 0.9542 16 1 8.7948 1.6597 -0.3482 17 1 7.2407 1.5256 1.5085 18 1 9.6222 1.2917 1.9014 19 7 2.3174 -1.1014 -0.0049 20 6 1.9009 -2.5060 -0.0110 21 6 1.7930 -3.0122 1.4287 22 16 0.8468 -4.5540 1.5642 23 6 -0.7682 -4.1039 0.8715 24 8 1.4490 -5.5523 0.7517 25 6 1.3580 -1.9303 2.4313 26 6 2.3812 -2.5347 3.4072 27 6 3.1390 -3.0483 2.1716 28 1 -0.3634 -0.0634 -1.0257 29 1 -0.3633 -0.8564 0.5678 30 1 -0.3632 0.9201 0.4579 31 1 5.8757 -2.6178 -1.2730 32 1 4.1092 -2.7695 -1.4314 33 1 4.9430 -1.3431 -2.0938 34 1 6.2922 -0.0318 -1.7548 35 1 5.2425 1.1169 -0.8906 36 1 6.9951 1.1076 -0.5814 37 1 10.3061 -1.2040 1.0016 38 1 0.9314 -2.5952 -0.5013 39 1 2.6372 -3.1009 -0.5512 40 1 -0.6542 -3.8537 -0.1833 41 1 -1.4544 -4.9447 0.9733 42 1 -1.1665 -3.2428 1.4082 43 1 1.6034 -0.9168 2.1137 44 1 0.3248 -2.0325 2.7632 45 1 1.9729 -3.3300 4.0307 46 1 2.9330 -1.7885 3.9789 47 1 3.5435 -4.0530 2.2938 48 1 3.8717 -2.3415 1.7821 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001395840427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:57 Heat of formation + Delta-G solvation = 82.824752 kcal Electronic energy + Delta-G solvation = -30185.178648 eV Core-core repulsion = 26405.020467 eV Total energy + Delta-G solvation = -3780.158180 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -44.13880 -39.90673 -39.34189 -36.89835 -35.66332 -34.86992 -32.89453 -31.58444 -30.45021 -29.45348 -28.66031 -27.30219 -26.70538 -26.44395 -24.63850 -23.49391 -21.97672 -21.21442 -20.63334 -18.83691 -18.10030 -17.97187 -17.85586 -17.30410 -16.90216 -16.52013 -16.02250 -15.72941 -15.66241 -15.43685 -15.10132 -15.05594 -14.56771 -14.54773 -14.39608 -14.18756 -13.62831 -13.61006 -13.47191 -13.42133 -13.31636 -13.15930 -12.98636 -12.89550 -12.74046 -12.40843 -12.29957 -12.19473 -12.07661 -11.72942 -11.58868 -11.48374 -11.22039 -11.06451 -11.02621 -10.86429 -10.83865 -10.43795 -9.29671 -9.13461 -8.36289 -6.39773 0.53700 0.78622 1.23771 1.25078 1.31507 1.42255 1.72844 1.84311 2.25370 2.69678 2.84342 2.99426 3.21083 3.41906 3.49335 3.66675 3.84477 3.88215 3.98743 4.05322 4.09632 4.27777 4.32107 4.36621 4.46203 4.49084 4.56622 4.60304 4.70505 4.71906 4.82972 4.84952 4.88252 4.92135 4.97598 5.05564 5.09342 5.11229 5.18315 5.23263 5.26255 5.30130 5.46767 5.60410 5.72778 5.79194 6.13058 6.50858 6.63631 7.24387 7.81799 8.79069 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.004414 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.244577 B = 6341.510664 C = 7283.708382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.184 3.816 3 N -0.333 5.333 4 N -0.360 5.360 5 C 0.362 3.638 6 N -0.443 5.443 7 C 0.038 3.962 8 C 0.214 3.786 9 H 0.027 0.973 10 C -0.183 4.183 11 C -0.508 4.508 12 H 0.054 0.946 13 C 0.032 3.968 14 N -0.935 5.935 15 Si 0.937 3.063 16 H -0.270 1.270 17 H -0.263 1.263 18 H -0.291 1.291 19 N -0.464 5.464 20 C 0.124 3.876 21 C -0.421 4.421 22 S 1.325 4.675 23 C -0.489 4.489 24 O -0.912 6.912 25 C -0.085 4.085 26 C -0.136 4.136 27 C -0.131 4.131 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.269 0.731 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.125 0.875 42 H 0.155 0.845 43 H 0.058 0.942 44 H 0.134 0.866 45 H 0.131 0.869 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.930 -3.849 4.601 29.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.085 4.085 3 N -0.172 5.172 4 N -0.203 5.203 5 C 0.004 3.996 6 N -0.166 5.166 7 C -0.109 4.109 8 C 0.107 3.893 9 H 0.045 0.955 10 C -0.241 4.241 11 C -0.547 4.547 12 H 0.072 0.928 13 C -0.167 4.167 14 N -0.575 5.575 15 Si 0.765 3.235 16 H -0.196 1.196 17 H -0.188 1.188 18 H -0.218 1.218 19 N -0.159 5.159 20 C 0.001 3.999 21 C -0.517 4.517 22 S 1.523 4.477 23 C -0.649 4.649 24 O -0.907 6.907 25 C -0.123 4.123 26 C -0.173 4.173 27 C -0.169 4.169 28 H 0.115 0.885 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.139 0.861 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.144 0.856 42 H 0.174 0.826 43 H 0.077 0.923 44 H 0.152 0.848 45 H 0.149 0.851 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -28.016 -3.674 5.328 28.753 hybrid contribution 1.523 0.573 -2.938 3.359 sum -26.493 -3.100 2.390 26.780 Atomic orbital electron populations 1.20554 0.79823 1.06611 1.05344 1.25625 0.98184 0.81201 1.03439 1.73877 0.96601 1.26073 1.20663 1.74598 1.12598 1.08511 1.24638 1.22864 0.85827 0.89171 1.01729 1.58944 0.99198 1.27143 1.31333 1.22391 1.03346 0.97715 0.87424 1.19344 0.86152 0.89818 0.94023 0.95513 1.22818 1.01228 1.00083 1.00010 1.20978 0.90917 0.94549 1.48207 0.92803 1.25460 0.95265 1.01608 0.94408 1.69972 0.99989 1.37267 1.50243 0.86032 0.77695 0.81732 0.78004 1.19619 1.18751 1.21820 1.46275 1.04470 1.08799 1.56348 1.22043 1.02445 0.77533 0.97889 1.29835 1.09096 1.16072 0.96671 1.69677 0.85558 0.77724 1.14735 1.27682 1.15835 1.11986 1.09414 1.93046 1.75435 1.48374 1.73880 1.22642 1.02081 0.94944 0.92681 1.22975 0.97231 1.01483 0.95590 1.22855 0.94467 1.01981 0.97644 0.88461 0.87104 0.87594 0.89977 0.90951 0.94866 0.93262 0.90632 0.94510 0.92202 0.86146 0.90594 0.90462 0.85648 0.82634 0.92306 0.84800 0.85080 0.92874 0.92392 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 9.96 71.24 0.71 -0.07 16 2 C 0.18 4.82 6.14 137.64 0.85 5.67 16 3 N -0.33 -12.19 12.18 -49.54 -0.60 -12.79 16 4 N -0.36 -15.41 8.99 -58.00 -0.52 -15.93 16 5 C 0.36 14.12 5.70 260.11 1.48 15.60 16 6 N -0.44 -19.11 3.06 -710.99 -2.18 -21.29 16 7 C 0.04 1.52 8.60 127.69 1.10 2.62 16 8 C 0.21 10.76 1.66 44.17 0.07 10.83 16 9 H 0.03 1.47 7.16 -2.39 -0.02 1.46 16 10 C -0.18 -8.81 7.97 71.98 0.57 -8.23 16 11 C -0.51 -29.12 8.43 25.60 0.22 -28.90 16 12 H 0.05 3.35 7.03 -2.91 -0.02 3.33 16 13 C 0.03 1.87 5.45 84.66 0.46 2.33 16 14 N -0.94 -58.09 13.96 21.45 0.30 -57.79 16 15 Si 0.94 47.38 24.37 68.60 1.67 49.05 16 16 H -0.27 -13.18 6.87 99.48 0.68 -12.50 16 17 H -0.26 -13.20 6.53 99.48 0.65 -12.55 16 18 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 19 N -0.46 -13.28 1.88 -514.85 -0.97 -14.25 16 20 C 0.12 2.78 5.55 86.38 0.48 3.26 16 21 C -0.42 -7.65 1.16 -10.27 -0.01 -7.66 16 22 S 1.32 16.41 12.94 -56.49 -0.73 15.68 16 23 C -0.49 -2.11 10.26 113.37 1.16 -0.94 16 24 O -0.91 -25.66 18.14 -148.98 -2.70 -28.36 16 25 C -0.09 -1.20 6.25 31.12 0.19 -1.00 16 26 C -0.14 -2.38 7.82 31.12 0.24 -2.14 16 27 C -0.13 -3.51 7.16 31.12 0.22 -3.29 16 28 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.11 0.53 7.42 -2.39 -0.02 0.51 16 30 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.08 3.60 6.35 -2.39 -0.02 3.59 16 32 H 0.07 2.48 5.74 -2.39 -0.01 2.46 16 33 H 0.03 1.30 6.65 -2.39 -0.02 1.28 16 34 H 0.05 2.29 6.53 -2.39 -0.02 2.27 16 35 H 0.08 3.59 5.44 -2.39 -0.01 3.57 16 36 H 0.04 1.81 3.28 -2.39 -0.01 1.80 16 37 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.12 1.76 6.30 -2.39 -0.02 1.74 16 39 H 0.08 2.14 5.68 -2.39 -0.01 2.13 16 40 H 0.08 0.54 7.08 -2.39 -0.02 0.52 16 41 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.16 -0.52 7.96 -2.39 -0.02 -0.54 16 43 H 0.06 1.26 5.33 -2.39 -0.01 1.25 16 44 H 0.13 0.33 7.92 -2.39 -0.02 0.31 16 45 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 47 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 48 H 0.08 2.88 5.02 -2.39 -0.01 2.87 16 Total: -1.00 -89.61 366.12 2.93 -86.68 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.91 Total: 10.94 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 7.75 Total: -11.94 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -3.97 Total: -122.05 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -2.70 Total: -28.36 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.67 Total: 49.05 kcal Atomic # 16 Polarization: 16.41 SS G_CDS: -0.73 Total: 15.68 kcal Total: -89.61 2.93 -86.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395840427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.502 kcal (2) G-P(sol) polarization free energy of solvation -89.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds