Wall clock time and date at job start Sat Apr 11 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47312 * 2 1 4 4 C 1.53001 * 109.47155 * 120.00363 * 2 1 3 5 5 C 1.53005 * 109.47104 * 174.99568 * 4 2 1 6 6 H 1.08999 * 109.46839 * 55.00149 * 5 4 2 7 7 C 1.52998 * 109.47108 * 175.00121 * 5 4 2 8 8 N 1.46499 * 109.46837 * 295.00014 * 5 4 2 9 9 C 1.46501 * 120.00161 * 299.99589 * 8 5 4 10 10 C 1.34781 * 119.99652 * 120.00104 * 8 5 4 11 11 O 1.21277 * 119.99833 * 359.97438 * 10 8 5 12 12 C 1.50703 * 119.99885 * 179.97438 * 10 8 5 13 13 S 1.81001 * 109.47000 * 180.02562 * 12 10 8 14 14 C 1.76200 * 99.99813 * 180.02562 * 13 12 10 15 15 N 1.32394 * 126.25874 * 359.97384 * 14 13 12 16 16 N 1.28516 * 110.20034 * 180.02562 * 15 14 13 17 17 C 1.33095 * 109.75073 * 0.02562 * 16 15 14 18 18 C 1.39771 * 126.56547 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00111 * 188.22178 * 18 17 16 20 20 C 1.40084 * 120.00218 * 8.21795 * 18 17 16 21 21 N 1.30817 * 119.99946 * 191.23483 * 20 18 17 22 22 Si 1.86798 * 119.99751 * 11.23165 * 20 18 17 23 23 H 1.48506 * 109.46877 * 270.00124 * 22 20 18 24 24 H 1.48499 * 109.47207 * 29.99996 * 22 20 18 25 25 H 1.48496 * 109.47289 * 150.00071 * 22 20 18 26 26 N 1.36672 * 126.26147 * 180.30773 * 14 13 12 27 27 C 1.46501 * 127.14877 * 359.97438 * 26 14 13 28 28 H 1.09005 * 109.46417 * 299.99827 * 1 2 3 29 29 H 1.08998 * 109.47031 * 59.99717 * 1 2 3 30 30 H 1.08994 * 109.47086 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46851 * 239.99859 * 2 1 3 32 32 H 1.08999 * 109.46577 * 60.00640 * 3 2 1 33 33 H 1.08998 * 109.46773 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.46951 * 300.00432 * 3 2 1 35 35 H 1.09005 * 109.47191 * 54.99757 * 4 2 1 36 36 H 1.09000 * 109.47084 * 295.00032 * 4 2 1 37 37 H 1.08997 * 109.47248 * 180.02562 * 7 5 4 38 38 H 1.09004 * 109.46829 * 300.00166 * 7 5 4 39 39 H 1.09003 * 109.47557 * 59.99592 * 7 5 4 40 40 H 1.09000 * 109.46951 * 270.00049 * 9 8 5 41 41 H 1.08996 * 109.47085 * 30.00628 * 9 8 5 42 42 H 1.09005 * 109.46877 * 150.00549 * 9 8 5 43 43 H 1.09004 * 109.46463 * 60.00052 * 12 10 8 44 44 H 1.08994 * 109.47587 * 300.00415 * 12 10 8 45 45 H 0.96998 * 119.99838 * 354.77302 * 21 20 18 46 46 H 1.09004 * 109.46941 * 270.14226 * 27 26 14 47 47 H 1.09008 * 109.47284 * 30.13706 * 27 26 14 48 48 H 1.08993 * 109.47266 * 150.14108 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8312 1.1879 6 1 3.9955 0.1610 1.0527 7 6 4.0852 -1.4397 2.4916 8 7 3.9479 -1.6873 0.0624 9 6 3.4905 -3.0782 0.0113 10 6 4.7211 -1.1954 -0.9259 11 8 5.0993 -0.0439 -0.8837 12 6 5.1155 -2.0762 -2.0833 13 16 6.1466 -1.1339 -3.2345 14 6 6.4525 -2.3695 -4.4529 15 7 6.0040 -3.6150 -4.4347 16 7 6.4134 -4.2493 -5.4748 17 6 7.1562 -3.4432 -6.2297 18 6 7.7764 -3.7719 -7.4384 19 1 8.4640 -3.0778 -7.8988 20 6 7.5062 -5.0015 -8.0527 21 7 8.2404 -5.4063 -9.0570 22 14 6.0977 -6.0632 -7.4377 23 1 6.5947 -6.9817 -6.3819 24 1 5.0316 -5.1949 -6.8768 25 1 5.5472 -6.8571 -8.5655 26 7 7.2013 -2.2193 -5.5862 27 6 7.9036 -1.0123 -6.0291 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6768 1.9562 0.8901 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6054 -1.7199 1.2951 36 1 1.7517 -0.1585 2.1370 37 1 5.1716 -1.5175 2.4481 38 1 3.8002 -0.8027 3.3290 39 1 3.6546 -2.4318 2.6270 40 1 4.2183 -3.7185 0.5096 41 1 2.5274 -3.1627 0.5145 42 1 3.3856 -3.3881 -1.0285 43 1 4.2193 -2.4229 -2.5979 44 1 5.6763 -2.9341 -1.7125 45 1 8.9223 -4.8230 -9.4252 46 1 7.2388 -0.4127 -6.6510 47 1 8.2104 -0.4307 -5.1596 48 1 8.7840 -1.2952 -6.6060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279926968.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:32 Heat of formation + Delta-G solvation = -7.618915 kcal Electronic energy + Delta-G solvation = -27627.177518 eV Core-core repulsion = 23843.097406 eV Total energy + Delta-G solvation = -3784.080112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.82280 -41.26610 -38.32036 -36.01925 -35.91260 -35.38737 -33.14286 -31.98238 -30.39989 -28.39625 -28.19869 -27.68731 -27.53219 -27.19501 -23.34730 -23.02236 -22.10450 -21.06772 -20.17035 -19.93558 -18.59974 -18.31199 -17.21849 -17.05933 -16.84000 -16.72268 -16.04302 -15.80169 -15.54520 -15.25912 -14.88639 -14.83615 -14.51612 -14.43710 -14.27689 -14.17997 -13.69577 -13.68397 -13.55028 -13.29405 -13.18243 -13.06291 -13.03421 -12.87444 -12.82803 -12.55227 -12.23224 -11.98815 -11.75722 -11.57389 -11.54191 -11.44430 -11.37115 -11.33644 -11.01881 -10.87765 -10.54468 -10.34080 -9.69730 -9.48271 -8.69929 -6.83034 0.16849 0.99665 1.05920 1.42058 1.52204 1.63513 1.96438 1.98054 2.09949 2.22302 2.41171 3.05452 3.32938 3.74743 3.91896 3.93787 3.98128 4.01072 4.21970 4.31962 4.33012 4.34724 4.39365 4.41199 4.48246 4.55943 4.65892 4.71284 4.75725 4.76265 4.82443 4.84487 4.90751 4.99828 5.02385 5.08592 5.14557 5.25460 5.29587 5.38531 5.38624 5.44876 5.50133 5.60499 5.69648 6.01710 6.20944 6.41246 6.58822 6.97750 7.93167 8.16285 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.018113 B = 0.002623 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.444413 B =10671.323624 C =11087.852108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.116 4.116 5 C 0.128 3.872 6 H 0.084 0.916 7 C -0.155 4.155 8 N -0.594 5.594 9 C 0.063 3.937 10 C 0.537 3.463 11 O -0.558 6.558 12 C -0.129 4.129 13 S 0.048 5.952 14 C 0.068 3.932 15 N -0.305 5.305 16 N -0.438 5.438 17 C 0.324 3.676 18 C -0.511 4.511 19 H 0.081 0.919 20 C 0.042 3.958 21 N -0.824 5.824 22 Si 1.139 2.861 23 H -0.284 1.284 24 H -0.272 1.272 25 H -0.296 1.296 26 N -0.514 5.514 27 C 0.092 3.908 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.285 0.715 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.509 9.793 21.538 26.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.154 4.154 5 C 0.026 3.974 6 H 0.102 0.898 7 C -0.213 4.213 8 N -0.327 5.327 9 C -0.079 4.079 10 C 0.323 3.677 11 O -0.438 6.438 12 C -0.281 4.281 13 S 0.273 5.727 14 C -0.307 4.307 15 N -0.148 5.148 16 N -0.287 5.287 17 C 0.077 3.923 18 C -0.552 4.552 19 H 0.099 0.901 20 C -0.178 4.178 21 N -0.449 5.449 22 Si 0.966 3.034 23 H -0.211 1.211 24 H -0.199 1.199 25 H -0.225 1.225 26 N -0.213 5.213 27 C -0.050 4.050 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.114 0.886 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.341 8.861 21.869 27.106 hybrid contribution 1.736 1.268 -1.070 2.401 sum -11.606 10.129 20.798 25.882 Atomic orbital electron populations 1.21794 0.94159 1.02067 1.01901 1.21046 0.96296 0.95965 0.98163 1.21875 1.00717 0.96375 1.01592 1.22002 0.93059 1.01953 0.98408 1.21363 0.95981 0.94818 0.85256 0.89811 1.22094 1.00857 1.02429 0.95950 1.47835 1.49526 1.13813 1.21549 1.22107 1.01894 0.79966 1.03908 1.19635 0.78372 0.86772 0.82889 1.90691 1.55821 1.18973 1.78276 1.23564 1.04545 1.02649 0.97296 1.85279 1.64145 1.08255 1.14984 1.26689 1.06099 1.00600 0.97294 1.74166 1.22076 1.01646 1.16952 1.74072 1.24127 1.25676 1.04786 1.21735 0.94665 0.80966 0.94900 1.19362 1.26110 1.06037 1.03655 0.90102 1.27826 1.00397 0.96741 0.92861 1.70655 1.16143 1.37103 1.21016 0.82414 0.74059 0.74048 0.72899 1.21090 1.19868 1.22521 1.46183 1.43568 1.12336 1.19231 1.21895 0.97305 0.84084 1.01728 0.91667 0.93472 0.92133 0.93533 0.91545 0.93653 0.93807 0.89928 0.89015 0.93583 0.89808 0.90748 0.91044 0.88201 0.90803 0.85814 0.85832 0.90342 0.90290 0.88638 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 71.98 0.66 -1.15 16 2 C -0.10 -1.51 2.86 -10.79 -0.03 -1.54 16 3 C -0.15 -2.66 8.96 71.98 0.64 -2.02 16 4 C -0.12 -1.35 4.11 30.60 0.13 -1.22 16 5 C 0.13 2.00 2.51 44.99 0.11 2.12 16 6 H 0.08 1.74 5.10 -2.39 -0.01 1.73 16 7 C -0.16 -1.79 9.19 71.98 0.66 -1.13 16 8 N -0.59 -11.05 2.13 -822.58 -1.75 -12.80 16 9 C 0.06 0.83 9.30 127.77 1.19 2.02 16 10 C 0.54 14.02 7.69 87.66 0.67 14.69 16 11 O -0.56 -17.90 14.77 -3.02 -0.04 -17.95 16 12 C -0.13 -3.66 4.26 71.24 0.30 -3.35 16 13 S 0.05 1.67 20.92 -56.49 -1.18 0.49 16 14 C 0.07 3.01 8.09 179.18 1.45 4.46 16 15 N -0.31 -15.20 11.62 -56.17 -0.65 -15.86 16 16 N -0.44 -24.13 7.50 -55.02 -0.41 -24.54 16 17 C 0.32 17.32 7.21 133.23 0.96 18.28 16 18 C -0.51 -27.66 9.47 23.09 0.22 -27.44 16 19 H 0.08 4.27 7.46 -2.91 -0.02 4.25 16 20 C 0.04 2.26 5.52 85.29 0.47 2.73 16 21 N -0.82 -44.48 13.65 21.86 0.30 -44.18 16 22 Si 1.14 56.41 26.40 68.60 1.81 58.23 16 23 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 24 H -0.27 -14.15 6.25 99.48 0.62 -13.53 16 25 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 26 N -0.51 -23.55 3.26 -543.62 -1.77 -25.32 16 27 C 0.09 3.20 10.89 127.77 1.39 4.59 16 28 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.95 7.62 -2.38 -0.02 0.93 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.04 1.01 6.04 -2.39 -0.01 1.00 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.74 6.48 -2.38 -0.02 0.72 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.07 0.65 7.67 -2.39 -0.02 0.63 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.10 0.83 6.34 -2.39 -0.02 0.81 16 42 H 0.07 1.08 6.44 -2.38 -0.02 1.06 16 43 H 0.12 3.43 7.40 -2.39 -0.02 3.41 16 44 H 0.12 3.42 8.11 -2.40 -0.02 3.40 16 45 H 0.29 14.73 8.73 -92.71 -0.81 13.92 16 46 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.10 2.82 7.85 -2.38 -0.02 2.80 16 48 H 0.08 2.83 7.47 -2.39 -0.02 2.82 16 Total: -1.00 -70.32 394.10 5.95 -64.37 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.83 Total: 6.54 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 8.83 Total: 11.03 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -4.29 Total: -122.70 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.04 Total: -17.95 kcal Atomic # 14 Polarization: 56.41 SS G_CDS: 1.81 Total: 58.23 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.18 Total: 0.49 kcal Total: -70.32 5.95 -64.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279926968.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.752 kcal (2) G-P(sol) polarization free energy of solvation -70.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds