Wall clock time and date at job start Sat Apr 11 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.47082 * 2 1 4 4 N 1.30299 * 126.34381 * 278.08830 * 3 2 1 5 5 N 1.28533 * 110.05103 * 179.76208 * 4 3 2 6 6 C 1.31222 * 109.85620 * 0.45589 * 5 4 3 7 7 N 1.38576 * 126.46588 * 179.82755 * 6 5 4 8 8 C 1.46896 * 111.00590 * 102.71074 * 7 6 5 9 9 C 1.46901 * 111.00169 * 338.75280 * 7 6 5 10 10 H 1.08999 * 109.47083 * 60.00517 * 9 7 6 11 11 C 1.52998 * 109.47214 * 300.00454 * 9 7 6 12 12 C 1.50698 * 109.47219 * 180.02562 * 9 7 6 13 13 H 1.08001 * 120.00261 * 3.74803 * 12 9 7 14 14 C 1.37875 * 120.00328 * 183.75064 * 12 9 7 15 15 N 1.31512 * 119.99887 * 7.64351 * 14 12 9 16 16 Si 1.86796 * 120.00266 * 187.64330 * 14 12 9 17 17 H 1.48501 * 109.47102 * 84.99676 * 16 14 12 18 18 H 1.48502 * 109.47155 * 204.99435 * 16 14 12 19 19 H 1.48491 * 109.47284 * 324.99630 * 16 14 12 20 20 N 1.36446 * 107.05757 * 359.55290 * 6 5 4 21 21 C 1.46500 * 127.13667 * 180.28188 * 20 6 5 22 22 C 1.53002 * 109.47416 * 266.84889 * 21 20 6 23 23 S 1.81397 * 115.55300 * 278.58977 * 22 21 20 24 24 C 1.81404 * 102.99969 * 308.22143 * 23 22 21 25 25 O 1.42098 * 109.47113 * 191.83850 * 23 22 21 26 26 C 1.52994 * 117.49560 * 132.87676 * 22 21 20 27 27 C 1.52999 * 60.00296 * 252.51190 * 26 22 21 28 28 H 1.08999 * 109.47143 * 175.07664 * 1 2 3 29 29 H 1.08998 * 109.47411 * 295.08289 * 1 2 3 30 30 H 1.09006 * 109.46443 * 55.08491 * 1 2 3 31 31 H 1.08999 * 109.47154 * 239.99945 * 2 1 3 32 32 H 1.08998 * 109.46884 * 119.99488 * 2 1 3 33 33 H 1.08998 * 109.47069 * 301.36603 * 8 7 6 34 34 H 1.09003 * 109.47241 * 61.36063 * 8 7 6 35 35 H 1.08997 * 109.47384 * 181.35925 * 8 7 6 36 36 H 1.09005 * 109.47397 * 65.44822 * 11 9 7 37 37 H 1.08997 * 109.47331 * 185.45594 * 11 9 7 38 38 H 1.09008 * 109.47068 * 305.45394 * 11 9 7 39 39 H 0.96999 * 120.00611 * 179.97438 * 15 14 12 40 40 H 1.08995 * 109.47403 * 26.85181 * 21 20 6 41 41 H 1.09005 * 109.46870 * 146.85395 * 21 20 6 42 42 H 1.09004 * 109.46726 * 68.10248 * 24 23 22 43 43 H 1.08989 * 109.47177 * 188.09987 * 24 23 22 44 44 H 1.08998 * 109.46815 * 308.10834 * 24 23 22 45 45 H 1.09006 * 117.50408 * 0.02562 * 26 22 21 46 46 H 1.09005 * 117.49643 * 145.02435 * 26 22 21 47 47 H 1.08998 * 117.50224 * 252.50748 * 27 26 22 48 48 H 1.09005 * 117.51207 * 107.48246 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.1505 2.1981 -1.0391 5 7 2.6049 3.3460 -0.6814 6 6 2.8118 3.3594 0.6144 7 7 3.3001 4.4208 1.3595 8 6 2.2173 5.0951 2.0880 9 6 4.0321 5.3687 0.5087 10 1 3.3638 5.7589 -0.2589 11 6 5.2097 4.6530 -0.1561 12 6 4.5475 6.5062 1.3521 13 1 4.4036 6.4933 2.4224 14 6 5.2028 7.5636 0.7575 15 7 5.2472 7.6561 -0.5537 16 14 6.0275 8.8647 1.8140 17 1 7.3926 8.4108 2.1825 18 1 6.1174 10.1365 1.0527 19 1 5.2282 9.0811 3.0466 20 7 2.4493 2.1331 1.0903 21 6 2.4968 1.6746 2.4809 22 6 3.8291 0.9684 2.7400 23 16 3.9163 -0.7608 2.1989 24 6 2.4452 -1.5010 2.9596 25 8 5.0834 -1.3671 2.7369 26 6 4.5978 1.3528 4.0057 27 6 5.1049 1.8065 2.6353 28 1 -0.3633 -1.0239 -0.0882 29 1 -0.3634 0.4356 0.9307 30 1 -0.3632 0.5883 -0.8428 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.4711 5.4541 1.3793 34 1 1.7527 4.3927 2.7801 35 1 2.6246 5.9386 2.6454 36 1 4.8333 3.8929 -0.8408 37 1 5.8087 5.3761 -0.7096 38 1 5.8260 4.1800 0.6085 39 1 5.7079 8.4001 -0.9721 40 1 2.4033 2.5306 3.1491 41 1 1.6763 0.9804 2.6627 42 1 1.5496 -1.0934 2.4905 43 1 2.4687 -2.5816 2.8198 44 1 2.4332 -1.2725 4.0253 45 1 4.1542 2.1084 4.6541 46 1 5.1561 0.5664 4.5137 47 1 5.9967 1.3188 2.2419 48 1 4.9950 2.8609 2.3816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401437359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:01 Heat of formation + Delta-G solvation = 90.350875 kcal Electronic energy + Delta-G solvation = -29758.978651 eV Core-core repulsion = 25979.146827 eV Total energy + Delta-G solvation = -3779.831823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.55916 -37.87572 -37.15381 -36.04419 -34.41759 -33.59531 -32.60761 -29.52794 -29.36623 -28.75514 -27.57111 -25.54842 -24.47261 -23.87902 -22.57684 -21.95543 -21.85047 -20.05354 -19.48469 -17.71354 -16.89335 -16.57500 -16.16700 -16.03803 -15.46003 -15.12722 -14.84015 -14.73729 -14.53672 -14.23981 -13.85741 -13.67730 -13.48002 -13.29202 -12.93065 -12.66360 -12.58029 -12.34751 -12.09034 -12.00744 -11.75248 -11.56595 -11.39253 -11.25769 -11.12958 -11.08527 -10.95609 -10.76499 -10.60900 -10.35954 -10.30291 -10.15245 -10.14559 -9.93856 -9.69541 -9.18424 -8.68192 -8.46079 -8.44585 -7.50679 -6.08925 -4.13750 1.22342 2.13343 2.28364 2.55292 3.27173 3.34390 3.34682 3.36978 3.40202 3.54285 4.29758 4.30842 4.43683 4.49724 4.58647 4.66067 4.75308 4.82181 4.86685 5.00885 5.10000 5.18650 5.25177 5.32905 5.45169 5.52499 5.55780 5.60580 5.62710 5.68290 5.89918 5.93533 6.03903 6.08575 6.21229 6.26581 6.34541 6.50538 6.87458 6.90331 7.04850 7.17269 7.42153 7.62140 7.71685 7.89913 8.13231 8.42841 8.88757 9.33064 9.50339 10.99312 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014646 B = 0.004082 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.335556 B = 6858.573069 C = 7902.423124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.038 4.038 3 C 0.149 3.851 4 N -0.281 5.281 5 N -0.313 5.313 6 C 0.386 3.614 7 N -0.463 5.463 8 C 0.041 3.959 9 C 0.229 3.771 10 H 0.031 0.969 11 C -0.130 4.130 12 C -0.519 4.519 13 H 0.064 0.936 14 C 0.067 3.933 15 N -0.881 5.881 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.275 1.275 20 N -0.477 5.477 21 C 0.175 3.825 22 C -0.482 4.482 23 S 1.274 4.726 24 C -0.501 4.501 25 O -0.844 6.844 26 C -0.142 4.142 27 C -0.111 4.111 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.042 0.958 35 H 0.097 0.903 36 H 0.027 0.973 37 H 0.075 0.925 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.420 -17.150 6.227 20.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.078 4.078 3 C -0.118 4.118 4 N -0.121 5.121 5 N -0.157 5.157 6 C 0.031 3.969 7 N -0.189 5.189 8 C -0.106 4.106 9 C 0.125 3.875 10 H 0.049 0.951 11 C -0.188 4.188 12 C -0.557 4.557 13 H 0.082 0.918 14 C -0.136 4.136 15 N -0.518 5.518 16 Si 0.723 3.277 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.200 1.200 20 N -0.173 5.173 21 C 0.051 3.949 22 C -0.580 4.580 23 S 1.472 4.528 24 C -0.658 4.658 25 O -0.840 6.840 26 C -0.181 4.181 27 C -0.149 4.149 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.134 0.866 43 H 0.126 0.874 44 H 0.106 0.894 45 H 0.123 0.877 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.376 -17.140 4.426 19.584 hybrid contribution 0.147 0.820 3.702 3.795 sum -8.229 -16.320 8.128 20.003 Atomic orbital electron populations 1.21781 0.93746 1.02397 1.02829 1.20113 0.96676 0.87118 1.03885 1.24490 1.06036 0.97953 0.83335 1.73964 1.15670 0.98578 1.23875 1.74841 1.18900 1.13328 1.08595 1.23041 0.96918 0.87152 0.89798 1.59189 1.22225 1.09433 1.28023 1.22310 0.92055 0.98889 0.97374 1.19329 0.90895 0.86850 0.90474 0.95143 1.21770 0.99215 0.99204 0.98618 1.20994 1.37744 1.03342 0.93667 0.91838 1.24881 0.96205 0.97634 0.94898 1.69974 1.41984 1.31341 1.08494 0.86570 0.80110 0.80802 0.80224 1.20549 1.21300 1.20019 1.46236 1.51209 1.11555 1.08327 1.20881 0.93724 0.99828 0.80504 1.29425 0.99422 1.16433 1.12742 1.70859 0.84751 0.82983 1.14236 1.27813 1.17369 1.10231 1.10362 1.93098 1.40932 1.70344 1.79611 1.22943 1.01498 1.03539 0.90076 1.23036 0.92070 1.01885 0.97923 0.91481 0.92887 0.91296 0.87761 0.91247 0.95151 0.93894 0.88425 0.95431 0.90622 0.95406 0.92693 0.87884 0.88914 0.86583 0.87444 0.89409 0.87697 0.88229 0.88469 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.90 37.16 0.37 -0.68 16 2 C -0.04 -0.31 6.27 -27.88 -0.17 -0.49 16 3 C 0.15 2.04 7.32 -154.01 -1.13 0.92 16 4 N -0.28 -5.16 12.18 32.99 0.40 -4.76 16 5 N -0.31 -6.66 10.04 30.31 0.30 -6.36 16 6 C 0.39 7.25 5.95 -318.88 -1.90 5.35 16 7 N -0.46 -9.17 3.71 -176.09 -0.65 -9.82 16 8 C 0.04 0.72 9.19 60.06 0.55 1.28 16 9 C 0.23 5.55 1.61 -68.87 -0.11 5.44 16 10 H 0.03 0.86 7.90 -51.93 -0.41 0.45 16 11 C -0.13 -3.16 8.80 37.16 0.33 -2.83 16 12 C -0.52 -13.27 7.71 -34.44 -0.27 -13.54 16 13 H 0.06 1.57 6.59 -52.49 -0.35 1.23 16 14 C 0.07 1.78 5.18 -17.82 -0.09 1.69 16 15 N -0.88 -24.67 11.96 55.43 0.66 -24.01 16 16 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 20 N -0.48 -6.77 2.76 -114.08 -0.31 -7.08 16 21 C 0.18 1.87 5.68 -4.04 -0.02 1.85 16 22 C -0.48 -5.43 2.27 -90.62 -0.21 -5.64 16 23 S 1.27 12.79 12.05 -107.50 -1.30 11.49 16 24 C -0.50 -3.36 9.53 101.05 0.96 -2.39 16 25 O -0.84 -13.21 17.64 -35.23 -0.62 -13.83 16 26 C -0.14 -1.67 9.78 -26.73 -0.26 -1.93 16 27 C -0.11 -1.56 9.96 -26.73 -0.27 -1.83 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.40 2.62 -51.93 -0.14 0.27 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.60 6.70 -51.93 -0.35 0.26 16 35 H 0.10 1.79 6.13 -51.93 -0.32 1.47 16 36 H 0.03 0.65 6.41 -51.93 -0.33 0.32 16 37 H 0.08 2.02 6.57 -51.93 -0.34 1.68 16 38 H 0.03 0.63 8.00 -51.92 -0.42 0.22 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.10 1.13 6.40 -51.93 -0.33 0.80 16 41 H 0.09 0.67 6.21 -51.93 -0.32 0.34 16 42 H 0.12 0.50 5.53 -51.92 -0.29 0.21 16 43 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 1.11 8.07 -51.93 -0.42 0.69 16 46 H 0.10 1.23 7.86 -51.93 -0.41 0.82 16 47 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 48 H 0.14 2.26 6.87 -51.93 -0.36 1.90 16 LS Contribution 385.65 15.07 5.81 5.81 Total: -1.00 -34.41 385.65 -10.23 -44.65 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.29 Total: 1.24 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -2.22 Total: -12.81 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.40 Total: -52.03 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.62 Total: -13.83 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 12.79 SS G_CDS: -1.30 Total: 11.49 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.41 -10.23 -44.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401437359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.999 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds