Wall clock time and date at job start Sat Apr 11 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 5 5 C 1.46903 * 110.99807 * 275.00039 * 4 2 1 6 6 C 1.50705 * 109.46848 * 180.02562 * 5 4 2 7 7 O 1.21274 * 119.99973 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99593 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99571 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47463 * 89.99723 * 9 8 6 11 11 H 1.08004 * 119.99891 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00039 * 179.97438 * 10 9 8 13 13 N 1.31504 * 120.00336 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99859 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46864 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47118 * 119.99830 * 14 12 10 17 17 H 1.48500 * 109.47238 * 240.00250 * 14 12 10 18 18 C 1.46501 * 120.00169 * 359.97438 * 8 6 5 19 19 C 1.53002 * 109.46595 * 90.00471 * 18 8 6 20 20 C 1.47203 * 109.46918 * 179.97438 * 19 18 8 21 21 N 6.96652 * 79.94928 * 52.04477 * 2 1 3 22 22 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 23 23 C 1.38369 * 119.84558 * 279.72377 * 22 2 1 24 24 C 1.37944 * 120.15066 * 179.76696 * 23 22 2 25 25 C 1.39630 * 119.84678 * 0.50274 * 24 23 22 26 26 C 1.43206 * 120.15036 * 179.76569 * 25 24 23 27 27 N 6.84440 * 109.47886 * 240.00186 * 2 1 3 28 28 C 1.39627 * 119.69845 * 359.75133 * 25 24 23 29 29 C 1.37940 * 119.84834 * 359.97438 * 28 25 24 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 32 32 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 33 33 H 1.00902 * 111.00121 * 38.95441 * 4 2 1 34 34 H 1.09001 * 109.47143 * 300.00154 * 5 4 2 35 35 H 1.08998 * 109.47112 * 60.00049 * 5 4 2 36 36 H 1.09005 * 109.47270 * 209.99401 * 9 8 6 37 37 H 1.09003 * 109.47498 * 329.99671 * 9 8 6 38 38 H 0.97001 * 120.00450 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.47128 * 210.00070 * 18 8 6 40 40 H 1.08993 * 109.47326 * 330.00736 * 18 8 6 41 41 H 1.08993 * 109.47330 * 299.99916 * 19 18 8 42 42 H 1.09006 * 109.46905 * 59.99899 * 19 18 8 43 43 H 1.07999 * 119.92245 * 0.02562 * 23 22 2 44 44 H 1.07997 * 120.07321 * 180.27720 * 24 23 22 45 45 H 1.08002 * 120.07594 * 179.97438 * 28 25 24 46 46 H 1.08009 * 119.92807 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5886 -0.5216 3.5557 7 8 2.8697 -1.6982 3.4696 8 7 2.7287 0.1205 4.7324 9 6 3.2212 -0.6028 5.9073 10 6 4.7241 -0.5062 5.9633 11 1 5.2589 0.0391 5.1997 12 6 5.4162 -1.1139 6.9892 13 7 4.7650 -1.7783 7.9187 14 14 7.2791 -0.9936 7.0589 15 1 7.7672 -0.1975 5.9042 16 1 7.6853 -0.3313 8.3245 17 1 7.8656 -2.3567 7.0031 18 6 2.3896 1.5419 4.8361 19 6 0.9168 1.6877 5.2241 20 6 0.5761 3.1159 5.3290 21 7 0.3143 4.2190 5.4087 22 6 2.0324 -0.7103 -1.2305 23 6 2.0708 -2.0931 -1.2600 24 6 2.5250 -2.7498 -2.3848 25 6 2.9563 -2.0157 -3.4915 26 6 3.4338 -2.6907 -4.6607 27 7 3.8124 -3.2261 -5.5883 28 6 2.9198 -0.6204 -3.4529 29 6 2.4580 0.0233 -2.3237 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.4496 -1.4980 1.4100 34 1 2.7589 1.0462 2.1182 35 1 1.0871 0.6162 2.5525 36 1 2.7951 -0.1636 6.8094 37 1 2.9267 -1.6501 5.8391 38 1 5.2519 -2.2056 8.6407 39 1 3.0139 2.0097 5.5974 40 1 2.5621 2.0277 3.8758 41 1 0.2925 1.2199 4.4629 42 1 0.7442 1.2019 6.1845 43 1 1.7406 -2.6596 -0.4018 44 1 2.5502 -3.8293 -2.4081 45 1 3.2524 -0.0465 -4.3053 46 1 2.4287 1.1026 -2.2927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271641622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:30 Heat of formation + Delta-G solvation = 48.720994 kcal Electronic energy + Delta-G solvation = -27842.799157 eV Core-core repulsion = 23925.718176 eV Total energy + Delta-G solvation = -3917.080982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09102 -39.32850 -37.31560 -36.88128 -36.14566 -35.22981 -32.97766 -32.15994 -31.35898 -30.88998 -29.73770 -27.83225 -25.89631 -24.57913 -24.04800 -23.10792 -22.40856 -21.16128 -19.17563 -18.71563 -17.75012 -16.89509 -16.55059 -16.40437 -15.75916 -15.53427 -15.20377 -14.86638 -14.76834 -14.48064 -14.40307 -14.16386 -14.08454 -13.85244 -13.72431 -13.46136 -13.33294 -12.98720 -12.86729 -12.68361 -12.51486 -12.47501 -12.35261 -12.14895 -11.93867 -11.81817 -11.69355 -11.37794 -11.29652 -11.19501 -11.01692 -10.87205 -10.65616 -10.20677 -9.70925 -9.29334 -9.10202 -9.02848 -8.49819 -8.49260 -7.87986 -6.10774 -4.15100 0.49493 1.08486 2.41162 2.66212 2.68362 2.74434 3.23878 3.27567 3.36292 3.39501 3.46662 3.60312 3.64009 3.94028 4.24661 4.40610 4.46344 4.55006 4.59170 4.81601 4.88836 4.89698 5.01644 5.06378 5.10042 5.18265 5.20256 5.25220 5.33420 5.38837 5.42988 5.48441 5.55108 5.69604 5.76498 5.78592 5.95063 6.01516 6.02836 6.23624 6.53149 6.70339 6.95946 7.22272 7.22796 7.32125 7.40128 7.51128 7.85653 8.15037 8.22118 8.81933 8.96211 9.50827 10.97381 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008948 B = 0.002677 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.455431 B =10455.595304 C =12803.102808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.117 3.883 3 H 0.092 0.908 4 N -0.664 5.664 5 C 0.038 3.962 6 C 0.506 3.494 7 O -0.518 6.518 8 N -0.598 5.598 9 C 0.246 3.754 10 C -0.527 4.527 11 H 0.059 0.941 12 C 0.062 3.938 13 N -0.894 5.894 14 Si 0.896 3.104 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.118 3.882 19 C -0.050 4.050 20 C 0.216 3.784 21 N -0.445 5.445 22 C -0.033 4.033 23 C -0.095 4.095 24 C -0.068 4.068 25 C -0.039 4.039 26 C 0.258 3.742 27 N -0.426 5.426 28 C -0.070 4.070 29 C -0.117 4.117 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.353 0.647 34 H 0.098 0.902 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.263 0.737 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.293 5.412 -16.083 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.007 3.993 3 H 0.110 0.890 4 N -0.296 5.296 5 C -0.094 4.094 6 C 0.292 3.708 7 O -0.393 6.393 8 N -0.331 5.331 9 C 0.127 3.873 10 C -0.566 4.566 11 H 0.077 0.923 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.009 4.009 19 C -0.091 4.091 20 C -0.102 4.102 21 N -0.122 5.122 22 C -0.034 4.034 23 C -0.114 4.114 24 C -0.089 4.089 25 C -0.043 4.043 26 C -0.057 4.057 27 N -0.101 5.101 28 C -0.091 4.091 29 C -0.136 4.136 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.174 0.826 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.135 0.865 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.148 0.852 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.236 5.532 -17.412 20.941 hybrid contribution 0.160 -0.024 0.775 0.791 sum -10.076 5.508 -16.637 20.215 Atomic orbital electron populations 1.22521 0.95784 1.02925 1.02718 1.20556 0.92911 0.97637 0.88235 0.88990 1.60191 1.58044 1.09096 1.02273 1.21987 1.00619 0.96229 0.90586 1.20196 0.79149 0.87732 0.83746 1.90703 1.49048 1.15947 1.83611 1.48215 1.64065 1.09007 1.11798 1.19343 0.94313 0.93095 0.80573 1.21448 0.91722 1.33746 1.09650 0.92302 1.24910 0.98684 0.94926 0.95470 1.69919 1.35716 1.34393 1.13281 0.86472 0.85377 0.77965 0.77794 1.19751 1.21037 1.20882 1.21295 0.92081 0.84436 1.03086 1.19906 0.99751 0.83330 1.06161 1.29136 0.93144 0.95041 0.92874 1.81239 1.09034 1.12665 1.09284 1.20041 0.95248 0.93891 0.94263 1.20941 0.98986 0.93988 0.97454 1.21195 0.95984 1.00179 0.91543 1.15997 1.05809 0.92719 0.89769 1.25799 0.93416 0.93456 0.93006 1.81251 1.09445 1.08417 1.11015 1.21079 0.97428 0.92078 0.98518 1.20919 0.99752 1.00246 0.92663 0.91814 0.91931 0.91601 0.82646 0.88381 0.92728 0.94783 0.93580 0.92733 0.88726 0.90713 0.87754 0.86474 0.84622 0.85040 0.85185 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 9.14 37.16 0.34 -0.69 16 2 C 0.12 0.84 2.79 -68.86 -0.19 0.65 16 3 H 0.09 0.59 7.65 -51.93 -0.40 0.20 16 4 N -0.66 -6.86 5.32 -109.21 -0.58 -7.44 16 5 C 0.04 0.41 4.52 -4.97 -0.02 0.38 16 6 C 0.51 8.36 7.71 -10.98 -0.08 8.27 16 7 O -0.52 -11.11 15.78 5.56 0.09 -11.02 16 8 N -0.60 -10.01 2.46 -175.06 -0.43 -10.44 16 9 C 0.25 5.54 5.16 -5.19 -0.03 5.51 16 10 C -0.53 -13.68 9.39 -34.44 -0.32 -14.00 16 11 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 14 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 C 0.12 1.39 5.17 -4.04 -0.02 1.37 16 19 C -0.05 -0.45 6.03 -29.52 -0.18 -0.63 16 20 C 0.22 2.34 15.44 -20.74 -0.32 2.02 16 21 N -0.44 -6.05 18.54 42.17 0.78 -5.27 16 22 C -0.03 -0.25 4.96 -104.53 -0.52 -0.77 16 23 C -0.10 -0.78 9.30 -39.64 -0.37 -1.15 16 24 C -0.07 -0.55 9.76 -39.17 -0.38 -0.93 16 25 C -0.04 -0.33 5.73 -106.93 -0.61 -0.94 16 26 C 0.26 2.63 15.33 -22.47 -0.34 2.29 16 27 N -0.43 -5.34 18.54 41.84 0.78 -4.56 16 28 C -0.07 -0.49 9.76 -39.17 -0.38 -0.87 16 29 C -0.12 -0.78 9.65 -39.64 -0.38 -1.16 16 30 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 31 H 0.06 0.34 7.45 -51.93 -0.39 -0.05 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.35 3.69 7.50 -39.29 -0.29 3.40 16 34 H 0.10 0.96 7.32 -51.93 -0.38 0.58 16 35 H 0.05 0.42 6.48 -51.93 -0.34 0.09 16 36 H 0.03 0.76 8.07 -51.93 -0.42 0.35 16 37 H 0.05 1.20 7.42 -51.93 -0.39 0.81 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 40 H 0.07 0.70 6.44 -51.93 -0.33 0.37 16 41 H 0.10 0.70 7.22 -51.93 -0.37 0.33 16 42 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.14 1.07 7.22 -52.49 -0.38 0.69 16 44 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.13 0.60 8.03 -52.48 -0.42 0.18 16 LS Contribution 405.59 15.07 6.11 6.11 Total: -1.00 -33.96 405.59 -7.64 -41.60 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.19 Total: -1.55 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -3.92 Total: 0.95 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 1.28 Total: -52.02 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.96 -7.64 -41.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271641622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.319 kcal (2) G-P(sol) polarization free energy of solvation -33.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds