Wall clock time and date at job start Sat Apr 11 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47366 * 2 1 4 4 N 1.46501 * 109.47265 * 120.00589 * 2 1 3 5 5 C 1.34785 * 119.99750 * 275.00026 * 4 2 1 6 6 O 1.21282 * 119.99801 * 359.97438 * 5 4 2 7 7 C 1.50693 * 119.99813 * 179.97438 * 5 4 2 8 8 C 1.50705 * 109.47142 * 179.97438 * 7 5 4 9 9 C 1.37637 * 120.12851 * 265.00416 * 8 7 5 10 10 C 1.38616 * 120.24515 * 179.97438 * 9 8 7 11 11 C 1.38657 * 120.50384 * 0.02562 * 10 9 8 12 12 C 1.37601 * 120.24772 * 0.03117 * 11 10 9 13 13 C 1.40701 * 120.12481 * 84.72473 * 8 7 5 14 14 C 1.41396 * 120.24288 * 0.02562 * 13 8 7 15 15 H 1.08003 * 120.00038 * 329.69339 * 14 13 8 16 16 C 1.39943 * 120.00142 * 149.70127 * 14 13 8 17 17 N 1.30828 * 120.00237 * 162.01271 * 16 14 13 18 18 Si 1.86799 * 119.99942 * 342.01235 * 16 14 13 19 19 H 1.48497 * 109.47286 * 95.40144 * 18 16 14 20 20 H 1.48500 * 109.47039 * 215.39933 * 18 16 14 21 21 H 1.48499 * 109.47032 * 335.40169 * 18 16 14 22 22 C 1.50704 * 109.47043 * 240.00293 * 2 1 3 23 23 N 1.30504 * 126.37025 * 284.97501 * 22 2 1 24 24 N 1.28567 * 109.66940 * 179.97438 * 23 22 2 25 25 C 1.30681 * 109.63499 * 359.91113 * 24 23 22 26 26 N 1.35177 * 107.32818 * 0.19265 * 25 24 23 27 27 C 1.46803 * 111.14876 * 179.69917 * 26 25 24 28 28 C 1.54764 * 105.58328 * 17.04238 * 27 26 25 29 29 C 1.51341 * 142.72336 * 180.16807 * 25 24 23 30 30 H 1.08994 * 109.47353 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47038 * 299.99821 * 1 2 3 32 32 H 1.09000 * 109.47119 * 59.99141 * 1 2 3 33 33 H 0.96997 * 120.00199 * 94.99596 * 4 2 1 34 34 H 1.08997 * 109.47720 * 299.99651 * 7 5 4 35 35 H 1.09006 * 109.47116 * 60.00176 * 7 5 4 36 36 H 1.07989 * 119.87826 * 359.97438 * 9 8 7 37 37 H 1.07995 * 119.74980 * 180.02562 * 10 9 8 38 38 H 1.08000 * 119.88099 * 179.97438 * 11 10 9 39 39 H 1.08002 * 120.12821 * 179.97438 * 12 11 10 40 40 H 0.96996 * 119.99885 * 180.02562 * 17 16 14 41 41 H 1.08995 * 110.22861 * 136.06519 * 27 26 25 42 42 H 1.08998 * 110.22997 * 257.94203 * 27 26 25 43 43 H 1.08994 * 111.07904 * 216.28995 * 28 27 26 44 44 H 1.09002 * 110.98746 * 92.45239 * 28 27 26 45 45 H 1.09002 * 110.47046 * 282.26823 * 29 25 24 46 46 H 1.08994 * 110.47158 * 44.74593 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3572 6 8 1.8590 1.1585 2.4116 7 6 2.6488 -0.7290 3.5876 8 6 2.7002 0.2394 4.7412 9 6 3.8732 0.8935 5.0423 10 6 3.9231 1.7852 6.1025 11 6 2.7951 2.0284 6.8713 12 6 1.6120 1.3848 6.5891 13 6 1.5478 0.4828 5.5108 14 6 0.3359 -0.1794 5.2074 15 1 0.1154 -0.4623 4.1886 16 6 -0.5781 -0.4681 6.2271 17 7 -1.8212 -0.7485 5.9312 18 14 -0.0230 -0.4531 8.0106 19 1 -0.3243 0.8709 8.6117 20 1 -0.7424 -1.5130 8.7618 21 1 1.4389 -0.7053 8.0762 22 6 2.0323 -0.7104 -1.2305 23 7 2.0342 -1.9996 -1.4333 24 7 2.5342 -2.2550 -2.5899 25 6 2.8724 -1.1382 -3.1784 26 7 2.5668 -0.1289 -2.3328 27 6 2.9214 1.1728 -2.9117 28 6 3.1026 0.9182 -4.4274 29 6 3.4754 -0.5818 -4.4501 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 2.2490 -1.6319 1.1525 34 1 1.9760 -1.5508 3.8325 35 1 3.6480 -1.1215 3.3985 36 1 4.7579 0.7114 4.4505 37 1 4.8475 2.2943 6.3314 38 1 2.8454 2.7248 7.6952 39 1 0.7346 1.5754 7.1894 40 1 -2.4548 -0.9482 6.6380 41 1 2.1190 1.8911 -2.7436 42 1 3.8513 1.5383 -2.4761 43 1 3.9104 1.5269 -4.8334 44 1 2.1726 1.0970 -4.9673 45 1 4.5583 -0.7056 -4.4444 46 1 3.0414 -1.0694 -5.3229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777366744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:18 Heat of formation + Delta-G solvation = 46.058862 kcal Electronic energy + Delta-G solvation = -29025.128660 eV Core-core repulsion = 25107.932239 eV Total energy + Delta-G solvation = -3917.196420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.53726 -40.98691 -39.41430 -38.26060 -36.78031 -35.47123 -33.81717 -33.25495 -32.17141 -31.73102 -30.46408 -28.54790 -28.51170 -26.71748 -25.17046 -23.54860 -23.19028 -22.41471 -22.08608 -21.27191 -20.97610 -19.24233 -18.52946 -18.01495 -17.62029 -17.26566 -16.92017 -16.48501 -16.15164 -15.83843 -15.57946 -15.45574 -15.29879 -14.79275 -14.61770 -14.49990 -14.33644 -14.16073 -13.92862 -13.83639 -13.71655 -13.29508 -13.11360 -12.84652 -12.69181 -12.66918 -12.55661 -12.50074 -12.48371 -12.24914 -11.99093 -11.52576 -11.47888 -11.36958 -11.09227 -10.96523 -10.90364 -10.33055 -10.15002 -9.38805 -9.28435 -8.84923 -6.43083 0.60083 0.80737 0.91622 1.27574 1.31262 1.41377 1.50018 1.64188 1.71528 2.14453 2.28719 2.64419 2.66614 3.08118 3.41803 3.54514 3.65744 3.82291 3.90575 3.98722 4.07409 4.28691 4.30835 4.32134 4.39133 4.45746 4.48077 4.51291 4.57485 4.68436 4.73516 4.77429 4.82618 4.94718 4.97691 4.98455 5.04213 5.08640 5.14511 5.17611 5.35264 5.38964 5.68251 5.74481 5.88160 5.96683 6.06882 6.31183 6.45615 6.50938 6.82028 6.92313 7.27091 7.57057 8.22910 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.002742 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.604092 B =10208.045744 C =11028.358635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.243 3.757 3 H 0.099 0.901 4 N -0.719 5.719 5 C 0.526 3.474 6 O -0.564 6.564 7 C -0.075 4.075 8 C -0.171 4.171 9 C -0.078 4.078 10 C -0.229 4.229 11 C -0.090 4.090 12 C -0.256 4.256 13 C 0.084 3.916 14 C -0.468 4.468 15 H 0.058 0.942 16 C 0.047 3.953 17 N -0.851 5.851 18 Si 0.963 3.037 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.250 1.250 22 C 0.183 3.817 23 N -0.308 5.308 24 N -0.330 5.330 25 C 0.162 3.838 26 N -0.488 5.488 27 C 0.081 3.919 28 C -0.110 4.110 29 C -0.039 4.039 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.413 0.587 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.091 0.909 40 H 0.290 0.710 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.141 0.859 44 H 0.100 0.900 45 H 0.122 0.878 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.999 3.822 -20.165 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.136 3.864 3 H 0.116 0.884 4 N -0.374 5.374 5 C 0.314 3.686 6 O -0.441 6.441 7 C -0.114 4.114 8 C -0.172 4.172 9 C -0.096 4.096 10 C -0.248 4.248 11 C -0.108 4.108 12 C -0.275 4.275 13 C 0.082 3.918 14 C -0.498 4.498 15 H 0.076 0.924 16 C -0.167 4.167 17 N -0.478 5.478 18 Si 0.787 3.213 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.174 1.174 22 C -0.085 4.085 23 N -0.148 5.148 24 N -0.170 5.170 25 C -0.107 4.107 26 N -0.179 5.179 27 C -0.039 4.039 28 C -0.148 4.148 29 C -0.079 4.079 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.249 0.751 34 H 0.113 0.887 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.160 0.840 44 H 0.118 0.882 45 H 0.140 0.860 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.254 3.193 -19.740 22.946 hybrid contribution -0.559 0.601 0.827 1.165 sum 10.695 3.795 -18.913 22.056 Atomic orbital electron populations 1.22062 0.93070 1.02955 1.02772 1.18831 0.94451 0.94949 0.78215 0.88356 1.45966 1.68399 1.14672 1.08359 1.21110 0.76086 0.86970 0.84414 1.90656 1.50451 1.17957 1.85083 1.20337 1.03445 0.98009 0.89623 1.19480 0.93517 1.03640 1.00588 1.20880 0.96654 0.95415 0.96671 1.20862 0.98555 1.05203 1.00212 1.20979 0.92882 0.98113 0.98877 1.21142 0.98286 1.04236 1.03860 1.17718 0.92312 0.90413 0.91399 1.19333 1.00181 1.34633 0.95660 0.92427 1.26782 0.93507 0.91308 1.05072 1.69745 1.03936 1.36416 1.37724 0.85529 0.80385 0.77988 0.77399 1.19274 1.20668 1.17369 1.24210 1.02133 0.90443 0.91697 1.74279 1.18787 1.11240 1.10509 1.73885 1.17116 1.23923 1.02062 1.27036 1.01072 0.84908 0.97695 1.47463 1.44435 1.12557 1.13463 1.23075 1.03987 0.80714 0.96077 1.22958 1.06204 0.94251 0.91366 1.21040 1.02380 0.95173 0.89288 0.92021 0.92826 0.89804 0.75108 0.88689 0.86358 0.85675 0.85359 0.86039 0.89143 0.89936 0.87413 0.87203 0.84048 0.88190 0.86022 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.56 9.47 71.98 0.68 -3.88 16 2 C 0.24 7.24 3.12 44.24 0.14 7.38 16 3 H 0.10 2.92 7.58 -2.39 -0.02 2.90 16 4 N -0.72 -23.67 5.07 -446.09 -2.26 -25.93 16 5 C 0.53 20.94 7.39 87.65 0.65 21.59 16 6 O -0.56 -26.91 15.70 -3.04 -0.05 -26.96 16 7 C -0.07 -2.90 5.19 29.10 0.15 -2.75 16 8 C -0.17 -7.79 4.43 -19.40 -0.09 -7.88 16 9 C -0.08 -3.16 9.66 22.22 0.21 -2.95 16 10 C -0.23 -9.07 10.05 22.46 0.23 -8.85 16 11 C -0.09 -3.89 10.02 22.22 0.22 -3.66 16 12 C -0.26 -12.78 7.17 22.73 0.16 -12.62 16 13 C 0.08 4.41 5.10 -21.29 -0.11 4.30 16 14 C -0.47 -26.61 8.56 23.46 0.20 -26.41 16 15 H 0.06 3.52 6.99 -2.91 -0.02 3.50 16 16 C 0.05 2.60 5.41 85.26 0.46 3.06 16 17 N -0.85 -48.10 13.93 21.83 0.30 -47.80 16 18 Si 0.96 44.47 24.52 68.60 1.68 46.15 16 19 H -0.27 -11.94 6.71 99.48 0.67 -11.27 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.25 -11.65 6.85 99.48 0.68 -10.97 16 22 C 0.18 5.09 7.09 137.95 0.98 6.07 16 23 N -0.31 -10.00 11.92 -50.10 -0.60 -10.60 16 24 N -0.33 -10.01 12.22 -49.74 -0.61 -10.62 16 25 C 0.16 3.38 8.69 138.24 1.20 4.58 16 26 N -0.49 -9.93 3.62 -499.35 -1.81 -11.74 16 27 C 0.08 0.74 7.78 86.92 0.68 1.42 16 28 C -0.11 -0.22 7.20 31.73 0.23 0.01 16 29 C -0.04 -0.28 6.84 30.59 0.21 -0.08 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.41 12.50 8.36 -92.71 -0.78 11.73 16 34 H 0.09 3.86 7.15 -2.39 -0.02 3.84 16 35 H 0.12 3.57 8.05 -2.38 -0.02 3.55 16 36 H 0.13 4.16 8.06 -2.92 -0.02 4.13 16 37 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 38 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.09 4.56 4.74 -2.91 -0.01 4.55 16 40 H 0.29 14.85 8.30 -92.71 -0.77 14.08 16 41 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.14 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -80.21 379.43 3.04 -77.16 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.18 Total: 30.97 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 6.21 Total: -20.65 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -4.97 Total: -106.68 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.05 Total: -26.96 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.68 Total: 46.15 kcal Total: -80.21 3.04 -77.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777366744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.223 kcal (2) G-P(sol) polarization free energy of solvation -80.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds