Wall clock time and date at job start Sat Apr 11 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47741 * 2 1 4 4 C 1.50709 * 109.46792 * 240.00386 * 2 1 3 5 5 C 1.38256 * 120.02933 * 299.99909 * 4 2 1 6 6 C 1.38104 * 119.92742 * 179.97438 * 5 4 2 7 7 C 1.38495 * 120.21843 * 0.02562 * 6 5 4 8 8 C 1.38216 * 119.85241 * 359.97438 * 7 6 5 9 9 C 1.38104 * 120.03093 * 119.96090 * 4 2 1 10 10 C 1.51367 * 109.75788 * 179.97438 * 8 7 6 11 11 C 1.54347 * 105.17417 * 342.82277 * 10 8 7 12 12 C 1.51680 * 130.30753 * 179.79079 * 7 6 5 13 13 N 1.46496 * 109.47056 * 120.00867 * 2 1 3 14 14 C 1.35309 * 125.87308 * 34.99522 * 13 2 1 15 15 C 1.35358 * 106.17636 * 180.02562 * 14 13 2 16 16 C 1.50700 * 126.74768 * 179.97438 * 15 14 13 17 17 N 1.46493 * 109.47307 * 94.99889 * 16 15 14 18 18 C 1.34777 * 120.00208 * 179.97438 * 17 16 15 19 19 O 1.21693 * 120.00116 * 359.97438 * 18 17 16 20 20 C 1.46376 * 120.00426 * 180.02562 * 18 17 16 21 21 H 1.07999 * 119.99504 * 359.97438 * 20 18 17 22 22 C 1.40040 * 120.00140 * 180.02562 * 20 18 17 23 23 N 1.30675 * 120.00364 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00086 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47321 * 89.99406 * 24 22 20 26 26 H 1.48499 * 109.47541 * 209.99642 * 24 22 20 27 27 H 1.48504 * 109.47217 * 329.99747 * 24 22 20 28 28 N 1.33770 * 106.49477 * 359.97438 * 15 14 13 29 29 N 1.28635 * 108.88738 * 359.73363 * 28 15 14 30 30 H 1.08997 * 109.46910 * 299.99667 * 1 2 3 31 31 H 1.08998 * 109.47038 * 59.99343 * 1 2 3 32 32 H 1.09001 * 109.47169 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.03580 * 359.95523 * 5 4 2 34 34 H 1.08004 * 119.89079 * 180.02562 * 6 5 4 35 35 H 1.07995 * 119.89182 * 0.06445 * 9 4 2 36 36 H 1.08994 * 110.30444 * 223.89683 * 10 8 7 37 37 H 1.09000 * 110.30530 * 101.74809 * 10 8 7 38 38 H 1.09002 * 110.82432 * 144.56674 * 11 10 8 39 39 H 1.09005 * 110.82182 * 267.92131 * 11 10 8 40 40 H 1.08998 * 110.25544 * 78.29277 * 12 7 6 41 41 H 1.09000 * 110.49386 * 316.04090 * 12 7 6 42 42 H 1.07999 * 126.91211 * 359.97438 * 14 13 2 43 43 H 1.09000 * 109.46608 * 214.99574 * 16 15 14 44 44 H 1.09004 * 109.47123 * 334.99315 * 16 15 14 45 45 H 0.97001 * 119.99911 * 359.97438 * 17 16 15 46 46 H 0.97000 * 120.00135 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 1.6986 -2.0340 -1.4501 6 6 2.1596 -2.6828 -2.5787 7 6 2.9560 -2.0120 -3.4919 8 6 3.2895 -0.6887 -3.2725 9 6 2.8256 -0.0396 -2.1405 10 6 4.1606 -0.1863 -4.4038 11 6 4.6815 -1.4572 -5.1078 12 6 3.5830 -2.4931 -4.7866 13 7 2.0183 -0.6908 1.1960 14 6 1.4358 -1.7589 1.7881 15 6 2.2126 -2.0706 2.8519 16 6 1.9874 -3.1897 3.8357 17 7 2.7581 -4.3652 3.4230 18 6 2.7110 -5.4940 4.1579 19 8 2.0285 -5.5366 5.1645 20 6 3.4814 -6.6684 3.7458 21 1 4.0874 -6.6304 2.8526 22 6 3.4320 -7.8414 4.5091 23 7 2.6984 -7.8875 5.5896 24 14 4.4147 -9.3403 3.9829 25 1 5.7638 -9.2900 4.6016 26 1 3.7132 -10.5724 4.4247 27 1 4.5485 -9.3503 2.5039 28 7 3.2194 -1.1898 2.8580 29 7 3.0786 -0.3895 1.8608 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.0785 -2.5601 -0.7395 34 1 1.8983 -3.7167 -2.7498 35 1 3.0861 0.9942 -1.9681 36 1 4.9935 0.3961 -4.0099 37 1 3.5717 0.4152 -5.0963 38 1 4.7620 -1.2991 -6.1833 39 1 5.6400 -1.7662 -4.6905 40 1 2.8380 -2.5139 -5.5818 41 1 4.0230 -3.4814 -4.6533 42 1 0.5323 -2.2612 1.4754 43 1 2.3113 -2.8726 4.8270 44 1 0.9272 -3.4415 3.8631 45 1 3.3024 -4.3311 2.6208 46 1 2.6645 -8.6999 6.1185 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603232681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:09 Heat of formation + Delta-G solvation = 77.671777 kcal Electronic energy + Delta-G solvation = -28339.489952 eV Core-core repulsion = 24423.664371 eV Total energy + Delta-G solvation = -3915.825581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.18627 -40.53408 -37.50620 -37.11925 -34.81354 -33.61134 -32.32805 -31.91523 -30.95187 -30.58088 -28.75905 -27.75069 -27.03367 -25.19418 -24.47184 -23.03855 -21.94712 -21.23141 -21.17988 -20.06739 -19.57003 -17.60387 -17.04139 -16.74040 -16.23662 -15.98480 -15.50578 -15.27766 -15.12409 -14.79184 -14.32872 -13.97376 -13.70759 -13.61118 -13.55202 -13.36279 -13.26523 -13.08640 -12.85996 -12.66811 -12.20593 -11.99170 -11.90865 -11.71753 -11.58324 -11.49772 -11.28759 -11.25671 -11.11927 -11.08709 -10.91249 -10.53033 -10.41071 -10.19478 -9.98944 -9.14392 -9.10433 -8.81677 -8.80664 -7.55830 -7.45254 -6.13920 -4.58783 0.82276 1.05845 1.70490 2.35248 2.70347 3.17869 3.24427 3.27804 3.37526 3.84624 4.10726 4.16040 4.20697 4.22093 4.44495 4.57901 4.60873 4.64063 4.67195 4.76693 4.88779 4.99378 5.02438 5.08173 5.19869 5.21630 5.26287 5.27089 5.34424 5.39663 5.41342 5.49814 5.52463 5.68059 5.71343 5.75544 5.81714 5.88899 6.05150 6.11588 6.19099 6.29061 6.48771 6.57214 6.61469 6.66825 7.48361 7.97425 8.12746 8.38319 8.69724 9.07350 9.58197 10.64621 10.83130 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.002746 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.442787 B =10192.369351 C =12153.177314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.190 3.810 3 H 0.118 0.882 4 C -0.112 4.112 5 C -0.095 4.095 6 C -0.104 4.104 7 C -0.086 4.086 8 C -0.100 4.100 9 C -0.083 4.083 10 C -0.082 4.082 11 C -0.122 4.122 12 C -0.085 4.085 13 N -0.288 5.288 14 C -0.040 4.040 15 C -0.017 4.017 16 C 0.217 3.783 17 N -0.761 5.761 18 C 0.557 3.443 19 O -0.581 6.581 20 C -0.543 4.543 21 H 0.067 0.933 22 C 0.088 3.912 23 N -0.768 5.768 24 Si 0.907 3.093 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.266 1.266 28 N -0.255 5.255 29 N -0.089 5.089 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.187 0.813 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.381 0.619 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 16.557 -24.026 29.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.088 3.912 3 H 0.136 0.864 4 C -0.113 4.113 5 C -0.113 4.113 6 C -0.122 4.122 7 C -0.086 4.086 8 C -0.100 4.100 9 C -0.101 4.101 10 C -0.118 4.118 11 C -0.159 4.159 12 C -0.122 4.122 13 N -0.082 5.082 14 C -0.190 4.190 15 C -0.155 4.155 16 C 0.090 3.910 17 N -0.417 5.417 18 C 0.361 3.639 19 O -0.464 6.464 20 C -0.580 4.580 21 H 0.085 0.915 22 C -0.132 4.132 23 N -0.397 5.397 24 Si 0.732 3.268 25 H -0.197 1.197 26 H -0.205 1.205 27 H -0.190 1.190 28 N -0.122 5.122 29 N -0.068 5.068 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.204 0.796 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.212 0.788 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.867 17.406 -22.987 28.976 hybrid contribution -0.232 -1.378 -0.811 1.616 sum -3.099 16.029 -23.798 28.860 Atomic orbital electron populations 1.22217 0.91148 1.04329 1.04222 1.20386 0.95742 0.96348 0.78700 0.86421 1.19600 1.00766 0.95175 0.95777 1.20918 0.99449 0.93743 0.97209 1.20647 0.97778 1.00071 0.93683 1.20761 0.97038 0.94650 0.96197 1.20539 0.98956 0.94800 0.95680 1.20416 0.96615 0.99889 0.93218 1.21049 0.98070 0.98091 0.94638 1.22307 0.98521 0.94398 1.00678 1.21153 0.97438 0.99670 0.93914 1.47485 1.17796 1.21941 1.20982 1.23293 1.03837 0.94091 0.97817 1.22326 0.93985 1.00221 0.98975 1.19042 0.96671 0.81616 0.93679 1.46150 1.52412 1.12221 1.30925 1.18206 0.81983 0.81255 0.82444 1.90601 1.45296 1.83341 1.27123 1.20860 1.29591 0.96024 1.11538 0.91505 1.25695 0.94212 0.99375 0.93896 1.70024 1.31068 1.26962 1.11673 0.86384 0.80068 0.80702 0.79652 1.19725 1.20482 1.18978 1.75114 1.21086 1.03516 1.12521 1.78285 1.03927 1.21763 1.02791 0.90685 0.89337 0.90778 0.85637 0.85647 0.85828 0.90557 0.90162 0.90448 0.90774 0.90047 0.90356 0.79618 0.91468 0.91564 0.78798 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 8.64 37.16 0.32 -0.68 16 2 C 0.19 1.68 3.48 -69.08 -0.24 1.44 16 3 H 0.12 0.90 7.87 -51.93 -0.41 0.49 16 4 C -0.11 -1.07 4.98 -104.66 -0.52 -1.59 16 5 C -0.09 -0.95 8.83 -39.62 -0.35 -1.30 16 6 C -0.10 -1.02 10.04 -39.54 -0.40 -1.42 16 7 C -0.09 -0.80 6.14 -104.05 -0.64 -1.44 16 8 C -0.10 -0.90 6.14 -104.21 -0.64 -1.54 16 9 C -0.08 -0.75 9.67 -39.54 -0.38 -1.13 16 10 C -0.08 -0.54 6.77 -26.85 -0.18 -0.72 16 11 C -0.12 -0.74 7.07 -25.31 -0.18 -0.91 16 12 C -0.08 -0.60 6.80 -26.68 -0.18 -0.78 16 13 N -0.29 -3.72 3.18 -55.89 -0.18 -3.89 16 14 C -0.04 -0.54 9.52 -17.05 -0.16 -0.70 16 15 C -0.02 -0.30 6.62 -82.78 -0.55 -0.85 16 16 C 0.22 4.41 6.23 -5.20 -0.03 4.38 16 17 N -0.76 -17.90 5.54 -62.91 -0.35 -18.25 16 18 C 0.56 16.21 7.75 -12.99 -0.10 16.11 16 19 O -0.58 -19.04 15.02 5.20 0.08 -18.97 16 20 C -0.54 -15.69 9.54 -35.63 -0.34 -16.03 16 21 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 22 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 23 N -0.77 -23.35 11.83 55.55 0.66 -22.69 16 24 Si 0.91 20.49 29.56 -169.99 -5.02 15.47 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 28 N -0.26 -4.83 12.41 33.29 0.41 -4.42 16 29 N -0.09 -1.47 13.17 60.35 0.79 -0.68 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.45 6.43 -51.93 -0.33 0.11 16 33 H 0.13 1.18 6.56 -52.49 -0.34 0.84 16 34 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.12 0.89 7.94 -52.49 -0.42 0.47 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.19 1.91 7.09 -52.49 -0.37 1.54 16 43 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.38 8.33 8.44 -40.82 -0.34 7.98 16 46 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -37.63 385.69 -8.88 -46.51 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.42 Total: 5.87 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -4.67 Total: -4.76 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 1.34 Total: -49.93 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.08 Total: -18.97 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.63 -8.88 -46.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603232681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.184 kcal (2) G-P(sol) polarization free energy of solvation -37.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds