Wall clock time and date at job start Sat Apr 11 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 5 5 C 1.46903 * 110.99807 * 275.00039 * 4 2 1 6 6 C 1.50705 * 109.46848 * 180.02562 * 5 4 2 7 7 O 1.21274 * 119.99973 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99593 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99571 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47463 * 89.99723 * 9 8 6 11 11 H 1.08004 * 119.99891 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00039 * 179.97438 * 10 9 8 13 13 N 1.31504 * 120.00336 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99859 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46864 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47118 * 119.99830 * 14 12 10 17 17 H 1.48500 * 109.47238 * 240.00250 * 14 12 10 18 18 C 1.46501 * 120.00169 * 359.97438 * 8 6 5 19 19 C 1.53002 * 109.46595 * 90.00471 * 18 8 6 20 20 C 1.47203 * 109.46918 * 179.97438 * 19 18 8 21 21 N 6.96652 * 79.94928 * 52.04477 * 2 1 3 22 22 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 23 23 C 1.38369 * 119.84558 * 279.72377 * 22 2 1 24 24 C 1.37944 * 120.15066 * 179.76696 * 23 22 2 25 25 C 1.39630 * 119.84678 * 0.50274 * 24 23 22 26 26 C 1.43206 * 120.15036 * 179.76569 * 25 24 23 27 27 N 6.84440 * 109.47886 * 240.00186 * 2 1 3 28 28 C 1.39627 * 119.69845 * 359.75133 * 25 24 23 29 29 C 1.37940 * 119.84834 * 359.97438 * 28 25 24 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 32 32 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 33 33 H 1.00902 * 111.00121 * 38.95441 * 4 2 1 34 34 H 1.09001 * 109.47143 * 300.00154 * 5 4 2 35 35 H 1.08998 * 109.47112 * 60.00049 * 5 4 2 36 36 H 1.09005 * 109.47270 * 209.99401 * 9 8 6 37 37 H 1.09003 * 109.47498 * 329.99671 * 9 8 6 38 38 H 0.97001 * 120.00450 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.47128 * 210.00070 * 18 8 6 40 40 H 1.08993 * 109.47326 * 330.00736 * 18 8 6 41 41 H 1.08993 * 109.47330 * 299.99916 * 19 18 8 42 42 H 1.09006 * 109.46905 * 59.99899 * 19 18 8 43 43 H 1.07999 * 119.92245 * 0.02562 * 23 22 2 44 44 H 1.07997 * 120.07321 * 180.27720 * 24 23 22 45 45 H 1.08002 * 120.07594 * 179.97438 * 28 25 24 46 46 H 1.08009 * 119.92807 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5886 -0.5216 3.5557 7 8 2.8697 -1.6982 3.4696 8 7 2.7287 0.1205 4.7324 9 6 3.2212 -0.6028 5.9073 10 6 4.7241 -0.5062 5.9633 11 1 5.2589 0.0391 5.1997 12 6 5.4162 -1.1139 6.9892 13 7 4.7650 -1.7783 7.9187 14 14 7.2791 -0.9936 7.0589 15 1 7.7672 -0.1975 5.9042 16 1 7.6853 -0.3313 8.3245 17 1 7.8656 -2.3567 7.0031 18 6 2.3896 1.5419 4.8361 19 6 0.9168 1.6877 5.2241 20 6 0.5761 3.1159 5.3290 21 7 0.3143 4.2190 5.4087 22 6 2.0324 -0.7103 -1.2305 23 6 2.0708 -2.0931 -1.2600 24 6 2.5250 -2.7498 -2.3848 25 6 2.9563 -2.0157 -3.4915 26 6 3.4338 -2.6907 -4.6607 27 7 3.8124 -3.2261 -5.5883 28 6 2.9198 -0.6204 -3.4529 29 6 2.4580 0.0233 -2.3237 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.4496 -1.4980 1.4100 34 1 2.7589 1.0462 2.1182 35 1 1.0871 0.6162 2.5525 36 1 2.7951 -0.1636 6.8094 37 1 2.9267 -1.6501 5.8391 38 1 5.2519 -2.2056 8.6407 39 1 3.0139 2.0097 5.5974 40 1 2.5621 2.0277 3.8758 41 1 0.2925 1.2199 4.4629 42 1 0.7442 1.2019 6.1845 43 1 1.7406 -2.6596 -0.4018 44 1 2.5502 -3.8293 -2.4081 45 1 3.2524 -0.0465 -4.3053 46 1 2.4287 1.1026 -2.2927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271641622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:29 Heat of formation + Delta-G solvation = 28.099574 kcal Electronic energy + Delta-G solvation = -27843.693369 eV Core-core repulsion = 23925.718176 eV Total energy + Delta-G solvation = -3917.975193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85654 -40.39387 -38.11489 -37.85138 -36.96668 -36.49581 -34.82196 -32.95496 -32.07340 -31.91462 -30.43057 -29.26689 -26.98572 -25.32698 -25.20589 -24.09658 -23.49054 -21.74747 -19.93701 -19.80157 -18.79399 -18.29934 -17.92147 -17.42457 -16.68568 -16.45613 -16.27204 -15.96400 -15.61366 -15.47358 -15.25847 -15.12450 -14.94268 -14.74669 -14.39439 -14.28597 -14.16067 -14.09578 -13.87028 -13.69425 -13.51660 -13.46442 -13.28845 -13.13602 -12.98272 -12.92552 -12.65398 -12.64732 -12.48643 -12.34245 -12.13672 -11.91028 -11.78511 -11.70342 -11.59045 -10.55548 -10.43405 -9.84514 -9.65200 -9.40079 -9.17566 -8.14357 -6.25696 -0.13086 0.53708 1.40900 1.44371 1.54056 1.61645 1.75534 1.89556 1.95899 2.01791 2.34029 2.47836 2.90638 2.96543 3.13930 3.18698 3.42097 3.87544 3.91303 4.01681 4.07184 4.13536 4.19304 4.36020 4.39639 4.45751 4.59244 4.62405 4.67864 4.70965 4.84928 4.91390 4.96850 5.04641 5.12707 5.16051 5.19900 5.36253 5.40361 5.42953 5.44966 5.65723 5.67990 5.93576 5.98140 6.16238 6.18642 6.44932 6.48433 6.66646 6.83397 6.92225 7.40505 7.65227 8.92106 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008948 B = 0.002677 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.455431 B =10455.595304 C =12803.102808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.121 3.879 3 H 0.110 0.890 4 N -0.685 5.685 5 C 0.052 3.948 6 C 0.499 3.501 7 O -0.578 6.578 8 N -0.600 5.600 9 C 0.260 3.740 10 C -0.534 4.534 11 H 0.052 0.948 12 C 0.010 3.990 13 N -0.927 5.927 14 Si 0.954 3.046 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.287 1.287 18 C 0.114 3.886 19 C -0.037 4.037 20 C 0.246 3.754 21 N -0.491 5.491 22 C -0.037 4.037 23 C -0.109 4.109 24 C -0.073 4.073 25 C -0.054 4.054 26 C 0.281 3.719 27 N -0.474 5.474 28 C -0.066 4.066 29 C -0.114 4.114 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.349 0.651 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.032 0.968 37 H 0.004 0.996 38 H 0.264 0.736 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.140 0.860 42 H 0.117 0.883 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.149 0.851 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.015 7.938 -17.187 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.012 3.988 3 H 0.128 0.872 4 N -0.318 5.318 5 C -0.079 4.079 6 C 0.288 3.712 7 O -0.457 6.457 8 N -0.332 5.332 9 C 0.139 3.861 10 C -0.573 4.573 11 H 0.071 0.929 12 C -0.189 4.189 13 N -0.567 5.567 14 Si 0.780 3.220 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.213 1.213 18 C -0.011 4.011 19 C -0.078 4.078 20 C -0.071 4.071 21 N -0.169 5.169 22 C -0.038 4.038 23 C -0.127 4.127 24 C -0.094 4.094 25 C -0.058 4.058 26 C -0.033 4.033 27 N -0.151 5.151 28 C -0.086 4.086 29 C -0.132 4.132 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.169 0.831 34 H 0.135 0.865 35 H 0.114 0.886 36 H 0.050 0.950 37 H 0.022 0.978 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.128 0.872 41 H 0.157 0.843 42 H 0.135 0.865 43 H 0.150 0.850 44 H 0.153 0.847 45 H 0.167 0.833 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.978 8.117 -18.534 23.020 hybrid contribution 0.358 -0.818 1.141 1.449 sum -10.620 7.299 -17.392 21.646 Atomic orbital electron populations 1.22476 0.94405 1.02915 1.03690 1.20626 0.93925 0.97863 0.86435 0.87237 1.60151 1.59087 1.09491 1.03064 1.21937 1.02748 0.95487 0.87749 1.21303 0.77790 0.87326 0.84830 1.90677 1.51576 1.18845 1.84590 1.48081 1.63832 1.10782 1.10472 1.18756 0.92717 0.91617 0.83013 1.21795 0.93620 1.32905 1.08985 0.92923 1.25689 1.02776 0.94911 0.95476 1.70018 1.37216 1.35485 1.13974 0.85565 0.80612 0.77652 0.78169 1.19204 1.20028 1.21307 1.21509 0.93568 0.81325 1.04707 1.19846 0.98242 0.82359 1.07369 1.29198 0.91776 0.94779 0.91354 1.81287 1.10603 1.14071 1.10981 1.20250 0.94926 0.93687 0.94980 1.21001 0.99686 0.94679 0.97359 1.21278 0.95958 1.00596 0.91558 1.16097 1.07029 0.93491 0.89165 1.26077 0.92168 0.92412 0.92673 1.81263 1.11373 1.09849 1.12569 1.21340 0.96507 0.91419 0.99349 1.21204 0.98658 1.01570 0.91807 0.92418 0.91028 0.90481 0.83103 0.86527 0.88607 0.94961 0.97836 0.92703 0.90243 0.87231 0.84277 0.86499 0.85040 0.84672 0.83343 0.82278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.14 71.98 0.66 -0.69 16 2 C 0.12 1.31 2.79 44.17 0.12 1.44 16 3 H 0.11 0.84 7.65 -2.39 -0.02 0.82 16 4 N -0.69 -12.46 5.32 -499.44 -2.66 -15.12 16 5 C 0.05 0.93 4.52 85.56 0.39 1.31 16 6 C 0.50 15.86 7.71 87.66 0.68 16.54 16 7 O -0.58 -25.24 15.78 -3.01 -0.05 -25.29 16 8 N -0.60 -19.44 2.46 -826.15 -2.03 -21.47 16 9 C 0.26 12.00 5.16 85.63 0.44 12.44 16 10 C -0.53 -28.09 9.39 25.60 0.24 -27.85 16 11 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 12 C 0.01 0.56 5.46 84.66 0.46 1.03 16 13 N -0.93 -53.00 13.29 21.45 0.28 -52.72 16 14 Si 0.95 43.23 29.54 68.60 2.03 45.25 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 18 C 0.11 2.37 5.17 86.38 0.45 2.82 16 19 C -0.04 -0.54 6.03 28.79 0.17 -0.37 16 20 C 0.25 4.59 15.44 89.44 1.38 5.97 16 21 N -0.49 -12.30 18.54 20.01 0.37 -11.93 16 22 C -0.04 -0.47 4.96 -19.80 -0.10 -0.57 16 23 C -0.11 -1.67 9.30 22.23 0.21 -1.46 16 24 C -0.07 -1.13 9.76 22.54 0.22 -0.91 16 25 C -0.05 -0.85 5.73 -21.36 -0.12 -0.97 16 26 C 0.28 5.66 15.33 88.33 1.35 7.01 16 27 N -0.47 -12.04 18.54 19.00 0.35 -11.68 16 28 C -0.07 -0.76 9.76 22.53 0.22 -0.54 16 29 C -0.11 -1.13 9.65 22.23 0.21 -0.92 16 30 H 0.06 0.53 8.13 -2.39 -0.02 0.51 16 31 H 0.07 0.44 7.45 -2.39 -0.02 0.42 16 32 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.35 6.85 7.50 -89.69 -0.67 6.17 16 34 H 0.12 1.70 7.32 -2.39 -0.02 1.69 16 35 H 0.10 0.94 6.48 -2.39 -0.02 0.92 16 36 H 0.03 1.48 8.07 -2.38 -0.02 1.46 16 37 H 0.00 0.19 7.42 -2.39 -0.02 0.17 16 38 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.08 1.94 8.07 -2.39 -0.02 1.92 16 40 H 0.11 1.56 6.44 -2.39 -0.02 1.55 16 41 H 0.14 1.15 7.22 -2.39 -0.02 1.13 16 42 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 43 H 0.13 2.07 7.22 -2.91 -0.02 2.05 16 44 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 45 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 46 H 0.16 0.69 8.03 -2.91 -0.02 0.67 16 Total: -1.00 -78.04 405.59 5.63 -72.41 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 0.35 Total: 6.27 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 6.98 Total: 14.27 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -3.68 Total: -112.91 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -78.04 5.63 -72.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271641622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.512 kcal (2) G-P(sol) polarization free energy of solvation -78.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds