Wall clock time and date at job start Sat Apr 11 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46970 * 2 1 4 4 N 1.30295 * 126.35184 * 81.11239 * 3 2 1 5 5 N 1.28523 * 110.05714 * 179.97438 * 4 3 2 6 6 C 1.31222 * 109.85897 * 359.97438 * 5 4 3 7 7 N 1.38582 * 126.47129 * 179.97438 * 6 5 4 8 8 C 1.46893 * 110.99757 * 101.76140 * 7 6 5 9 9 C 1.46906 * 111.00028 * 337.80713 * 7 6 5 10 10 H 1.09000 * 109.46813 * 310.00168 * 9 7 6 11 11 C 1.52996 * 109.47166 * 70.00099 * 9 7 6 12 12 C 1.50694 * 109.46828 * 190.00282 * 9 7 6 13 13 H 1.08001 * 120.00083 * 359.97438 * 12 9 7 14 14 C 1.37878 * 120.00061 * 180.02562 * 12 9 7 15 15 N 1.31509 * 120.00661 * 179.97438 * 14 12 9 16 16 Si 1.86802 * 119.99587 * 0.02562 * 14 12 9 17 17 H 1.48500 * 109.47555 * 90.00174 * 16 14 12 18 18 H 1.48504 * 109.47127 * 210.00044 * 16 14 12 19 19 H 1.48505 * 109.47235 * 329.99684 * 16 14 12 20 20 N 1.36451 * 107.05043 * 0.23330 * 6 5 4 21 21 C 1.46497 * 127.13253 * 179.77455 * 20 6 5 22 22 C 1.53003 * 109.47676 * 98.30123 * 21 20 6 23 23 S 1.81402 * 115.55143 * 263.06511 * 22 21 20 24 24 C 1.81397 * 102.99971 * 291.62323 * 23 22 21 25 25 O 1.42091 * 109.46996 * 175.23020 * 23 22 21 26 26 C 1.52992 * 117.49969 * 117.35194 * 22 21 20 27 27 C 1.52996 * 60.00279 * 252.51575 * 26 22 21 28 28 H 1.09002 * 109.46946 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47920 * 300.00354 * 1 2 3 30 30 H 1.09006 * 109.46747 * 60.00611 * 1 2 3 31 31 H 1.09000 * 109.47819 * 239.99379 * 2 1 3 32 32 H 1.09006 * 109.46747 * 119.99389 * 2 1 3 33 33 H 1.09004 * 109.47319 * 77.06168 * 8 7 6 34 34 H 1.09005 * 109.46920 * 197.05523 * 8 7 6 35 35 H 1.08996 * 109.47238 * 317.05759 * 8 7 6 36 36 H 1.08997 * 109.47190 * 59.99538 * 11 9 7 37 37 H 1.08994 * 109.47356 * 180.02562 * 11 9 7 38 38 H 1.09000 * 109.47028 * 299.99796 * 11 9 7 39 39 H 0.96994 * 120.00882 * 180.02562 * 15 14 12 40 40 H 1.08999 * 109.47362 * 218.30154 * 21 20 6 41 41 H 1.09006 * 109.47558 * 338.29869 * 21 20 6 42 42 H 1.09001 * 109.47419 * 66.22623 * 24 23 22 43 43 H 1.08995 * 109.47430 * 186.22418 * 24 23 22 44 44 H 1.09002 * 109.46976 * 306.23096 * 24 23 22 45 45 H 1.08998 * 117.50351 * 0.02562 * 26 22 21 46 46 H 1.09002 * 117.49911 * 145.02448 * 26 22 21 47 47 H 1.09005 * 117.49695 * 252.51393 * 27 26 22 48 48 H 1.08994 * 117.52300 * 107.48020 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1368 2.2030 1.0368 5 7 2.6010 3.3473 0.6806 6 6 2.8199 3.3565 -0.6132 7 7 3.3176 4.4146 -1.3570 8 6 4.7410 4.2193 -1.6630 9 6 3.0980 5.6927 -0.6668 10 1 2.0553 5.7637 -0.3570 11 6 4.0024 5.7692 0.5648 12 6 3.4232 6.8300 -1.6004 13 1 3.7598 6.6241 -2.6057 14 6 3.2920 8.1336 -1.1708 15 7 3.5763 9.1262 -1.9852 16 14 2.7118 8.4897 0.5688 17 1 3.8853 8.5709 1.4752 18 1 1.9787 9.7809 0.5915 19 1 1.8102 7.4005 1.0226 20 7 2.4593 2.1294 -1.0887 21 6 2.5196 1.6663 -2.4772 22 6 3.7940 0.8458 -2.6864 23 16 5.1976 1.7481 -3.3981 24 6 4.6459 2.0906 -5.0918 25 8 6.3370 0.8999 -3.4334 26 6 3.6314 -0.6260 -3.0713 27 6 4.1036 -0.2507 -1.6653 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.8430 3.4934 -2.4697 34 1 5.1800 5.1684 -1.9707 35 1 5.2562 3.8513 -0.7758 36 1 5.0450 5.6980 0.2550 37 1 3.8391 6.7172 1.0772 38 1 3.7671 4.9465 1.2400 39 1 3.4844 10.0432 -1.6829 40 1 1.6491 1.0464 -2.6917 41 1 2.5272 2.5262 -3.1471 42 1 3.8006 2.7783 -5.0666 43 1 5.4630 2.5399 -5.6562 44 1 4.3426 1.1594 -5.5704 45 1 2.6165 -1.0097 -3.1760 46 1 4.3678 -1.0524 -3.7525 47 1 5.1508 -0.4302 -1.4214 48 1 3.3998 -0.3873 -0.8443 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401437360.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:05 Heat of formation + Delta-G solvation = 110.325347 kcal Electronic energy + Delta-G solvation = -29843.657615 eV Core-core repulsion = 26064.691950 eV Total energy + Delta-G solvation = -3778.965665 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.75906 -38.29453 -37.63765 -35.94973 -34.24346 -33.88318 -32.56945 -29.91433 -29.18221 -28.81264 -27.84961 -25.67671 -25.11467 -24.20269 -22.81175 -22.42980 -21.65870 -20.09536 -19.45739 -17.78296 -17.05594 -16.86143 -16.48560 -16.08319 -15.73468 -15.16462 -14.98193 -14.87202 -14.48749 -14.43464 -14.00675 -13.63628 -13.58030 -13.47574 -12.89932 -12.83574 -12.68065 -12.39230 -12.30257 -12.19666 -12.07762 -11.79832 -11.63084 -11.57568 -11.35098 -11.19474 -11.14832 -11.03479 -10.78258 -10.55551 -10.30303 -10.17426 -9.95888 -9.88355 -9.54295 -9.05544 -9.00877 -8.59923 -8.24806 -7.74338 -6.13022 -4.13582 1.25407 2.00057 2.22868 2.49130 3.18256 3.25247 3.30835 3.42073 3.45143 3.47160 4.16969 4.25751 4.30756 4.33809 4.39379 4.51590 4.63899 4.80929 4.95327 4.99254 5.08876 5.11263 5.16834 5.19735 5.20890 5.29252 5.43964 5.50286 5.52708 5.61084 5.65582 5.74347 5.80744 5.87546 5.96121 6.04112 6.17961 6.32492 6.41241 6.60269 6.63874 6.77688 7.08530 7.13149 7.51348 7.58852 7.88316 8.50247 8.89164 9.14559 9.48391 10.98677 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.004868 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.855575 B = 5750.237921 C = 7439.595192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C 0.159 3.841 4 N -0.286 5.286 5 N -0.316 5.316 6 C 0.376 3.624 7 N -0.447 5.447 8 C 0.031 3.969 9 C 0.200 3.800 10 H 0.048 0.952 11 C -0.193 4.193 12 C -0.514 4.514 13 H 0.087 0.913 14 C 0.078 3.922 15 N -0.895 5.895 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.298 1.298 19 H -0.263 1.263 20 N -0.472 5.472 21 C 0.174 3.826 22 C -0.483 4.483 23 S 1.292 4.708 24 C -0.494 4.494 25 O -0.854 6.854 26 C -0.142 4.142 27 C -0.140 4.140 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.113 0.887 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.266 0.734 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.103 0.897 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.549 -18.860 -3.153 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.108 4.108 4 N -0.125 5.125 5 N -0.159 5.159 6 C 0.020 3.980 7 N -0.171 5.171 8 C -0.118 4.118 9 C 0.094 3.906 10 H 0.066 0.934 11 C -0.252 4.252 12 C -0.552 4.552 13 H 0.105 0.895 14 C -0.125 4.125 15 N -0.532 5.532 16 Si 0.711 3.289 17 H -0.205 1.205 18 H -0.226 1.226 19 H -0.188 1.188 20 N -0.167 5.167 21 C 0.049 3.951 22 C -0.579 4.579 23 S 1.490 4.510 24 C -0.652 4.652 25 O -0.850 6.850 26 C -0.181 4.181 27 C -0.178 4.178 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.057 0.943 34 H 0.132 0.868 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.123 0.877 46 H 0.117 0.883 47 H 0.121 0.879 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.992 -17.928 -1.808 18.129 hybrid contribution -0.288 -1.758 -1.035 2.061 sum -2.279 -19.686 -2.843 20.021 Atomic orbital electron populations 1.21750 0.93669 1.02071 1.02991 1.20169 0.96751 0.87128 1.03956 1.24457 1.05220 0.97663 0.83483 1.73955 1.16283 0.98227 1.24049 1.74779 1.19934 1.13670 1.07549 1.23108 1.00352 0.85585 0.88948 1.59043 1.16488 0.99848 1.41695 1.22793 0.86644 1.03641 0.98676 1.19809 0.96592 0.83303 0.90851 0.93395 1.22948 1.00710 1.01315 1.00199 1.20824 1.46235 0.88157 0.99975 0.89524 1.24791 0.94508 0.96010 0.97143 1.69848 1.48375 0.99237 1.35750 0.86950 0.79269 0.77277 0.85356 1.20457 1.22552 1.18796 1.46203 1.49727 1.12040 1.08708 1.20900 0.94458 0.99354 0.80365 1.29790 1.14056 0.99383 1.14717 1.72080 0.80090 1.06889 0.91904 1.27637 1.10362 1.07619 1.19541 1.93048 1.38260 1.69607 1.84051 1.22974 1.03483 0.92368 0.99248 1.23291 1.04021 0.97103 0.93364 0.91722 0.91484 0.92699 0.89735 0.88628 0.94279 0.86823 0.94249 0.93085 0.93654 0.91381 0.92448 0.88670 0.86592 0.86122 0.87411 0.89818 0.87696 0.88260 0.87854 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.04 -0.37 5.04 -27.88 -0.14 -0.51 16 3 C 0.16 2.20 6.39 -154.02 -0.98 1.22 16 4 N -0.29 -5.12 12.18 32.99 0.40 -4.71 16 5 N -0.32 -6.28 9.23 30.32 0.28 -6.00 16 6 C 0.38 6.63 6.53 -318.87 -2.08 4.55 16 7 N -0.45 -8.16 4.66 -176.08 -0.82 -8.98 16 8 C 0.03 0.49 8.33 60.06 0.50 0.99 16 9 C 0.20 4.46 1.65 -68.87 -0.11 4.34 16 10 H 0.05 1.18 7.11 -51.93 -0.37 0.81 16 11 C -0.19 -4.18 7.98 37.16 0.30 -3.88 16 12 C -0.51 -12.95 8.25 -34.44 -0.28 -13.24 16 13 H 0.09 2.27 7.58 -52.49 -0.40 1.88 16 14 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 15 N -0.89 -25.55 13.96 55.43 0.77 -24.77 16 16 Si 0.88 21.38 24.37 -169.99 -4.14 17.23 16 17 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 18 H -0.30 -7.28 7.11 56.52 0.40 -6.87 16 19 H -0.26 -6.35 6.53 56.52 0.37 -5.99 16 20 N -0.47 -6.49 2.68 -114.08 -0.31 -6.80 16 21 C 0.17 1.74 5.88 -4.04 -0.02 1.72 16 22 C -0.48 -4.77 2.29 -90.62 -0.21 -4.98 16 23 S 1.29 14.59 9.77 -107.50 -1.05 13.54 16 24 C -0.49 -4.52 10.74 101.05 1.09 -3.44 16 25 O -0.85 -13.82 17.81 -35.23 -0.63 -14.45 16 26 C -0.14 -1.20 9.78 -26.74 -0.26 -1.46 16 27 C -0.14 -1.41 8.91 -26.73 -0.24 -1.64 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.61 5.28 -51.93 -0.27 0.34 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.04 0.48 3.29 -24.96 -0.08 0.40 16 34 H 0.11 1.87 6.53 -51.93 -0.34 1.53 16 35 H 0.04 0.60 7.35 -51.93 -0.38 0.21 16 36 H 0.05 1.02 6.77 -51.93 -0.35 0.67 16 37 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16 38 H 0.07 1.45 5.65 -51.93 -0.29 1.16 16 39 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 40 H 0.10 0.73 7.85 -51.93 -0.41 0.33 16 41 H 0.12 1.10 7.58 -51.93 -0.39 0.71 16 42 H 0.12 0.91 7.83 -51.92 -0.41 0.51 16 43 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 45 H 0.10 0.65 8.03 -51.93 -0.42 0.23 16 46 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.10 1.19 8.04 -51.93 -0.42 0.77 16 48 H 0.12 1.12 3.41 -51.93 -0.18 0.95 16 LS Contribution 373.14 15.07 5.62 5.62 Total: -1.00 -34.30 373.14 -9.07 -43.37 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.02 Total: 1.13 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -2.18 Total: -15.17 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.33 Total: -51.27 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.63 Total: -14.45 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.14 Total: 17.23 kcal Atomic # 16 Polarization: 14.59 SS G_CDS: -1.05 Total: 13.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.30 -9.07 -43.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401437360.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.692 kcal (2) G-P(sol) polarization free energy of solvation -34.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds