Wall clock time and date at job start Sat Apr 11 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47366 * 2 1 4 4 N 1.46501 * 109.47265 * 120.00589 * 2 1 3 5 5 C 1.34785 * 119.99750 * 275.00026 * 4 2 1 6 6 O 1.21282 * 119.99801 * 359.97438 * 5 4 2 7 7 C 1.50693 * 119.99813 * 179.97438 * 5 4 2 8 8 C 1.50705 * 109.47142 * 179.97438 * 7 5 4 9 9 C 1.37637 * 120.12851 * 265.00416 * 8 7 5 10 10 C 1.38616 * 120.24515 * 179.97438 * 9 8 7 11 11 C 1.38657 * 120.50384 * 0.02562 * 10 9 8 12 12 C 1.37601 * 120.24772 * 0.03117 * 11 10 9 13 13 C 1.40701 * 120.12481 * 84.72473 * 8 7 5 14 14 C 1.41396 * 120.24288 * 0.02562 * 13 8 7 15 15 H 1.08003 * 120.00038 * 329.69339 * 14 13 8 16 16 C 1.39943 * 120.00142 * 149.70127 * 14 13 8 17 17 N 1.30828 * 120.00237 * 162.01271 * 16 14 13 18 18 Si 1.86799 * 119.99942 * 342.01235 * 16 14 13 19 19 H 1.48497 * 109.47286 * 95.40144 * 18 16 14 20 20 H 1.48500 * 109.47039 * 215.39933 * 18 16 14 21 21 H 1.48499 * 109.47032 * 335.40169 * 18 16 14 22 22 C 1.50704 * 109.47043 * 240.00293 * 2 1 3 23 23 N 1.30504 * 126.37025 * 284.97501 * 22 2 1 24 24 N 1.28567 * 109.66940 * 179.97438 * 23 22 2 25 25 C 1.30681 * 109.63499 * 359.91113 * 24 23 22 26 26 N 1.35177 * 107.32818 * 0.19265 * 25 24 23 27 27 C 1.46803 * 111.14876 * 179.69917 * 26 25 24 28 28 C 1.54764 * 105.58328 * 17.04238 * 27 26 25 29 29 C 1.51341 * 142.72336 * 180.16807 * 25 24 23 30 30 H 1.08994 * 109.47353 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47038 * 299.99821 * 1 2 3 32 32 H 1.09000 * 109.47119 * 59.99141 * 1 2 3 33 33 H 0.96997 * 120.00199 * 94.99596 * 4 2 1 34 34 H 1.08997 * 109.47720 * 299.99651 * 7 5 4 35 35 H 1.09006 * 109.47116 * 60.00176 * 7 5 4 36 36 H 1.07989 * 119.87826 * 359.97438 * 9 8 7 37 37 H 1.07995 * 119.74980 * 180.02562 * 10 9 8 38 38 H 1.08000 * 119.88099 * 179.97438 * 11 10 9 39 39 H 1.08002 * 120.12821 * 179.97438 * 12 11 10 40 40 H 0.96996 * 119.99885 * 180.02562 * 17 16 14 41 41 H 1.08995 * 110.22861 * 136.06519 * 27 26 25 42 42 H 1.08998 * 110.22997 * 257.94203 * 27 26 25 43 43 H 1.08994 * 111.07904 * 216.28995 * 28 27 26 44 44 H 1.09002 * 110.98746 * 92.45239 * 28 27 26 45 45 H 1.09002 * 110.47046 * 282.26823 * 29 25 24 46 46 H 1.08994 * 110.47158 * 44.74593 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3572 6 8 1.8590 1.1585 2.4116 7 6 2.6488 -0.7290 3.5876 8 6 2.7002 0.2394 4.7412 9 6 3.8732 0.8935 5.0423 10 6 3.9231 1.7852 6.1025 11 6 2.7951 2.0284 6.8713 12 6 1.6120 1.3848 6.5891 13 6 1.5478 0.4828 5.5108 14 6 0.3359 -0.1794 5.2074 15 1 0.1154 -0.4623 4.1886 16 6 -0.5781 -0.4681 6.2271 17 7 -1.8212 -0.7485 5.9312 18 14 -0.0230 -0.4531 8.0106 19 1 -0.3243 0.8709 8.6117 20 1 -0.7424 -1.5130 8.7618 21 1 1.4389 -0.7053 8.0762 22 6 2.0323 -0.7104 -1.2305 23 7 2.0342 -1.9996 -1.4333 24 7 2.5342 -2.2550 -2.5899 25 6 2.8724 -1.1382 -3.1784 26 7 2.5668 -0.1289 -2.3328 27 6 2.9214 1.1728 -2.9117 28 6 3.1026 0.9182 -4.4274 29 6 3.4754 -0.5818 -4.4501 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 2.2490 -1.6319 1.1525 34 1 1.9760 -1.5508 3.8325 35 1 3.6480 -1.1215 3.3985 36 1 4.7579 0.7114 4.4505 37 1 4.8475 2.2943 6.3314 38 1 2.8454 2.7248 7.6952 39 1 0.7346 1.5754 7.1894 40 1 -2.4548 -0.9482 6.6380 41 1 2.1190 1.8911 -2.7436 42 1 3.8513 1.5383 -2.4761 43 1 3.9104 1.5269 -4.8334 44 1 2.1726 1.0970 -4.9673 45 1 4.5583 -0.7056 -4.4444 46 1 3.0414 -1.0694 -5.3229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777366744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:19 Heat of formation + Delta-G solvation = 67.961011 kcal Electronic energy + Delta-G solvation = -29024.178911 eV Core-core repulsion = 25107.932239 eV Total energy + Delta-G solvation = -3916.246672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.63248 -39.42269 -37.75090 -37.52418 -35.41193 -33.54340 -32.59401 -31.91494 -30.60229 -30.25799 -29.57143 -27.80833 -26.87914 -24.87902 -23.97319 -22.92712 -21.51273 -21.34319 -20.89736 -20.05214 -19.38235 -17.57098 -17.30891 -16.97468 -16.14546 -15.95913 -15.59101 -15.17707 -14.79263 -14.54289 -14.33010 -13.92142 -13.84646 -13.69658 -13.66594 -13.58191 -13.22477 -12.71581 -12.60826 -12.21362 -12.18020 -12.04464 -11.91423 -11.83352 -11.62753 -11.44672 -11.35309 -11.06858 -10.76508 -10.69334 -10.50821 -10.35348 -10.21200 -9.67016 -9.52414 -9.38873 -9.14078 -9.08124 -8.84106 -7.56052 -7.46234 -6.89012 -4.42958 1.52247 2.09402 2.58794 2.65254 2.75864 3.15881 3.23406 3.26414 3.34027 3.36478 3.59136 3.85355 4.02651 4.03016 4.13770 4.27898 4.56274 4.75201 4.83284 4.89214 5.03000 5.15566 5.16828 5.30052 5.32976 5.38889 5.55604 5.65779 5.76814 5.88993 5.93045 5.94784 6.07376 6.12423 6.22580 6.32481 6.34242 6.53509 6.62617 6.71183 6.76236 6.99610 7.24954 7.47117 7.70251 7.78268 7.90498 7.96061 8.18993 8.41104 8.54198 8.72952 8.79203 8.87225 10.13061 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.002742 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.604092 B =10208.045744 C =11028.358635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.238 3.762 3 H 0.098 0.902 4 N -0.732 5.732 5 C 0.522 3.478 6 O -0.521 6.521 7 C -0.073 4.073 8 C -0.166 4.166 9 C -0.069 4.069 10 C -0.243 4.243 11 C -0.080 4.080 12 C -0.234 4.234 13 C 0.110 3.890 14 C -0.443 4.443 15 H 0.090 0.910 16 C 0.085 3.915 17 N -0.808 5.808 18 Si 0.909 3.091 19 H -0.272 1.272 20 H -0.292 1.292 21 H -0.244 1.244 22 C 0.195 3.805 23 N -0.276 5.276 24 N -0.279 5.279 25 C 0.152 3.848 26 N -0.489 5.489 27 C 0.098 3.902 28 C -0.128 4.128 29 C -0.039 4.039 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.406 0.594 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.284 0.716 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.756 2.323 -18.731 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.129 3.871 3 H 0.116 0.884 4 N -0.388 5.388 5 C 0.310 3.690 6 O -0.395 6.395 7 C -0.113 4.113 8 C -0.168 4.168 9 C -0.088 4.088 10 C -0.263 4.263 11 C -0.098 4.098 12 C -0.253 4.253 13 C 0.107 3.893 14 C -0.471 4.471 15 H 0.108 0.892 16 C -0.134 4.134 17 N -0.433 5.433 18 Si 0.736 3.264 19 H -0.198 1.198 20 H -0.220 1.220 21 H -0.167 1.167 22 C -0.072 4.072 23 N -0.116 5.116 24 N -0.119 5.119 25 C -0.116 4.116 26 N -0.181 5.181 27 C -0.024 4.024 28 C -0.166 4.166 29 C -0.079 4.079 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.241 0.759 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.124 0.876 44 H 0.109 0.891 45 H 0.120 0.880 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.000 1.705 -18.270 20.018 hybrid contribution 0.235 0.966 0.545 1.134 sum 8.234 2.672 -17.726 19.727 Atomic orbital electron populations 1.22166 0.92744 1.03638 1.03076 1.18906 0.94747 0.95036 0.78373 0.88427 1.46118 1.69655 1.14478 1.08543 1.21185 0.76603 0.87566 0.83674 1.90682 1.48289 1.16199 1.84337 1.20291 1.01422 0.99002 0.90565 1.19053 0.93697 1.03534 1.00478 1.20424 0.96060 0.95970 0.96299 1.20315 0.97626 1.06650 1.01680 1.20592 0.93463 0.98019 0.97755 1.20996 0.97244 1.03454 1.03591 1.17482 0.91869 0.89893 0.90085 1.19421 0.98507 1.32430 0.96779 0.89216 1.26154 0.93606 0.91643 1.01991 1.69706 1.03064 1.33991 1.36499 0.86349 0.81320 0.77575 0.81144 1.19820 1.22011 1.16671 1.24631 1.00869 0.90586 0.91073 1.74397 1.17795 1.09921 1.09443 1.74007 1.14762 1.21579 1.01583 1.25983 1.03456 0.85872 0.96277 1.47168 1.45599 1.10724 1.14592 1.22542 1.03117 0.82603 0.94140 1.22871 1.04366 0.95676 0.93669 1.20649 1.01481 0.94008 0.91753 0.91182 0.89864 0.92293 0.75899 0.87847 0.90228 0.89188 0.89083 0.89058 0.88345 0.90602 0.88288 0.88435 0.87609 0.89099 0.88034 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.47 37.15 0.35 -1.92 16 2 C 0.24 3.45 3.12 -69.08 -0.22 3.24 16 3 H 0.10 1.43 7.58 -51.93 -0.39 1.04 16 4 N -0.73 -11.71 5.07 -54.93 -0.28 -11.99 16 5 C 0.52 10.17 7.39 -10.99 -0.08 10.09 16 6 O -0.52 -12.10 15.70 5.56 0.09 -12.01 16 7 C -0.07 -1.42 5.19 -29.04 -0.15 -1.57 16 8 C -0.17 -3.83 4.43 -103.91 -0.46 -4.29 16 9 C -0.07 -1.50 9.66 -39.66 -0.38 -1.88 16 10 C -0.24 -5.27 10.05 -39.29 -0.39 -5.66 16 11 C -0.08 -1.81 10.02 -39.66 -0.40 -2.21 16 12 C -0.23 -5.86 7.17 -38.87 -0.28 -6.13 16 13 C 0.11 2.82 5.10 -106.82 -0.55 2.28 16 14 C -0.44 -11.93 8.56 -37.74 -0.32 -12.26 16 15 H 0.09 2.53 6.99 -52.48 -0.37 2.17 16 16 C 0.08 2.23 5.41 -17.34 -0.09 2.14 16 17 N -0.81 -21.70 13.93 55.55 0.77 -20.93 16 18 Si 0.91 21.07 24.52 -169.99 -4.17 16.91 16 19 H -0.27 -6.20 6.71 56.52 0.38 -5.82 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.24 -5.75 6.85 56.52 0.39 -5.36 16 22 C 0.20 2.70 7.09 -154.90 -1.10 1.60 16 23 N -0.28 -4.37 11.92 32.81 0.39 -3.98 16 24 N -0.28 -4.22 12.22 32.93 0.40 -3.81 16 25 C 0.15 1.70 8.69 -154.83 -1.35 0.35 16 26 N -0.49 -5.31 3.62 -109.19 -0.40 -5.71 16 27 C 0.10 0.59 7.78 -2.95 -0.02 0.57 16 28 C -0.13 -0.40 7.20 -24.97 -0.18 -0.58 16 29 C -0.04 -0.21 6.84 -26.74 -0.18 -0.39 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.41 5.97 8.36 -40.82 -0.34 5.62 16 34 H 0.10 2.01 7.15 -51.93 -0.37 1.64 16 35 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.10 2.46 4.74 -52.49 -0.25 2.21 16 40 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.11 0.07 8.14 -51.93 -0.42 -0.35 16 44 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -34.52 379.43 -9.66 -44.17 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.38 Total: 8.28 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -5.80 Total: -16.64 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.89 Total: -46.42 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.17 Total: 16.91 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.52 -9.66 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777366744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.132 kcal (2) G-P(sol) polarization free energy of solvation -34.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds