Wall clock time and date at job start Sat Apr 11 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47317 * 2 1 4 4 N 1.46504 * 109.46941 * 240.00263 * 2 1 3 5 5 C 1.34776 * 120.00237 * 85.00008 * 4 2 1 6 6 O 1.21281 * 119.99461 * 0.02562 * 5 4 2 7 7 C 1.50692 * 120.00143 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.47145 * 180.02562 * 7 5 4 9 9 H 1.08993 * 109.47429 * 54.99336 * 8 7 5 10 10 C 1.50707 * 109.47038 * 294.99952 * 8 7 5 11 11 H 1.08005 * 119.99514 * 325.85204 * 10 8 7 12 12 C 1.37874 * 120.00369 * 145.85167 * 10 8 7 13 13 N 1.31512 * 119.99676 * 6.11714 * 12 10 8 14 14 Si 1.86802 * 120.00086 * 186.12008 * 12 10 8 15 15 H 1.48498 * 109.47269 * 90.00040 * 14 12 10 16 16 H 1.48499 * 109.46695 * 210.00070 * 14 12 10 17 17 H 1.48499 * 109.47063 * 329.99632 * 14 12 10 18 18 C 1.50698 * 109.47342 * 175.00156 * 8 7 5 19 19 C 1.38234 * 120.00262 * 63.45696 * 18 8 7 20 20 C 1.38233 * 119.99878 * 179.79022 * 19 18 8 21 21 C 1.38230 * 120.00229 * 0.43919 * 20 19 18 22 22 C 1.38237 * 119.99958 * 359.81268 * 21 20 19 23 23 C 1.38233 * 119.99736 * 243.72825 * 18 8 7 24 24 C 1.50708 * 109.47237 * 120.00463 * 2 1 3 25 25 N 1.31784 * 119.08145 * 74.72495 * 24 2 1 26 26 C 1.32547 * 121.00962 * 180.27755 * 25 24 2 27 27 C 1.38113 * 119.20020 * 0.02562 * 26 25 24 28 28 C 1.39625 * 118.33420 * 0.02562 * 27 26 25 29 29 N 1.38544 * 120.53638 * 180.02562 * 28 27 26 30 30 N 1.31742 * 119.08253 * 254.99654 * 24 2 1 31 31 H 1.08996 * 109.47317 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46580 * 299.99776 * 1 2 3 33 33 H 1.08997 * 109.47351 * 59.99307 * 1 2 3 34 34 H 0.97007 * 119.99843 * 265.00161 * 4 2 1 35 35 H 1.08994 * 109.47394 * 299.99946 * 7 5 4 36 36 H 1.08996 * 109.47357 * 60.00309 * 7 5 4 37 37 H 0.97002 * 119.99801 * 180.02562 * 13 12 10 38 38 H 1.08005 * 119.99597 * 359.97438 * 19 18 8 39 39 H 1.08007 * 119.99749 * 180.27053 * 20 19 18 40 40 H 1.07998 * 120.00261 * 179.83597 * 21 20 19 41 41 H 1.08001 * 119.99928 * 180.02562 * 22 21 20 42 42 H 1.07997 * 120.00197 * 359.97438 * 23 18 8 43 43 H 1.07997 * 120.40212 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.83731 * 179.97438 * 27 26 25 45 45 H 0.96996 * 120.00363 * 179.97438 * 29 28 27 46 46 H 0.97002 * 119.99412 * 359.97281 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8590 1.1586 -2.4114 7 6 2.6487 -0.7287 -3.5878 8 6 2.7009 0.2546 -4.7588 9 1 3.3029 1.1195 -4.4804 10 6 1.3035 0.7042 -5.0999 11 1 0.4749 0.0197 -4.9931 12 6 1.0827 1.9892 -5.5481 13 7 2.1014 2.7843 -5.7929 14 14 -0.6631 2.6010 -5.8076 15 1 -1.1629 3.2184 -4.5529 16 1 -0.6769 3.6111 -6.8960 17 1 -1.5372 1.4599 -6.1802 18 6 3.3171 -0.4221 -5.9560 19 6 2.6873 -1.5068 -6.5371 20 6 3.2504 -2.1248 -7.6379 21 6 4.4478 -1.6638 -8.1522 22 6 5.0802 -0.5823 -7.5679 23 6 4.5149 0.0384 -6.4697 24 6 2.0324 -0.7105 1.2305 25 7 1.9598 -2.0252 1.2854 26 6 2.3853 -2.6886 2.3511 27 6 2.9112 -1.9853 3.4171 28 6 2.9726 -0.5933 3.3269 29 7 3.4919 0.1574 4.3691 30 7 2.5268 0.0003 2.2234 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 2.2489 -1.6318 -1.1527 35 1 3.6478 -1.1213 -3.3987 36 1 1.9758 -1.5504 -3.8327 37 1 1.9461 3.6885 -6.1079 38 1 1.7538 -1.8696 -6.1327 39 1 2.7561 -2.9696 -8.0946 40 1 4.8890 -2.1483 -9.0106 41 1 6.0156 -0.2219 -7.9700 42 1 5.0090 0.8834 -6.0133 43 1 2.3216 -3.7662 2.3856 44 1 3.2653 -2.4989 4.2986 45 1 3.5312 1.1240 4.2981 46 1 3.8163 -0.2837 5.1698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597719234.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:48 Heat of formation + Delta-G solvation = 12.399633 kcal Electronic energy + Delta-G solvation = -28665.939207 eV Core-core repulsion = 24747.283213 eV Total energy + Delta-G solvation = -3918.655994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05295 -40.63203 -39.68960 -37.21310 -36.04514 -35.55582 -33.87711 -33.38117 -32.00022 -31.46874 -30.78185 -29.95738 -27.44221 -26.03637 -24.71192 -24.52531 -23.14405 -22.63562 -21.45193 -20.86958 -19.14508 -18.81075 -18.41318 -17.77239 -17.10727 -16.97951 -16.53013 -16.36163 -16.24340 -16.14154 -15.75693 -15.60881 -15.39098 -15.09447 -14.60883 -14.37818 -14.35005 -13.94342 -13.92052 -13.57723 -13.43452 -13.23164 -13.08297 -12.82996 -12.71652 -12.53285 -12.45822 -12.35686 -11.79815 -11.70450 -11.62650 -11.28016 -11.02432 -10.92015 -10.61749 -10.32279 -10.23025 -9.98728 -9.51258 -9.34238 -9.15873 -8.00491 -6.02495 -0.01309 0.43253 0.80855 0.87203 1.37575 1.43110 1.47141 1.99438 2.11380 2.49651 2.53021 2.88594 2.95316 3.21994 3.39983 3.53091 3.91325 4.08133 4.21059 4.28311 4.29519 4.34942 4.38809 4.44308 4.47857 4.58369 4.65442 4.67275 4.69788 4.77311 4.90753 4.96381 5.02952 5.15135 5.27468 5.39117 5.40900 5.55851 5.59901 5.68459 5.82632 5.86591 5.93308 5.98628 6.19823 6.21382 6.45403 6.50025 6.76474 6.80015 7.05130 7.31724 7.59676 7.62021 9.09466 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.002980 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.754659 B = 9394.174100 C =10789.709247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.216 3.784 3 H 0.078 0.922 4 N -0.717 5.717 5 C 0.515 3.485 6 O -0.551 6.551 7 C -0.114 4.114 8 C 0.084 3.916 9 H 0.023 0.977 10 C -0.483 4.483 11 H 0.048 0.952 12 C 0.024 3.976 13 N -0.918 5.918 14 Si 0.933 3.067 15 H -0.289 1.289 16 H -0.288 1.288 17 H -0.262 1.262 18 C -0.045 4.045 19 C -0.127 4.127 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.129 4.129 23 C -0.144 4.144 24 C 0.350 3.650 25 N -0.565 5.565 26 C 0.168 3.832 27 C -0.283 4.283 28 C 0.421 3.579 29 N -0.822 5.822 30 N -0.600 5.600 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.413 0.587 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.252 0.748 38 H 0.116 0.884 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.131 0.869 42 H 0.092 0.908 43 H 0.204 0.796 44 H 0.180 0.820 45 H 0.410 0.590 46 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 -15.161 18.020 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.108 3.892 3 H 0.096 0.904 4 N -0.373 5.373 5 C 0.303 3.697 6 O -0.426 6.426 7 C -0.154 4.154 8 C 0.065 3.935 9 H 0.041 0.959 10 C -0.521 4.521 11 H 0.067 0.933 12 C -0.174 4.174 13 N -0.558 5.558 14 Si 0.761 3.239 15 H -0.216 1.216 16 H -0.214 1.214 17 H -0.186 1.186 18 C -0.046 4.046 19 C -0.145 4.145 20 C -0.144 4.144 21 C -0.166 4.166 22 C -0.147 4.147 23 C -0.163 4.163 24 C 0.080 3.920 25 N -0.285 5.285 26 C 0.008 3.992 27 C -0.310 4.310 28 C 0.174 3.826 29 N -0.367 5.367 30 N -0.326 5.326 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.249 0.751 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.061 0.939 38 H 0.135 0.865 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.149 0.851 42 H 0.111 0.889 43 H 0.221 0.779 44 H 0.197 0.803 45 H 0.240 0.760 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 3.859 -13.704 17.159 22.296 hybrid contribution -0.394 0.778 0.964 1.300 sum 3.465 -12.926 18.123 22.528 Atomic orbital electron populations 1.21992 0.92936 1.03121 1.02180 1.19213 0.94860 0.95128 0.79963 0.90359 1.45923 1.68826 1.14485 1.08056 1.21059 0.76807 0.87166 0.84699 1.90743 1.49263 1.17951 1.84687 1.21670 1.01653 0.99532 0.92562 1.17610 0.95567 0.92278 0.88083 0.95857 1.20987 0.92409 0.96608 1.42099 0.93334 1.25462 0.99021 0.97466 0.95454 1.70058 1.31255 1.07411 1.47037 0.85942 0.82605 0.78502 0.76901 1.21591 1.21383 1.18617 1.20563 0.92379 0.93317 0.98296 1.21052 0.99650 0.96512 0.97322 1.21372 0.96280 1.00561 0.96171 1.21257 0.96418 0.97747 1.01152 1.21279 1.00568 0.96885 0.95939 1.21100 0.96734 0.99846 0.98592 1.22395 0.89784 0.87353 0.92503 1.68123 1.22721 1.08436 1.29188 1.23592 0.87177 1.02224 0.86224 1.22514 1.10943 0.92737 1.04856 1.18918 0.86930 0.89844 0.86858 1.42188 1.67108 1.10299 1.17082 1.67604 1.19577 1.42592 1.02873 0.90646 0.91069 0.93060 0.75053 0.89361 0.88333 0.93867 0.86548 0.84098 0.83868 0.85107 0.88938 0.77905 0.80257 0.75998 0.73889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 9.47 71.98 0.68 -3.73 16 2 C 0.22 7.14 2.97 44.25 0.13 7.27 16 3 H 0.08 3.06 7.55 -2.39 -0.02 3.04 16 4 N -0.72 -24.27 5.06 -446.10 -2.26 -26.53 16 5 C 0.52 22.13 7.54 87.65 0.66 22.79 16 6 O -0.55 -29.72 14.65 -3.03 -0.04 -29.77 16 7 C -0.11 -4.64 4.95 29.85 0.15 -4.49 16 8 C 0.08 4.25 1.67 -12.28 -0.02 4.23 16 9 H 0.02 1.39 6.98 -2.39 -0.02 1.37 16 10 C -0.48 -27.16 6.37 25.60 0.16 -27.00 16 11 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 12 C 0.02 1.46 5.45 84.65 0.46 1.92 16 13 N -0.92 -57.65 12.87 21.45 0.28 -57.38 16 14 Si 0.93 47.75 29.54 68.60 2.03 49.78 16 15 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 16 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 17 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 18 C -0.04 -2.06 4.77 -19.87 -0.09 -2.16 16 19 C -0.13 -5.08 8.86 22.27 0.20 -4.88 16 20 C -0.13 -4.18 10.05 22.27 0.22 -3.96 16 21 C -0.15 -4.70 10.05 22.27 0.22 -4.48 16 22 C -0.13 -4.64 10.05 22.27 0.22 -4.42 16 23 C -0.14 -6.37 9.67 22.27 0.22 -6.16 16 24 C 0.35 9.89 6.58 138.77 0.91 10.80 16 25 N -0.56 -13.35 9.60 -188.12 -1.81 -15.16 16 26 C 0.17 2.64 11.29 84.56 0.95 3.59 16 27 C -0.28 -3.80 10.04 22.58 0.23 -3.57 16 28 C 0.42 7.93 7.82 133.16 1.04 8.97 16 29 N -0.82 -8.99 9.06 -55.08 -0.50 -9.49 16 30 N -0.60 -16.21 10.35 -185.44 -1.92 -18.13 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.41 11.79 8.03 -92.70 -0.74 11.04 16 35 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.10 3.57 7.78 -2.39 -0.02 3.55 16 37 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.12 4.47 7.76 -2.91 -0.02 4.45 16 39 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 40 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 41 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 42 H 0.09 4.33 7.95 -2.91 -0.02 4.31 16 43 H 0.20 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 45 H 0.41 4.54 8.95 -92.71 -0.83 3.71 16 46 H 0.43 1.55 8.84 -92.71 -0.82 0.73 16 Total: -1.00 -81.04 392.86 0.77 -80.28 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: -1.36 Total: 31.67 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 6.35 Total: -5.27 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -6.20 Total: -126.68 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.04 Total: -29.77 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -81.04 0.77 -80.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597719234.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.677 kcal (2) G-P(sol) polarization free energy of solvation -81.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds