Wall clock time and date at job start Sat Apr 11 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47276 * 2 1 4 4 N 1.46510 * 109.47082 * 119.99811 * 2 1 3 5 5 C 1.34770 * 120.00018 * 274.99999 * 4 2 1 6 6 O 1.21289 * 120.00054 * 359.97438 * 5 4 2 7 7 C 1.50701 * 120.00106 * 179.97438 * 5 4 2 8 8 C 1.52996 * 109.47292 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.47432 * 304.99992 * 8 7 5 10 10 C 1.50700 * 109.47220 * 64.99998 * 8 7 5 11 11 H 1.08003 * 119.99804 * 31.91666 * 10 8 7 12 12 C 1.37878 * 120.00595 * 211.91833 * 10 8 7 13 13 N 1.31520 * 119.99366 * 5.85405 * 12 10 8 14 14 Si 1.86793 * 120.00404 * 185.85245 * 12 10 8 15 15 H 1.48498 * 109.47201 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46968 * 119.99834 * 14 12 10 17 17 H 1.48503 * 109.47325 * 239.99695 * 14 12 10 18 18 C 1.50703 * 109.47359 * 184.99816 * 8 7 5 19 19 C 1.38234 * 119.99596 * 118.32458 * 18 8 7 20 20 C 1.38239 * 119.99528 * 179.97438 * 19 18 8 21 21 C 1.38235 * 120.00141 * 359.97438 * 20 19 18 22 22 C 1.38235 * 119.99790 * 0.02562 * 21 20 19 23 23 C 1.38227 * 119.99708 * 298.35470 * 18 8 7 24 24 C 1.50701 * 109.47334 * 239.99869 * 2 1 3 25 25 N 1.31795 * 119.08190 * 285.00496 * 24 2 1 26 26 C 1.32549 * 121.00927 * 179.97438 * 25 24 2 27 27 C 1.38116 * 119.19896 * 359.97438 * 26 25 24 28 28 C 1.39621 * 118.33234 * 0.02562 * 27 26 25 29 29 N 1.38545 * 120.53004 * 180.02562 * 28 27 26 30 30 N 1.31741 * 119.08454 * 104.73198 * 24 2 1 31 31 H 1.09003 * 109.47285 * 59.99691 * 1 2 3 32 32 H 1.08998 * 109.47616 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47454 * 300.00237 * 1 2 3 34 34 H 0.96996 * 119.99498 * 94.99634 * 4 2 1 35 35 H 1.08996 * 109.46848 * 59.99936 * 7 5 4 36 36 H 1.09003 * 109.46849 * 300.00162 * 7 5 4 37 37 H 0.96997 * 119.99551 * 180.02562 * 13 12 10 38 38 H 1.07995 * 120.00278 * 0.02562 * 19 18 8 39 39 H 1.08003 * 119.99841 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.00012 * 179.72167 * 21 20 19 41 41 H 1.08004 * 119.99597 * 179.97438 * 22 21 20 42 42 H 1.07997 * 120.00638 * 359.97438 * 23 18 8 43 43 H 1.07994 * 120.39792 * 179.97438 * 26 25 24 44 44 H 1.07995 * 120.83121 * 180.02562 * 27 26 25 45 45 H 0.97002 * 120.00275 * 0.02562 * 29 28 27 46 46 H 0.97000 * 120.00109 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -0.0183 2.3572 6 8 1.8590 1.1587 2.4115 7 6 2.6488 -0.7288 3.5878 8 6 2.7010 0.2545 4.7588 9 1 3.3031 1.1195 4.4804 10 6 1.3036 0.7041 5.0999 11 1 0.4705 0.0315 4.9591 12 6 1.0887 1.9741 5.5918 13 7 2.0838 2.8317 5.6552 14 14 -0.6156 2.4766 6.1679 15 1 -1.5527 1.3379 5.9938 16 1 -0.5610 2.8572 7.6024 17 1 -1.0879 3.6341 5.3664 18 6 3.3172 -0.4222 5.9560 19 6 4.4931 0.0644 6.4957 20 6 5.0581 -0.5561 7.5943 21 6 4.4469 -1.6628 8.1534 22 6 3.2709 -2.1493 7.6136 23 6 2.7068 -1.5298 6.5140 24 6 2.0323 -0.7104 -1.2304 25 7 1.9647 -2.0256 -1.2833 26 6 2.3950 -2.6893 -2.3469 27 6 2.9207 -1.9858 -3.4129 28 6 2.9777 -0.5935 -3.3245 29 7 3.4956 0.1573 -4.3674 30 7 2.5218 0.0007 -2.2255 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.2489 -1.6318 1.1527 35 1 3.6479 -1.1213 3.3987 36 1 1.9758 -1.5506 3.8326 37 1 1.9327 3.7251 6.0016 38 1 4.9700 0.9297 6.0597 39 1 5.9766 -0.1757 8.0163 40 1 4.8906 -2.1502 9.0089 41 1 2.7936 -3.0142 8.0502 42 1 1.7882 -1.9100 6.0923 43 1 2.3353 -3.7671 -2.3795 44 1 3.2785 -2.4997 -4.2927 45 1 3.8220 -0.2838 -5.1673 46 1 3.5319 1.1241 -4.2976 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597719236.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:53 Heat of formation + Delta-G solvation = 36.116073 kcal Electronic energy + Delta-G solvation = -28652.570119 eV Core-core repulsion = 24734.942547 eV Total energy + Delta-G solvation = -3917.627572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.17810 -39.02218 -38.15990 -36.18688 -34.87795 -33.79834 -32.88104 -31.45833 -30.79095 -29.96900 -29.77712 -28.43326 -25.57001 -24.87825 -23.94369 -22.84979 -21.68447 -21.37589 -19.92998 -19.22862 -18.29802 -17.79528 -16.54847 -16.20037 -16.06254 -15.75024 -15.51666 -15.37257 -15.02764 -14.46667 -14.25470 -14.14046 -13.95883 -13.82002 -13.39884 -13.01501 -12.78220 -12.49033 -12.19845 -12.15666 -11.87336 -11.82619 -11.64941 -11.51477 -11.18954 -10.84016 -10.77001 -10.60971 -10.47776 -10.21088 -10.16584 -9.98852 -9.36251 -9.34226 -9.02237 -8.77045 -8.64487 -8.48634 -8.24485 -8.00594 -7.57294 -5.85209 -3.83675 0.82341 1.20352 2.32756 2.38677 2.95438 3.42304 3.49446 3.51910 3.58568 3.65752 3.82038 3.95578 4.31877 4.58330 4.65616 4.79603 4.95431 5.12525 5.33234 5.47075 5.49399 5.54930 5.69870 5.75781 5.77612 5.88267 5.93984 6.08669 6.19511 6.22805 6.30591 6.35811 6.44234 6.45566 6.60004 6.63682 6.84720 6.87127 6.97120 7.02967 7.09669 7.34972 7.35082 7.50875 7.59707 7.96695 7.99806 8.12049 8.13915 8.26486 8.46995 9.15970 9.21997 9.76846 11.24971 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012008 B = 0.002942 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.286512 B = 9513.827862 C =10848.293555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.216 3.784 3 H 0.110 0.890 4 N -0.738 5.738 5 C 0.514 3.486 6 O -0.491 6.491 7 C -0.120 4.120 8 C 0.077 3.923 9 H 0.075 0.925 10 C -0.489 4.489 11 H 0.051 0.949 12 C 0.078 3.922 13 N -0.879 5.879 14 Si 0.884 3.116 15 H -0.274 1.274 16 H -0.287 1.287 17 H -0.285 1.285 18 C -0.023 4.023 19 C -0.120 4.120 20 C -0.128 4.128 21 C -0.156 4.156 22 C -0.132 4.132 23 C -0.116 4.116 24 C 0.367 3.633 25 N -0.551 5.551 26 C 0.179 3.821 27 C -0.301 4.301 28 C 0.439 3.561 29 N -0.838 5.838 30 N -0.569 5.569 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.399 0.601 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.257 0.743 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.167 0.833 44 H 0.140 0.860 45 H 0.411 0.589 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.050 -11.443 -16.996 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.108 3.892 3 H 0.127 0.873 4 N -0.395 5.395 5 C 0.300 3.700 6 O -0.362 6.362 7 C -0.160 4.160 8 C 0.058 3.942 9 H 0.093 0.907 10 C -0.527 4.527 11 H 0.069 0.931 12 C -0.125 4.125 13 N -0.517 5.517 14 Si 0.712 3.288 15 H -0.199 1.199 16 H -0.213 1.213 17 H -0.212 1.212 18 C -0.023 4.023 19 C -0.139 4.139 20 C -0.147 4.147 21 C -0.174 4.174 22 C -0.150 4.150 23 C -0.134 4.134 24 C 0.097 3.903 25 N -0.270 5.270 26 C 0.017 3.983 27 C -0.329 4.329 28 C 0.193 3.807 29 N -0.382 5.382 30 N -0.293 5.293 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.234 0.766 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.184 0.816 44 H 0.158 0.842 45 H 0.241 0.759 46 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.549 -9.907 -16.082 19.220 hybrid contribution -0.370 -0.359 -0.833 0.980 sum 3.179 -10.266 -16.915 20.041 Atomic orbital electron populations 1.22121 0.93531 1.02658 1.03004 1.19341 0.94358 0.96319 0.79159 0.87268 1.46198 1.70397 1.14138 1.08789 1.20918 0.77605 0.87879 0.83555 1.90779 1.46279 1.15500 1.83602 1.21761 0.99744 1.00193 0.94308 1.17862 0.98022 0.92725 0.85569 0.90691 1.20714 0.90883 0.98156 1.42902 0.93058 1.24803 0.96116 0.96325 0.95296 1.69918 1.31018 1.05374 1.45356 0.86678 0.85403 0.78596 0.78117 1.19887 1.21317 1.21168 1.20785 0.91239 0.91829 0.98477 1.21112 0.96330 0.99629 0.96791 1.20988 0.99756 0.96701 0.97216 1.20792 0.97337 0.98470 1.00835 1.20980 0.96488 1.00129 0.97390 1.20964 0.99431 0.96647 0.96328 1.23033 0.87813 0.86606 0.92827 1.68183 1.21861 1.09386 1.27540 1.22917 0.87853 1.00596 0.86969 1.22097 1.13102 0.93690 1.04019 1.18522 0.86676 0.88473 0.87021 1.42188 1.68353 1.10169 1.17464 1.67738 1.18355 1.41459 1.01776 0.92339 0.91916 0.90223 0.76620 0.91785 0.90450 0.93297 0.86762 0.87670 0.87839 0.87666 0.86812 0.81621 0.84245 0.75898 0.76165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.47 37.15 0.35 -1.93 16 2 C 0.22 3.42 2.97 -69.08 -0.21 3.21 16 3 H 0.11 1.96 7.55 -51.93 -0.39 1.57 16 4 N -0.74 -12.20 5.06 -54.93 -0.28 -12.47 16 5 C 0.51 10.58 7.54 -10.99 -0.08 10.50 16 6 O -0.49 -12.41 14.65 5.55 0.08 -12.33 16 7 C -0.12 -2.38 4.92 -27.88 -0.14 -2.52 16 8 C 0.08 1.87 1.73 -92.92 -0.16 1.71 16 9 H 0.07 2.09 6.87 -51.93 -0.36 1.73 16 10 C -0.49 -13.25 6.44 -34.44 -0.22 -13.48 16 11 H 0.05 1.39 7.82 -52.48 -0.41 0.98 16 12 C 0.08 2.21 5.45 -17.82 -0.10 2.12 16 13 N -0.88 -26.14 12.81 55.43 0.71 -25.43 16 14 Si 0.88 22.38 29.54 -169.99 -5.02 17.36 16 15 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 C -0.02 -0.51 4.77 -104.63 -0.50 -1.01 16 19 C -0.12 -2.59 9.67 -39.58 -0.38 -2.97 16 20 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 21 C -0.16 -2.75 10.05 -39.58 -0.40 -3.15 16 22 C -0.13 -2.39 10.05 -39.58 -0.40 -2.78 16 23 C -0.12 -2.35 8.86 -39.58 -0.35 -2.70 16 24 C 0.37 5.20 6.58 -157.24 -1.03 4.16 16 25 N -0.55 -6.93 9.60 -10.81 -0.10 -7.04 16 26 C 0.18 1.68 11.29 -17.29 -0.20 1.49 16 27 C -0.30 -2.54 10.04 -39.11 -0.39 -2.93 16 28 C 0.44 4.54 7.82 -154.77 -1.21 3.33 16 29 N -0.84 -5.43 9.06 31.24 0.28 -5.14 16 30 N -0.57 -7.72 10.35 -9.96 -0.10 -7.82 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.40 5.80 8.02 -40.82 -0.33 5.47 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.42 7.67 -51.93 -0.40 1.02 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.11 2.49 7.95 -52.49 -0.42 2.07 16 39 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 42 H 0.11 2.22 7.70 -52.49 -0.40 1.82 16 43 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.41 1.34 8.84 -40.82 -0.36 0.98 16 46 H 0.41 2.50 8.95 -40.82 -0.37 2.14 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -34.50 392.62 -10.70 -45.20 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -6.37 Total: 11.54 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -5.81 Total: -9.77 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.51 Total: -57.91 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.50 -10.70 -45.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597719236.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.312 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds