Wall clock time and date at job start Sat Apr 11 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.47036 * 2 1 4 4 C 1.50699 * 109.46758 * 240.00153 * 2 1 3 5 5 O 1.21291 * 119.99868 * 248.89699 * 4 2 1 6 6 N 1.34778 * 120.00339 * 68.89268 * 4 2 1 7 7 C 1.39836 * 124.97728 * 4.69320 * 6 4 2 8 8 C 1.39633 * 129.33570 * 359.97438 * 7 6 4 9 9 C 1.37840 * 120.28748 * 180.02562 * 8 7 6 10 10 C 1.38299 * 120.22048 * 359.97438 * 9 8 7 11 11 C 1.38230 * 119.82758 * 359.97438 * 10 9 8 12 12 C 1.38182 * 120.14809 * 0.02562 * 11 10 9 13 13 C 1.51220 * 130.96946 * 179.97438 * 12 11 10 14 14 C 1.46533 * 124.98348 * 184.38176 * 6 4 2 15 15 H 1.09000 * 110.29637 * 61.07037 * 14 6 4 16 16 C 1.53001 * 110.29912 * 298.93593 * 14 6 4 17 17 N 1.46498 * 109.47016 * 120.00143 * 2 1 3 18 18 C 1.35306 * 125.87020 * 34.97995 * 17 2 1 19 19 C 1.35353 * 106.17451 * 180.02562 * 18 17 2 20 20 C 1.50704 * 126.75064 * 180.02562 * 19 18 17 21 21 C 1.50702 * 109.47017 * 125.00263 * 20 19 18 22 22 H 1.08000 * 120.00094 * 359.97438 * 21 20 19 23 23 C 1.37877 * 119.99589 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99401 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00267 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47042 * 90.00037 * 25 23 21 27 27 H 1.48503 * 109.47004 * 209.99903 * 25 23 21 28 28 H 1.48500 * 109.46871 * 329.99868 * 25 23 21 29 29 N 1.33766 * 106.49475 * 0.02562 * 19 18 17 30 30 N 1.28631 * 108.89070 * 359.97438 * 29 19 18 31 31 H 1.08996 * 109.47249 * 187.34020 * 1 2 3 32 32 H 1.09000 * 109.46893 * 307.33591 * 1 2 3 33 33 H 1.08999 * 109.47286 * 67.33143 * 1 2 3 34 34 H 1.07998 * 119.85935 * 359.97438 * 8 7 6 35 35 H 1.07994 * 119.89459 * 179.97438 * 9 8 7 36 36 H 1.07994 * 120.08824 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.92221 * 180.02562 * 11 10 9 38 38 H 1.08995 * 110.41357 * 298.78196 * 13 12 11 39 39 H 1.09010 * 110.41283 * 61.11105 * 13 12 11 40 40 H 1.09000 * 109.47266 * 59.99912 * 16 14 6 41 41 H 1.08995 * 109.47161 * 179.97438 * 16 14 6 42 42 H 1.08996 * 109.46753 * 299.99800 * 16 14 6 43 43 H 1.08000 * 126.91622 * 0.02562 * 18 17 2 44 44 H 1.08997 * 109.47236 * 245.00236 * 20 19 18 45 45 H 1.09004 * 109.46852 * 5.00178 * 20 19 18 46 46 H 0.97008 * 119.99859 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5910 -1.7819 -1.1265 6 7 1.8606 -0.1551 -2.4465 7 6 1.3175 1.1122 -2.6796 8 6 0.8477 2.0559 -1.7640 9 6 0.3439 3.2610 -2.2043 10 6 0.3003 3.5446 -3.5572 11 6 0.7645 2.6158 -4.4697 12 6 1.2705 1.4065 -4.0327 13 6 1.8336 0.2318 -4.8006 14 6 2.2217 -0.7882 -3.7177 15 1 1.6609 -1.7132 -3.8521 16 6 3.7254 -1.0665 -3.7639 17 7 2.0184 -0.6906 1.1961 18 6 1.4356 -1.7585 1.7885 19 6 2.2125 -2.0701 2.8522 20 6 1.9878 -3.1897 3.8357 21 6 3.2172 -4.0591 3.8965 22 1 4.0752 -3.8247 3.2839 23 6 3.2465 -5.1538 4.7342 24 7 4.3192 -5.9129 4.7869 25 14 1.7621 -5.5597 5.7932 26 1 0.8545 -6.4672 5.0464 27 1 2.2121 -6.2268 7.0413 28 1 1.0399 -4.3076 6.1338 29 7 3.2188 -1.1889 2.8587 30 7 3.0751 -0.3852 1.8647 31 1 -0.3633 -1.0192 0.1313 32 1 -0.3633 0.6233 0.8171 33 1 -0.3634 0.3961 -0.9483 34 1 0.8786 1.8404 -0.7061 35 1 -0.0182 3.9861 -1.4906 36 1 -0.0953 4.4892 -3.8999 37 1 0.7316 2.8359 -5.5265 38 1 1.0775 -0.1854 -5.4656 39 1 2.7130 0.5353 -5.3689 40 1 3.9971 -1.7325 -2.9449 41 1 3.9788 -1.5373 -4.7138 42 1 4.2716 -0.1284 -3.6658 43 1 0.5324 -2.2611 1.4756 44 1 1.7890 -2.7719 4.8226 45 1 1.1348 -3.7883 3.5160 46 1 4.3400 -6.6829 5.3766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603171053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:56 Heat of formation + Delta-G solvation = 122.268045 kcal Electronic energy + Delta-G solvation = -29479.752376 eV Core-core repulsion = 25565.860634 eV Total energy + Delta-G solvation = -3913.891742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.78764 -41.79664 -39.23100 -37.16268 -35.64573 -33.70466 -33.03154 -31.40832 -31.35145 -30.38177 -30.11790 -28.12056 -26.89937 -25.59539 -23.91359 -23.08073 -22.52797 -22.09408 -21.08124 -20.24084 -19.97026 -18.07165 -17.25446 -17.07804 -16.63739 -16.30818 -15.92050 -15.58081 -15.05016 -14.92288 -14.57191 -14.41830 -14.28837 -13.79139 -13.64361 -13.36318 -13.26680 -13.13036 -12.96710 -12.80946 -12.67471 -12.33808 -12.23026 -12.08393 -12.01975 -11.96155 -11.50687 -11.29244 -11.09678 -10.72613 -10.65685 -10.56061 -10.40147 -10.05276 -9.83319 -9.41808 -9.28743 -9.25883 -8.48423 -8.26648 -8.21941 -5.93733 -3.91390 0.75135 0.85124 1.79235 2.12017 2.34254 2.65436 3.28119 3.35401 3.42182 3.43701 3.46258 3.63436 3.95314 4.09863 4.16666 4.24978 4.46331 4.51231 4.53175 4.59571 4.77109 4.78951 4.92864 4.95335 4.98435 5.09206 5.15192 5.18641 5.28631 5.37371 5.37639 5.49410 5.51832 5.57179 5.69751 5.70714 5.86303 5.94217 5.97524 6.02940 6.06880 6.19244 6.42464 6.87242 6.89207 7.05479 7.12602 7.25874 7.50344 7.78452 8.64168 9.15107 9.23828 9.65005 11.19963 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020600 B = 0.002679 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.867712 B =10450.851456 C =11195.400030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.129 3.871 3 H 0.140 0.860 4 C 0.515 3.485 5 O -0.477 6.477 6 N -0.547 5.547 7 C 0.145 3.855 8 C -0.170 4.170 9 C -0.082 4.082 10 C -0.142 4.142 11 C -0.072 4.072 12 C -0.132 4.132 13 C -0.084 4.084 14 C 0.136 3.864 15 H 0.093 0.907 16 C -0.167 4.167 17 N -0.293 5.293 18 C -0.062 4.062 19 C 0.040 3.960 20 C 0.060 3.940 21 C -0.505 4.505 22 H 0.076 0.924 23 C 0.067 3.933 24 N -0.901 5.901 25 Si 0.877 3.123 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.264 1.264 29 N -0.245 5.245 30 N -0.102 5.102 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.180 0.820 44 H 0.038 0.962 45 H 0.030 0.970 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.652 20.202 -23.693 33.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.022 3.978 3 H 0.158 0.842 4 C 0.301 3.699 5 O -0.348 6.348 6 N -0.272 5.272 7 C 0.049 3.951 8 C -0.190 4.190 9 C -0.101 4.101 10 C -0.161 4.161 11 C -0.090 4.090 12 C -0.135 4.135 13 C -0.121 4.121 14 C 0.034 3.966 15 H 0.111 0.889 16 C -0.225 4.225 17 N -0.088 5.088 18 C -0.210 4.210 19 C -0.096 4.096 20 C 0.021 3.979 21 C -0.543 4.543 22 H 0.094 0.906 23 C -0.134 4.134 24 N -0.540 5.540 25 Si 0.704 3.296 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.189 1.189 29 N -0.112 5.112 30 N -0.080 5.080 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.197 0.803 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.983 20.215 -23.311 33.101 hybrid contribution -1.533 -1.053 0.244 1.876 sum -13.517 19.163 -23.067 32.894 Atomic orbital electron populations 1.22410 0.89594 1.05587 1.05368 1.21623 0.97411 0.97677 0.81127 0.84242 1.20589 0.79701 0.86217 0.83358 1.90878 1.38341 1.20522 1.85023 1.46032 1.59127 1.15305 1.06716 1.18406 0.96217 0.85749 0.94743 1.21221 1.04168 0.94092 0.99524 1.20916 0.97534 0.95512 0.96108 1.21064 1.02207 0.99802 0.93061 1.20443 0.96963 0.91606 1.00027 1.20006 1.04038 0.96654 0.92786 1.21259 1.01798 0.92081 0.96939 1.21711 0.97702 0.96632 0.80551 0.88863 1.22211 0.93373 1.03041 1.03902 1.46693 1.19078 1.22960 1.20099 1.23145 1.04360 0.94692 0.98826 1.22444 0.91113 0.98186 0.97867 1.18152 0.98475 0.89350 0.91881 1.20925 0.99778 1.08843 1.24755 0.90555 1.24977 0.95933 0.95906 0.96574 1.69913 1.28185 1.16959 1.38955 0.86827 0.83472 0.78931 0.80386 1.20266 1.21256 1.18872 1.75064 1.20474 1.03612 1.12094 1.78245 1.03543 1.22751 1.03499 0.89933 0.89145 0.88604 0.84525 0.85041 0.85394 0.85543 0.88866 0.88704 0.90285 0.90679 0.92043 0.80329 0.94388 0.95153 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 7.64 37.16 0.28 -1.19 16 2 C 0.13 1.61 2.74 -69.08 -0.19 1.42 16 3 H 0.14 1.50 5.72 -51.93 -0.30 1.20 16 4 C 0.51 7.21 6.95 -10.99 -0.08 7.14 16 5 O -0.48 -8.91 15.11 5.55 0.08 -8.82 16 6 N -0.55 -5.89 2.89 -105.85 -0.31 -6.19 16 7 C 0.14 1.27 6.02 -83.57 -0.50 0.77 16 8 C -0.17 -1.26 7.27 -39.21 -0.28 -1.54 16 9 C -0.08 -0.48 10.02 -39.70 -0.40 -0.88 16 10 C -0.14 -0.76 10.06 -39.56 -0.40 -1.16 16 11 C -0.07 -0.41 10.04 -39.60 -0.40 -0.81 16 12 C -0.13 -0.96 6.23 -104.27 -0.65 -1.61 16 13 C -0.08 -0.51 6.58 -27.25 -0.18 -0.69 16 14 C 0.14 1.22 3.67 -67.53 -0.25 0.98 16 15 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 16 C -0.17 -1.63 9.06 37.16 0.34 -1.30 16 17 N -0.29 -5.23 2.80 -55.89 -0.16 -5.38 16 18 C -0.06 -1.18 10.45 -17.05 -0.18 -1.36 16 19 C 0.04 0.95 6.44 -82.78 -0.53 0.42 16 20 C 0.06 1.53 4.62 -29.03 -0.13 1.40 16 21 C -0.50 -15.36 9.64 -34.44 -0.33 -15.69 16 22 H 0.08 2.62 7.98 -52.49 -0.42 2.20 16 23 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 24 N -0.90 -28.94 13.96 55.43 0.77 -28.16 16 25 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 29 N -0.24 -6.11 12.40 33.29 0.41 -5.69 16 30 N -0.10 -2.21 13.17 60.35 0.79 -1.42 16 31 H 0.08 0.74 6.80 -51.93 -0.35 0.39 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.66 5.45 -51.93 -0.28 0.38 16 34 H 0.14 0.94 3.44 -52.49 -0.18 0.76 16 35 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 36 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 37 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.47 7.71 -51.92 -0.40 0.07 16 40 H 0.08 1.05 6.63 -51.93 -0.34 0.71 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.18 2.73 7.13 -52.49 -0.37 2.35 16 44 H 0.04 0.95 7.20 -51.93 -0.37 0.58 16 45 H 0.03 0.71 7.55 -51.93 -0.39 0.32 16 46 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -39.06 370.23 -7.43 -46.49 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -5.97 Total: -1.41 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -3.98 Total: -12.18 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 1.52 Total: -46.86 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.06 -7.43 -46.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603171053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.757 kcal (2) G-P(sol) polarization free energy of solvation -39.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds