Wall clock time and date at job start Sat Apr 11 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47741 * 2 1 4 4 C 1.50709 * 109.46792 * 240.00386 * 2 1 3 5 5 C 1.38256 * 120.02933 * 299.99909 * 4 2 1 6 6 C 1.38104 * 119.92742 * 179.97438 * 5 4 2 7 7 C 1.38495 * 120.21843 * 0.02562 * 6 5 4 8 8 C 1.38216 * 119.85241 * 359.97438 * 7 6 5 9 9 C 1.38104 * 120.03093 * 119.96090 * 4 2 1 10 10 C 1.51367 * 109.75788 * 179.97438 * 8 7 6 11 11 C 1.54347 * 105.17417 * 342.82277 * 10 8 7 12 12 C 1.51680 * 130.30753 * 179.79079 * 7 6 5 13 13 N 1.46496 * 109.47056 * 120.00867 * 2 1 3 14 14 C 1.35309 * 125.87308 * 34.99522 * 13 2 1 15 15 C 1.35358 * 106.17636 * 180.02562 * 14 13 2 16 16 C 1.50700 * 126.74768 * 179.97438 * 15 14 13 17 17 N 1.46493 * 109.47307 * 94.99889 * 16 15 14 18 18 C 1.34777 * 120.00208 * 179.97438 * 17 16 15 19 19 O 1.21693 * 120.00116 * 359.97438 * 18 17 16 20 20 C 1.46376 * 120.00426 * 180.02562 * 18 17 16 21 21 H 1.07999 * 119.99504 * 359.97438 * 20 18 17 22 22 C 1.40040 * 120.00140 * 180.02562 * 20 18 17 23 23 N 1.30675 * 120.00364 * 359.97438 * 22 20 18 24 24 Si 1.86798 * 120.00086 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47321 * 89.99406 * 24 22 20 26 26 H 1.48499 * 109.47541 * 209.99642 * 24 22 20 27 27 H 1.48504 * 109.47217 * 329.99747 * 24 22 20 28 28 N 1.33770 * 106.49477 * 359.97438 * 15 14 13 29 29 N 1.28635 * 108.88738 * 359.73363 * 28 15 14 30 30 H 1.08997 * 109.46910 * 299.99667 * 1 2 3 31 31 H 1.08998 * 109.47038 * 59.99343 * 1 2 3 32 32 H 1.09001 * 109.47169 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.03580 * 359.95523 * 5 4 2 34 34 H 1.08004 * 119.89079 * 180.02562 * 6 5 4 35 35 H 1.07995 * 119.89182 * 0.06445 * 9 4 2 36 36 H 1.08994 * 110.30444 * 223.89683 * 10 8 7 37 37 H 1.09000 * 110.30530 * 101.74809 * 10 8 7 38 38 H 1.09002 * 110.82432 * 144.56674 * 11 10 8 39 39 H 1.09005 * 110.82182 * 267.92131 * 11 10 8 40 40 H 1.08998 * 110.25544 * 78.29277 * 12 7 6 41 41 H 1.09000 * 110.49386 * 316.04090 * 12 7 6 42 42 H 1.07999 * 126.91211 * 359.97438 * 14 13 2 43 43 H 1.09000 * 109.46608 * 214.99574 * 16 15 14 44 44 H 1.09004 * 109.47123 * 334.99315 * 16 15 14 45 45 H 0.97001 * 119.99911 * 359.97438 * 17 16 15 46 46 H 0.97000 * 120.00135 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 1.6986 -2.0340 -1.4501 6 6 2.1596 -2.6828 -2.5787 7 6 2.9560 -2.0120 -3.4919 8 6 3.2895 -0.6887 -3.2725 9 6 2.8256 -0.0396 -2.1405 10 6 4.1606 -0.1863 -4.4038 11 6 4.6815 -1.4572 -5.1078 12 6 3.5830 -2.4931 -4.7866 13 7 2.0183 -0.6908 1.1960 14 6 1.4358 -1.7589 1.7881 15 6 2.2126 -2.0706 2.8519 16 6 1.9874 -3.1897 3.8357 17 7 2.7581 -4.3652 3.4230 18 6 2.7110 -5.4940 4.1579 19 8 2.0285 -5.5366 5.1645 20 6 3.4814 -6.6684 3.7458 21 1 4.0874 -6.6304 2.8526 22 6 3.4320 -7.8414 4.5091 23 7 2.6984 -7.8875 5.5896 24 14 4.4147 -9.3403 3.9829 25 1 5.7638 -9.2900 4.6016 26 1 3.7132 -10.5724 4.4247 27 1 4.5485 -9.3503 2.5039 28 7 3.2194 -1.1898 2.8580 29 7 3.0786 -0.3895 1.8608 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.0785 -2.5601 -0.7395 34 1 1.8983 -3.7167 -2.7498 35 1 3.0861 0.9942 -1.9681 36 1 4.9935 0.3961 -4.0099 37 1 3.5717 0.4152 -5.0963 38 1 4.7620 -1.2991 -6.1833 39 1 5.6400 -1.7662 -4.6905 40 1 2.8380 -2.5139 -5.5818 41 1 4.0230 -3.4814 -4.6533 42 1 0.5323 -2.2612 1.4754 43 1 2.3113 -2.8726 4.8270 44 1 0.9272 -3.4415 3.8631 45 1 3.3024 -4.3311 2.6208 46 1 2.6645 -8.6999 6.1185 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603232681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:09 Heat of formation + Delta-G solvation = 52.687909 kcal Electronic energy + Delta-G solvation = -28340.573334 eV Core-core repulsion = 24423.664371 eV Total energy + Delta-G solvation = -3916.908963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.38743 -41.18489 -39.37580 -38.12455 -35.89068 -35.20004 -34.47392 -32.68610 -32.34089 -31.59773 -29.35594 -29.03990 -28.26439 -26.90462 -25.43680 -23.72740 -22.88847 -22.54804 -21.74253 -21.70853 -20.85146 -19.37960 -18.16228 -17.78898 -17.40065 -16.95723 -16.69005 -16.35644 -16.16842 -15.93733 -15.85866 -15.66219 -15.21189 -14.55343 -14.33475 -14.29543 -14.17937 -13.87104 -13.74763 -13.72233 -13.42052 -13.30921 -13.11571 -12.80799 -12.71393 -12.60838 -12.53210 -12.45771 -12.34439 -12.07529 -12.00740 -11.92312 -11.75858 -11.68268 -11.13166 -10.92378 -10.44654 -9.82846 -9.80503 -9.50711 -9.47841 -8.28265 -6.84923 0.09705 0.36467 0.57333 1.31271 1.41369 1.42586 1.42754 1.57769 2.26761 2.47736 2.68211 3.09332 3.25617 3.34151 3.50839 3.59047 3.62104 3.66705 3.81918 3.86810 4.01759 4.10870 4.15516 4.19310 4.32022 4.39290 4.43966 4.60456 4.65265 4.68991 4.72065 4.75230 4.85889 4.91248 4.93403 4.98756 5.01507 5.11654 5.14919 5.19869 5.29298 5.32645 5.40656 5.41036 5.62386 5.63972 5.86829 5.95260 6.15480 6.25818 6.87367 7.44165 7.50374 8.48167 8.67540 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.002746 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.442787 B =10192.369351 C =12153.177314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.183 3.817 3 H 0.132 0.868 4 C -0.119 4.119 5 C -0.109 4.109 6 C -0.121 4.121 7 C -0.100 4.100 8 C -0.111 4.111 9 C -0.092 4.092 10 C -0.081 4.081 11 C -0.120 4.120 12 C -0.086 4.086 13 N -0.272 5.272 14 C -0.011 4.011 15 C -0.042 4.042 16 C 0.224 3.776 17 N -0.749 5.749 18 C 0.542 3.458 19 O -0.629 6.629 20 C -0.572 4.572 21 H 0.083 0.917 22 C 0.030 3.970 23 N -0.820 5.820 24 Si 0.998 3.002 25 H -0.264 1.264 26 H -0.269 1.269 27 H -0.250 1.250 28 N -0.294 5.294 29 N -0.104 5.104 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.222 0.778 43 H 0.041 0.959 44 H 0.074 0.926 45 H 0.390 0.610 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 16.734 -27.042 31.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.084 3.916 3 H 0.150 0.850 4 C -0.120 4.120 5 C -0.127 4.127 6 C -0.139 4.139 7 C -0.100 4.100 8 C -0.111 4.111 9 C -0.110 4.110 10 C -0.118 4.118 11 C -0.157 4.157 12 C -0.123 4.123 13 N -0.065 5.065 14 C -0.163 4.163 15 C -0.181 4.181 16 C 0.098 3.902 17 N -0.403 5.403 18 C 0.347 3.653 19 O -0.516 6.516 20 C -0.609 4.609 21 H 0.101 0.899 22 C -0.185 4.185 23 N -0.449 5.449 24 Si 0.817 3.183 25 H -0.189 1.189 26 H -0.194 1.194 27 H -0.173 1.173 28 N -0.161 5.161 29 N -0.082 5.082 30 H 0.097 0.903 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.239 0.761 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.222 0.778 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.730 17.653 -26.060 31.595 hybrid contribution -0.314 -1.315 0.022 1.352 sum -3.044 16.339 -26.039 30.891 Atomic orbital electron populations 1.22264 0.88739 1.05027 1.05484 1.20854 0.97566 0.96445 0.76765 0.85020 1.19658 1.01144 0.95142 0.96040 1.21060 0.99945 0.94193 0.97539 1.20850 0.98361 1.00585 0.94118 1.21118 0.96865 0.95072 0.96947 1.20921 0.99031 0.94884 0.96241 1.20695 0.96272 1.00805 0.93238 1.21123 0.97986 0.98499 0.94166 1.22338 0.97756 0.93711 1.01885 1.21231 0.97953 0.99841 0.93253 1.47855 1.16379 1.21224 1.21080 1.23636 1.03621 0.93223 0.95793 1.21896 0.95590 1.00299 1.00281 1.18899 0.96342 0.81447 0.93483 1.45834 1.52171 1.11997 1.30317 1.18553 0.81710 0.82806 0.82280 1.90555 1.47264 1.84562 1.29189 1.21374 1.30145 0.96812 1.12523 0.89897 1.26949 0.95048 1.03148 0.93400 1.70179 1.32887 1.28582 1.13270 0.85026 0.77978 0.75398 0.79913 1.18857 1.19402 1.17299 1.75051 1.22421 1.04587 1.14063 1.78193 1.05380 1.21791 1.02868 0.90329 0.87134 0.90381 0.85347 0.85175 0.84217 0.90197 0.88640 0.88410 0.91389 0.88769 0.90504 0.76120 0.94028 0.90788 0.77765 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.64 71.98 0.62 -0.86 16 2 C 0.18 2.83 3.48 44.25 0.15 2.99 16 3 H 0.13 1.69 7.87 -2.39 -0.02 1.68 16 4 C -0.12 -2.05 4.98 -19.89 -0.10 -2.15 16 5 C -0.11 -2.04 8.83 22.24 0.20 -1.85 16 6 C -0.12 -2.29 10.04 22.30 0.22 -2.06 16 7 C -0.10 -1.74 6.14 -19.50 -0.12 -1.86 16 8 C -0.11 -1.81 6.14 -19.60 -0.12 -1.93 16 9 C -0.09 -1.50 9.67 22.30 0.22 -1.28 16 10 C -0.08 -0.90 6.77 30.52 0.21 -0.69 16 11 C -0.12 -1.20 7.07 31.52 0.22 -0.98 16 12 C -0.09 -1.07 6.80 30.62 0.21 -0.86 16 13 N -0.27 -6.59 3.18 -330.73 -1.05 -7.64 16 14 C -0.01 -0.27 9.52 83.49 0.80 0.52 16 15 C -0.04 -1.47 6.62 41.60 0.28 -1.20 16 16 C 0.22 9.42 6.23 85.63 0.53 9.95 16 17 N -0.75 -36.06 5.54 -471.15 -2.61 -38.67 16 18 C 0.54 32.48 7.75 86.36 0.67 33.15 16 19 O -0.63 -42.88 15.02 -4.32 -0.06 -42.95 16 20 C -0.57 -33.40 9.54 24.83 0.24 -33.17 16 21 H 0.08 4.41 7.85 -2.91 -0.02 4.38 16 22 C 0.03 1.69 5.50 85.30 0.47 2.16 16 23 N -0.82 -50.87 11.83 21.83 0.26 -50.61 16 24 Si 1.00 41.76 29.56 68.60 2.03 43.79 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 27 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 28 N -0.29 -11.28 12.41 -48.60 -0.60 -11.88 16 29 N -0.10 -3.38 13.17 37.02 0.49 -2.89 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.70 6.43 -2.39 -0.02 0.68 16 33 H 0.13 2.21 6.56 -2.91 -0.02 2.19 16 34 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.14 1.71 7.94 -2.91 -0.02 1.69 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 41 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.22 3.93 7.09 -2.91 -0.02 3.91 16 43 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 45 H 0.39 17.26 8.44 -92.71 -0.78 16.47 16 46 H 0.28 15.41 8.29 -92.71 -0.77 14.64 16 Total: -1.00 -84.61 385.69 3.36 -81.25 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.23 Total: 29.72 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 4.69 Total: -0.12 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -3.52 Total: -111.69 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.06 Total: -42.95 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -84.61 3.36 -81.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603232681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.939 kcal (2) G-P(sol) polarization free energy of solvation -84.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds