Wall clock time and date at job start Sat Apr 11 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47349 * 2 1 4 4 N 1.30289 * 126.34531 * 90.02680 * 3 2 1 5 5 N 1.28529 * 110.04934 * 179.97438 * 4 3 2 6 6 C 1.31216 * 109.86318 * 359.97438 * 5 4 3 7 7 N 1.38581 * 126.47594 * 179.97438 * 6 5 4 8 8 C 1.46892 * 111.00316 * 114.20342 * 7 6 5 9 9 C 1.46904 * 110.99955 * 350.25012 * 7 6 5 10 10 H 1.09002 * 109.47122 * 310.00316 * 9 7 6 11 11 C 1.53004 * 109.46787 * 69.99912 * 9 7 6 12 12 C 1.50694 * 109.47270 * 190.00145 * 9 7 6 13 13 H 1.08000 * 120.00190 * 359.97438 * 12 9 7 14 14 C 1.37876 * 120.00324 * 180.02562 * 12 9 7 15 15 N 1.31519 * 119.99915 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 120.00505 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.46764 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47390 * 119.99589 * 16 14 12 19 19 H 1.48499 * 109.46917 * 240.00027 * 16 14 12 20 20 N 1.36452 * 107.05026 * 0.22674 * 6 5 4 21 21 C 1.46504 * 127.13225 * 179.77187 * 20 6 5 22 22 C 1.52999 * 109.46930 * 95.90184 * 21 20 6 23 23 S 1.81398 * 115.55133 * 185.88113 * 22 21 20 24 24 C 1.81400 * 102.99853 * 305.04978 * 23 22 21 25 25 O 1.42105 * 109.46954 * 61.43340 * 23 22 21 26 26 C 1.52997 * 117.50130 * 40.20730 * 22 21 20 27 27 C 1.53006 * 117.49894 * 331.54735 * 22 21 20 28 28 H 1.09005 * 109.47041 * 300.00261 * 1 2 3 29 29 H 1.09001 * 109.47165 * 59.99993 * 1 2 3 30 30 H 1.08999 * 109.47639 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47041 * 239.99739 * 2 1 3 32 32 H 1.09001 * 109.47165 * 120.00007 * 2 1 3 33 33 H 1.09001 * 109.47172 * 67.96413 * 8 7 6 34 34 H 1.09002 * 109.47615 * 187.96740 * 8 7 6 35 35 H 1.09003 * 109.47078 * 307.96901 * 8 7 6 36 36 H 1.08996 * 109.47334 * 60.00499 * 11 9 7 37 37 H 1.08999 * 109.46802 * 180.02562 * 11 9 7 38 38 H 1.08993 * 109.47150 * 299.99982 * 11 9 7 39 39 H 0.96996 * 120.00669 * 180.02562 * 15 14 12 40 40 H 1.09003 * 109.47165 * 215.89348 * 21 20 6 41 41 H 1.08999 * 109.47280 * 335.89578 * 21 20 6 42 42 H 1.08996 * 109.47491 * 65.16224 * 24 23 22 43 43 H 1.09004 * 109.47166 * 185.16823 * 24 23 22 44 44 H 1.09000 * 109.46667 * 305.16151 * 24 23 22 45 45 H 1.09003 * 117.49850 * 0.02562 * 26 22 21 46 46 H 1.09006 * 117.49769 * 145.02620 * 26 22 21 47 47 H 1.08999 * 117.49915 * 214.98741 * 27 22 21 48 48 H 1.08999 * 117.49372 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2902 2.1487 1.0494 5 7 2.7018 3.3116 0.6888 6 6 2.7294 3.3885 -0.6208 7 7 3.1172 4.4854 -1.3738 8 6 4.3422 4.1973 -2.1315 9 6 3.2899 5.6720 -0.5251 10 1 2.4088 5.8003 0.1037 11 6 4.5254 5.4910 0.3592 12 6 3.4684 6.8898 -1.3945 13 1 3.4552 6.7921 -2.4700 14 6 3.6494 8.1286 -0.8171 15 7 3.6659 8.2476 0.4926 16 14 3.8700 9.6384 -1.8948 17 1 3.8121 9.2390 -3.3239 18 1 2.7871 10.6133 -1.6086 19 1 5.1866 10.2627 -1.6087 20 7 2.2986 2.1862 -1.1013 21 6 2.1537 1.7957 -2.5059 22 6 3.4070 1.0437 -2.9580 23 16 3.4756 0.6267 -4.7221 24 6 1.9300 -0.2855 -4.9861 25 8 3.4581 1.8209 -5.4921 26 6 4.0300 0.0524 -1.9731 27 6 4.7257 1.3852 -2.2611 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.1277 3.4551 -2.9004 34 1 4.7030 5.1127 -2.6006 35 1 5.1049 3.8103 -1.4557 36 1 5.4065 5.3626 -0.2695 37 1 4.6533 6.3712 0.9892 38 1 4.3962 4.6102 0.9880 39 1 3.7929 9.1191 0.8990 40 1 1.2829 1.1492 -2.6154 41 1 2.0237 2.6873 -3.1194 42 1 1.0827 0.3818 -4.8283 43 1 1.9047 -0.6701 -6.0057 44 1 1.8739 -1.1164 -4.2829 45 1 3.5466 -0.0643 -1.0031 46 1 4.4814 -0.8502 -2.3852 47 1 5.6343 1.3589 -2.8626 48 1 4.7002 2.1458 -1.4809 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001401437364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:09 Heat of formation + Delta-G solvation = 103.987382 kcal Electronic energy + Delta-G solvation = -29826.117984 eV Core-core repulsion = 26046.877484 eV Total energy + Delta-G solvation = -3779.240500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.69243 -38.16267 -37.34397 -35.96143 -34.13023 -33.57017 -32.56728 -29.49569 -29.00507 -28.58531 -27.83591 -25.71854 -25.17737 -23.88335 -22.74771 -22.04394 -21.53672 -19.88345 -19.32391 -17.69533 -17.06288 -16.71313 -16.20221 -15.70500 -15.43406 -14.99601 -14.88484 -14.71147 -14.31450 -14.14868 -13.97704 -13.86683 -13.54264 -13.25027 -13.18217 -12.87044 -12.59833 -12.41932 -12.20818 -11.94482 -11.81985 -11.50543 -11.46837 -11.18200 -11.13222 -10.97763 -10.77535 -10.70802 -10.51226 -10.46324 -10.19310 -10.12178 -10.04213 -9.88109 -9.70040 -8.93813 -8.86951 -8.61981 -8.38514 -7.38125 -6.01503 -4.08166 1.21656 2.09389 2.26938 2.71213 3.06837 3.30058 3.37765 3.39036 3.42468 3.69322 4.30351 4.31148 4.37548 4.47814 4.50607 4.66032 4.77915 4.82544 4.88514 4.91694 5.10775 5.26251 5.29553 5.30109 5.31818 5.38631 5.56078 5.57825 5.62965 5.65665 5.72818 5.83547 5.99555 6.03124 6.04779 6.23059 6.37451 6.54728 6.82964 6.99803 7.11057 7.22336 7.48919 7.64917 7.78482 7.99826 8.29697 8.47909 8.94395 9.36374 9.56428 11.04859 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.004303 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.902122 B = 6506.008811 C = 8011.688269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.034 4.034 3 C 0.147 3.853 4 N -0.285 5.285 5 N -0.315 5.315 6 C 0.385 3.615 7 N -0.456 5.456 8 C 0.030 3.970 9 C 0.229 3.771 10 H 0.051 0.949 11 C -0.170 4.170 12 C -0.512 4.512 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.899 3.101 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.480 5.480 21 C 0.157 3.843 22 C -0.484 4.484 23 S 1.290 4.710 24 C -0.493 4.493 25 O -0.834 6.834 26 C -0.135 4.135 27 C -0.133 4.133 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.034 0.966 36 H 0.022 0.978 37 H 0.090 0.910 38 H 0.037 0.963 39 H 0.261 0.739 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.113 0.887 47 H 0.108 0.892 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 -25.188 -8.696 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.074 4.074 3 C -0.120 4.120 4 N -0.124 5.124 5 N -0.159 5.159 6 C 0.030 3.970 7 N -0.179 5.179 8 C -0.117 4.117 9 C 0.125 3.875 10 H 0.068 0.932 11 C -0.229 4.229 12 C -0.550 4.550 13 H 0.081 0.919 14 C -0.139 4.139 15 N -0.523 5.523 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 N -0.177 5.177 21 C 0.032 3.968 22 C -0.581 4.581 23 S 1.486 4.514 24 C -0.650 4.650 25 O -0.830 6.830 26 C -0.173 4.173 27 C -0.170 4.170 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.052 0.948 36 H 0.041 0.959 37 H 0.109 0.891 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.131 0.869 47 H 0.126 0.874 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.692 -24.231 -8.122 25.566 hybrid contribution -1.518 1.830 -1.006 2.582 sum -0.826 -22.401 -9.129 24.204 Atomic orbital electron populations 1.21758 0.94219 1.01949 1.02677 1.20048 0.96274 0.87069 1.03992 1.24430 1.07532 0.97187 0.82840 1.73955 1.15046 0.99186 1.24231 1.74901 1.21926 1.11901 1.07188 1.23277 0.98960 0.85289 0.89512 1.59240 1.32277 1.00415 1.25978 1.22738 0.89403 1.03004 0.96539 1.19374 0.95789 0.82551 0.89791 0.93161 1.22400 0.97789 1.02317 1.00430 1.21068 1.50030 0.90813 0.93135 0.91851 1.24886 0.95149 0.98809 0.95037 1.69931 1.49476 1.24004 1.08901 0.86432 0.77647 0.82673 0.80618 1.19734 1.20979 1.20991 1.46158 1.51937 1.12347 1.07281 1.21207 0.95453 1.00280 0.79899 1.29601 1.00172 1.11896 1.16409 1.70257 1.00695 0.99908 0.80571 1.27641 1.18101 1.10860 1.08433 1.93184 1.81577 1.47942 1.60270 1.23158 1.01584 0.93485 0.99024 1.23238 0.91991 0.99811 1.02006 0.91737 0.93074 0.91667 0.89879 0.88636 0.92324 0.88889 0.94793 0.95917 0.89148 0.94385 0.92856 0.89148 0.87910 0.89831 0.87423 0.86763 0.87204 0.86870 0.87370 0.87086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.89 37.15 0.37 -1.00 16 2 C -0.03 -0.34 5.34 -27.88 -0.15 -0.49 16 3 C 0.15 2.29 6.00 -154.02 -0.92 1.37 16 4 N -0.29 -5.75 12.18 32.99 0.40 -5.35 16 5 N -0.32 -7.29 9.37 30.31 0.28 -7.01 16 6 C 0.39 8.13 5.73 -318.88 -1.83 6.30 16 7 N -0.46 -10.38 4.70 -176.08 -0.83 -11.20 16 8 C 0.03 0.60 6.78 60.06 0.41 1.00 16 9 C 0.23 6.09 2.01 -68.86 -0.14 5.95 16 10 H 0.05 1.53 7.90 -51.93 -0.41 1.12 16 11 C -0.17 -4.40 8.20 37.16 0.30 -4.09 16 12 C -0.51 -14.31 7.79 -34.44 -0.27 -14.58 16 13 H 0.06 1.77 7.20 -52.49 -0.38 1.39 16 14 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 15 N -0.88 -25.87 11.32 55.43 0.63 -25.25 16 16 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 N -0.48 -7.81 1.89 -114.08 -0.22 -8.02 16 21 C 0.16 2.01 5.00 -4.04 -0.02 1.99 16 22 C -0.48 -4.56 2.08 -90.62 -0.19 -4.75 16 23 S 1.29 9.48 13.75 -107.50 -1.48 8.00 16 24 C -0.49 -2.67 10.32 101.05 1.04 -1.63 16 25 O -0.83 -12.35 18.14 -35.23 -0.64 -12.99 16 26 C -0.13 -0.98 9.00 -26.69 -0.24 -1.22 16 27 C -0.13 -1.41 7.47 -26.69 -0.20 -1.61 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.59 5.94 -51.93 -0.31 0.28 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.02 4.61 -51.93 -0.24 0.78 16 34 H 0.09 1.98 6.62 -51.93 -0.34 1.63 16 35 H 0.03 0.65 5.48 -51.93 -0.28 0.37 16 36 H 0.02 0.54 6.60 -51.93 -0.34 0.20 16 37 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 38 H 0.04 0.96 6.00 -51.93 -0.31 0.65 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.09 0.91 7.72 -51.93 -0.40 0.51 16 41 H 0.10 1.61 7.80 -51.93 -0.41 1.21 16 42 H 0.08 0.61 7.96 -51.93 -0.41 0.19 16 43 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.11 0.31 8.14 -51.92 -0.42 -0.11 16 45 H 0.11 0.96 3.93 -51.93 -0.20 0.76 16 46 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.11 1.65 3.63 -51.93 -0.19 1.46 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -38.41 374.03 -10.22 -48.63 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.06 Total: 1.90 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -1.93 Total: -11.06 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.27 Total: -56.83 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.64 Total: -12.99 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 9.48 SS G_CDS: -1.48 Total: 8.00 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -38.41 -10.22 -48.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001401437364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.621 kcal (2) G-P(sol) polarization free energy of solvation -38.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds