Wall clock time and date at job start Sat Apr 11 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08989 * 109.94217 * 2 1 4 4 C 1.50972 * 109.95264 * 121.20128 * 2 1 3 5 5 N 1.29727 * 128.67268 * 288.58353 * 4 2 1 6 6 N 1.28929 * 109.42724 * 179.63547 * 5 4 2 7 7 C 1.30821 * 109.73918 * 0.10532 * 6 5 4 8 8 N 1.34790 * 107.12190 * 0.14323 * 7 6 5 9 9 C 1.46224 * 128.60463 * 179.39397 * 8 7 6 10 10 C 1.53328 * 109.17682 * 161.84466 * 9 8 7 11 11 N 1.47253 * 109.29017 * 45.65975 * 10 9 8 12 12 C 1.34783 * 121.06058 * 116.39936 * 11 10 9 13 13 O 1.21284 * 119.99580 * 180.02562 * 12 11 10 14 14 C 1.50700 * 120.00235 * 0.08169 * 12 11 10 15 15 C 1.52993 * 109.47261 * 179.97438 * 14 12 11 16 16 H 1.09006 * 109.47403 * 55.00010 * 15 14 12 17 17 C 1.50695 * 109.47298 * 295.00120 * 15 14 12 18 18 H 1.08005 * 120.00104 * 325.84623 * 17 15 14 19 19 C 1.37875 * 120.00146 * 145.84731 * 17 15 14 20 20 N 1.31510 * 120.00198 * 6.11477 * 19 17 15 21 21 Si 1.86801 * 120.00034 * 186.11962 * 19 17 15 22 22 H 1.48499 * 109.47321 * 59.99956 * 21 19 17 23 23 H 1.48502 * 109.47367 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47372 * 299.99844 * 21 19 17 25 25 C 1.50697 * 109.47321 * 174.99631 * 15 14 12 26 26 C 1.38241 * 119.99393 * 63.46550 * 25 15 14 27 27 C 1.38239 * 119.99619 * 179.74113 * 26 25 15 28 28 C 1.38238 * 120.00036 * 0.53189 * 27 26 25 29 29 C 1.38237 * 119.99894 * 359.74370 * 28 27 26 30 30 C 1.38228 * 120.00440 * 243.73765 * 25 15 14 31 31 H 1.09000 * 109.47216 * 300.00250 * 1 2 3 32 32 H 1.08999 * 109.46973 * 59.99956 * 1 2 3 33 33 H 1.08996 * 109.47740 * 180.02562 * 1 2 3 34 34 H 1.08004 * 126.43992 * 180.17125 * 7 6 5 35 35 H 1.09001 * 109.51658 * 281.75162 * 9 8 7 36 36 H 1.08998 * 109.52146 * 41.87081 * 9 8 7 37 37 H 1.09007 * 109.51007 * 165.57296 * 10 9 8 38 38 H 1.08997 * 109.51206 * 285.71030 * 10 9 8 39 39 H 1.09004 * 109.46715 * 299.99874 * 14 12 11 40 40 H 1.08996 * 109.47096 * 59.99828 * 14 12 11 41 41 H 0.97006 * 120.00485 * 180.02562 * 20 19 17 42 42 H 1.07999 * 120.00313 * 0.02562 * 26 25 15 43 43 H 1.07997 * 119.99778 * 180.29415 * 27 26 25 44 44 H 1.08004 * 120.00222 * 179.76173 * 28 27 26 45 45 H 1.07996 * 120.00098 * 179.97438 * 29 28 27 46 46 H 1.08004 * 120.00230 * 0.02562 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9017 1.0245 0.0000 4 6 2.0452 -0.7352 1.2138 5 7 2.0184 -0.3658 2.4571 6 7 2.5542 -1.2825 3.1884 7 6 2.9472 -2.2762 2.4338 8 7 2.6395 -1.9543 1.1616 9 6 2.8816 -2.7233 -0.0582 10 6 1.9793 -2.1900 -1.1773 11 7 2.0334 -0.7184 -1.1861 12 6 2.5292 -0.0471 -2.2444 13 8 2.5650 1.1652 -2.2309 14 6 3.0378 -0.8026 -3.4451 15 6 3.5409 0.1890 -4.4960 16 1 4.2865 0.8461 -4.0481 17 6 2.3855 1.0126 -5.0034 18 1 1.4040 0.5702 -5.0903 19 6 2.5812 2.3309 -5.3567 20 7 3.7954 2.8359 -5.3661 21 14 1.1215 3.3997 -5.8220 22 1 0.1760 3.4712 -4.6792 23 1 1.5957 4.7664 -6.1576 24 1 0.4323 2.8115 -6.9986 25 6 4.1614 -0.5663 -5.6429 26 6 3.3857 -1.4122 -6.4136 27 6 3.9536 -2.1009 -7.4690 28 6 5.2996 -1.9524 -7.7470 29 6 6.0764 -1.1109 -6.9728 30 6 5.5072 -0.4178 -5.9209 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 3.4276 -3.1842 2.7675 35 1 3.9261 -2.6204 -0.3523 36 1 2.6561 -3.7742 0.1230 37 1 2.3259 -2.5720 -2.1376 38 1 0.9536 -2.5153 -1.0042 39 1 3.8548 -1.4578 -3.1426 40 1 2.2300 -1.4002 -3.8673 41 1 3.9331 3.7635 -5.6143 42 1 2.3350 -1.5313 -6.1939 43 1 3.3466 -2.7581 -8.0741 44 1 5.7441 -2.4935 -8.5693 45 1 7.1280 -0.9952 -7.1897 46 1 6.1143 0.2393 -5.3159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332572035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:43 Heat of formation + Delta-G solvation = 62.232253 kcal Electronic energy + Delta-G solvation = -29864.733480 eV Core-core repulsion = 25948.238391 eV Total energy + Delta-G solvation = -3916.495089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.33359 -41.02689 -39.78336 -37.99625 -35.93844 -35.46577 -33.80809 -33.06064 -31.46660 -31.04395 -30.38038 -29.65773 -27.52724 -25.48456 -25.09005 -24.20961 -23.43153 -23.10025 -21.83378 -20.96767 -19.52189 -18.72505 -18.38830 -17.90850 -17.65259 -17.13310 -16.81699 -16.47031 -16.32919 -15.88531 -15.62528 -15.43993 -15.25554 -14.94169 -14.53396 -14.39117 -13.96500 -13.79980 -13.71542 -13.59412 -13.42939 -13.24321 -13.09220 -12.98055 -12.80463 -12.63500 -12.51819 -12.46608 -12.34685 -11.80028 -11.67246 -11.49629 -11.29925 -11.10950 -10.93869 -10.66194 -10.37148 -10.35731 -9.86611 -9.50834 -9.16362 -8.03485 -6.05527 0.79743 0.81156 0.86796 1.36583 1.40793 1.41908 1.44835 1.76839 1.84770 1.88933 2.47212 3.03798 3.20946 3.37642 3.41485 3.68392 3.77672 4.00922 4.01906 4.12663 4.17543 4.27073 4.36865 4.38475 4.40315 4.47926 4.56528 4.60484 4.64226 4.71753 4.73643 4.74292 4.88725 4.96124 5.00777 5.01854 5.12891 5.21861 5.38805 5.43761 5.55522 5.66226 5.79951 5.87563 5.89020 5.98005 6.19181 6.37835 6.45548 6.49368 7.03432 7.40610 7.58377 7.64449 9.05905 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011461 B = 0.003805 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.536073 B = 7356.161056 C = 8988.568824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.229 3.771 3 H 0.087 0.913 4 C 0.169 3.831 5 N -0.327 5.327 6 N -0.352 5.352 7 C 0.176 3.824 8 N -0.466 5.466 9 C 0.083 3.917 10 C 0.085 3.915 11 N -0.627 5.627 12 C 0.520 3.480 13 O -0.548 6.548 14 C -0.109 4.109 15 C 0.081 3.919 16 H 0.020 0.980 17 C -0.483 4.483 18 H 0.052 0.948 19 C 0.025 3.975 20 N -0.918 5.918 21 Si 0.930 3.070 22 H -0.282 1.282 23 H -0.294 1.294 24 H -0.265 1.265 25 C -0.042 4.042 26 C -0.124 4.124 27 C -0.125 4.125 28 C -0.148 4.148 29 C -0.130 4.130 30 C -0.144 4.144 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.271 0.729 35 H 0.103 0.897 36 H 0.159 0.841 37 H 0.139 0.861 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.252 0.748 42 H 0.121 0.879 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.128 0.872 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 -21.179 5.029 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.122 3.878 3 H 0.105 0.895 4 C -0.102 4.102 5 N -0.167 5.167 6 N -0.191 5.191 7 C -0.112 4.112 8 N -0.157 5.157 9 C -0.038 4.038 10 C -0.037 4.037 11 N -0.364 5.364 12 C 0.310 3.690 13 O -0.422 6.422 14 C -0.149 4.149 15 C 0.062 3.938 16 H 0.038 0.962 17 C -0.521 4.521 18 H 0.070 0.930 19 C -0.174 4.174 20 N -0.558 5.558 21 Si 0.757 3.243 22 H -0.208 1.208 23 H -0.220 1.220 24 H -0.190 1.190 25 C -0.043 4.043 26 C -0.142 4.142 27 C -0.143 4.143 28 C -0.166 4.166 29 C -0.148 4.148 30 C -0.162 4.162 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.286 0.714 35 H 0.121 0.879 36 H 0.176 0.824 37 H 0.157 0.843 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.061 0.939 42 H 0.139 0.861 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.145 0.855 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.697 -19.533 6.191 20.561 hybrid contribution -0.191 1.055 -1.081 1.522 sum -1.888 -18.478 5.110 19.264 Atomic orbital electron populations 1.21939 0.91108 1.03626 1.03126 1.19338 0.95606 0.94881 0.77934 0.89493 1.24834 1.01210 0.87793 0.96371 1.73955 1.19540 1.22868 1.00314 1.74388 1.16293 1.00679 1.27724 1.27228 1.01621 1.02755 0.79577 1.46350 1.43540 1.15775 1.09992 1.22887 1.02695 0.98027 0.80222 1.22444 1.02034 0.78000 1.01242 1.48604 1.64007 1.07865 1.15898 1.21292 0.75978 0.87933 0.83823 1.90782 1.54767 1.16421 1.80241 1.21709 1.02019 0.98555 0.92572 1.17626 0.95272 0.91359 0.89512 0.96194 1.20978 0.94264 0.95285 1.41578 0.93025 1.25447 0.96688 0.99440 0.95818 1.70039 1.21648 1.14092 1.50029 0.86059 0.81226 0.78549 0.78443 1.20846 1.22037 1.18971 1.20503 0.92622 0.92960 0.98200 1.21047 0.99561 0.97366 0.96212 1.21376 0.95507 1.00087 0.97340 1.21252 0.94409 1.00318 1.00636 1.21259 1.00327 0.97531 0.95651 1.21082 0.95558 1.00151 0.99452 0.90649 0.91695 0.90310 0.71375 0.87899 0.82372 0.84348 0.87990 0.88299 0.87396 0.93928 0.86129 0.84116 0.84141 0.85451 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.44 71.98 0.68 -2.74 16 2 C 0.23 6.70 3.25 44.14 0.14 6.84 16 3 H 0.09 3.24 7.23 -2.39 -0.02 3.22 16 4 C 0.17 4.68 7.16 138.22 0.99 5.67 16 5 N -0.33 -10.88 12.21 -50.19 -0.61 -11.49 16 6 N -0.35 -10.26 12.23 -60.26 -0.74 -11.00 16 7 C 0.18 3.19 12.81 180.25 2.31 5.50 16 8 N -0.47 -8.74 3.11 -519.25 -1.62 -10.36 16 9 C 0.08 0.78 7.18 86.54 0.62 1.40 16 10 C 0.08 1.12 6.23 86.35 0.54 1.66 16 11 N -0.63 -16.52 2.64 -796.51 -2.10 -18.62 16 12 C 0.52 19.05 7.46 87.66 0.65 19.70 16 13 O -0.55 -27.41 14.52 -3.04 -0.04 -27.45 16 14 C -0.11 -3.57 3.31 29.85 0.10 -3.47 16 15 C 0.08 3.71 1.67 -12.29 -0.02 3.69 16 16 H 0.02 1.10 6.98 -2.38 -0.02 1.09 16 17 C -0.48 -25.13 6.37 25.60 0.16 -24.97 16 18 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 19 C 0.02 1.40 5.45 84.65 0.46 1.87 16 20 N -0.92 -55.69 12.87 21.45 0.28 -55.41 16 21 Si 0.93 45.83 29.54 68.60 2.03 47.85 16 22 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 24 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 25 C -0.04 -1.73 4.77 -19.87 -0.09 -1.82 16 26 C -0.12 -4.30 8.86 22.27 0.20 -4.10 16 27 C -0.13 -3.64 10.05 22.27 0.22 -3.42 16 28 C -0.15 -4.23 10.05 22.27 0.22 -4.01 16 29 C -0.13 -4.26 10.05 22.27 0.22 -4.04 16 30 C -0.14 -5.81 9.67 22.27 0.22 -5.60 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.54 7.49 -2.39 -0.02 1.52 16 34 H 0.27 1.54 8.06 -2.91 -0.02 1.51 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.16 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.14 1.27 5.97 -2.38 -0.01 1.26 16 38 H 0.10 1.00 7.50 -2.39 -0.02 0.99 16 39 H 0.10 2.57 7.90 -2.39 -0.02 2.55 16 40 H 0.11 2.93 7.40 -2.39 -0.02 2.92 16 41 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 42 H 0.12 3.91 7.76 -2.91 -0.02 3.89 16 43 H 0.14 3.11 8.06 -2.91 -0.02 3.08 16 44 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 45 H 0.13 3.53 8.06 -2.91 -0.02 3.50 16 46 H 0.09 3.92 7.95 -2.91 -0.02 3.90 16 Total: -1.00 -85.34 379.34 5.81 -79.54 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.99 Total: 14.78 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 7.63 Total: -7.83 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -4.79 Total: -106.89 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.04 Total: -27.45 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -85.34 5.81 -79.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332572035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.769 kcal (2) G-P(sol) polarization free energy of solvation -85.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds