Wall clock time and date at job start Sat Apr 11 2020 06:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46574 * 2 1 4 4 N 1.31238 * 124.05674 * 270.18261 * 3 2 1 5 5 N 1.27340 * 120.03836 * 180.37582 * 4 3 2 6 6 S 1.56632 * 109.73714 * 359.68885 * 5 4 3 7 7 C 1.38245 * 124.05417 * 90.00464 * 3 2 1 8 8 C 1.47172 * 128.47630 * 359.97191 * 7 3 2 9 9 O 1.21622 * 120.00215 * 6.85754 * 8 7 3 10 10 N 1.34774 * 120.00240 * 186.86653 * 8 7 3 11 11 C 1.46503 * 119.99670 * 5.65523 * 10 8 7 12 12 C 1.46501 * 120.00510 * 185.65847 * 10 8 7 13 13 C 1.52997 * 109.46920 * 269.99938 * 12 10 8 14 14 C 1.52998 * 109.47061 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47280 * 55.00031 * 14 13 12 16 16 N 1.46499 * 109.47000 * 295.00104 * 14 13 12 17 17 C 1.36941 * 120.00103 * 155.00337 * 16 14 13 18 18 H 1.07999 * 120.00211 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99986 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99832 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99871 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46704 * 60.00172 * 21 19 17 23 23 H 1.48504 * 109.46812 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46942 * 299.99858 * 21 19 17 25 25 C 1.52995 * 109.47282 * 174.99988 * 14 13 12 26 26 C 1.52996 * 109.47346 * 299.99902 * 25 14 13 27 27 C 1.53001 * 109.47282 * 59.99774 * 25 14 13 28 28 H 1.09003 * 109.47282 * 299.99665 * 1 2 3 29 29 H 1.09001 * 109.47111 * 60.00303 * 1 2 3 30 30 H 1.09001 * 109.47139 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47171 * 239.99995 * 2 1 3 32 32 H 1.09001 * 109.47111 * 119.99697 * 2 1 3 33 33 H 1.09002 * 109.47375 * 275.45229 * 11 10 8 34 34 H 1.08998 * 109.47224 * 35.45653 * 11 10 8 35 35 H 1.09002 * 109.46970 * 155.45208 * 11 10 8 36 36 H 1.08995 * 109.47124 * 149.99624 * 12 10 8 37 37 H 1.09004 * 109.46378 * 29.99536 * 12 10 8 38 38 H 1.09004 * 109.47593 * 59.99821 * 13 12 10 39 39 H 1.09004 * 109.47161 * 299.99835 * 13 12 10 40 40 H 0.96998 * 120.00113 * 334.99337 * 16 14 13 41 41 H 0.97001 * 119.99963 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.47365 * 179.97438 * 25 14 13 43 43 H 1.09006 * 109.47039 * 300.00448 * 26 25 14 44 44 H 1.09006 * 109.47335 * 59.99851 * 26 25 14 45 45 H 1.08999 * 109.47797 * 180.02562 * 26 25 14 46 46 H 1.09005 * 109.47066 * 60.00162 * 27 25 14 47 47 H 1.08994 * 109.47121 * 179.97438 * 27 25 14 48 48 H 1.08994 * 109.47204 * 300.00161 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2738 2.1150 -1.0873 5 7 2.7042 3.3101 -0.9981 6 16 2.8500 3.7087 0.5097 7 6 2.2903 2.1508 1.1454 8 6 2.1426 1.7344 2.5492 9 8 1.8674 0.5800 2.8154 10 7 2.3121 2.6323 3.5399 11 6 2.5205 4.0464 3.2189 12 6 2.2882 2.1942 4.9377 13 6 0.8549 2.2617 5.4687 14 6 0.8297 1.8037 6.9283 15 1 1.5364 2.3978 7.5078 16 7 1.2045 0.3894 7.0028 17 6 1.7451 -0.1160 8.1550 18 1 1.8956 0.5282 9.0087 19 6 2.0997 -1.4562 8.2257 20 7 1.9158 -2.2413 7.1855 21 14 2.8378 -2.1454 9.7973 22 1 1.8757 -1.9693 10.9146 23 1 3.1275 -3.5905 9.6158 24 1 4.0975 -1.4240 10.1103 25 6 -0.5786 1.9887 7.4967 26 6 -0.9700 3.4658 7.4190 27 6 -1.5706 1.1549 6.6833 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5766 4.2205 3.0126 34 1 1.9304 4.3106 2.3414 35 1 2.2094 4.6605 4.0641 36 1 2.9275 2.8455 5.5335 37 1 2.6521 1.1688 5.0033 38 1 0.2155 1.6104 4.8728 39 1 0.4910 3.2871 5.4030 40 1 1.0695 -0.1891 6.2360 41 1 2.1639 -3.1778 7.2347 42 1 -0.5967 1.6620 8.5365 43 1 -0.2632 4.0599 7.9984 44 1 -0.9521 3.7922 6.3791 45 1 -1.9731 3.5977 7.8243 46 1 -1.2918 0.1025 6.7387 47 1 -2.5738 1.2864 7.0886 48 1 -1.5527 1.4812 5.6435 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725209646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:51 Heat of formation + Delta-G solvation = 19.777629 kcal Electronic energy + Delta-G solvation = -28427.366290 eV Core-core repulsion = 24644.474181 eV Total energy + Delta-G solvation = -3782.892109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.08580 -40.86796 -38.92439 -36.79166 -35.40782 -35.00428 -32.95028 -31.90094 -30.91449 -28.78166 -28.04653 -27.82459 -26.61062 -25.24786 -24.61215 -23.68052 -22.53767 -20.34549 -19.80427 -19.63185 -19.15896 -18.24347 -17.36980 -17.10976 -16.74436 -16.36879 -15.86219 -15.64032 -15.53911 -15.22612 -15.18040 -14.86447 -14.59323 -14.34867 -14.27051 -14.07743 -13.61424 -13.56487 -13.41087 -13.13058 -12.96457 -12.90455 -12.80240 -12.75557 -12.49724 -12.42393 -12.13908 -12.08676 -11.97921 -11.77850 -11.62722 -11.32897 -11.28355 -11.07581 -10.95308 -10.86626 -10.80506 -10.70509 -9.74316 -8.85539 -7.83615 -5.10360 -1.35192 -0.27595 0.45347 0.83199 1.48579 1.50797 1.56710 1.78269 1.87316 2.61994 2.77906 3.33054 3.48682 3.52027 3.97657 4.00584 4.06513 4.09599 4.16034 4.27677 4.30409 4.33151 4.44118 4.50755 4.60125 4.63080 4.73956 4.76130 4.79199 4.89703 4.95314 4.96819 4.99953 5.11601 5.16145 5.22007 5.24907 5.33153 5.37526 5.46373 5.53097 5.57926 5.68628 5.75455 6.19189 6.37219 6.60079 6.95823 7.43391 8.24217 8.45025 9.39260 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012355 B = 0.003225 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.744246 B = 8681.194070 C = 9433.594222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.050 4.050 3 C 0.095 3.905 4 N -0.272 5.272 5 N -0.307 5.307 6 S 0.533 5.467 7 C -0.314 4.314 8 C 0.586 3.414 9 O -0.544 6.544 10 N -0.600 5.600 11 C 0.049 3.951 12 C 0.129 3.871 13 C -0.123 4.123 14 C 0.180 3.820 15 H 0.052 0.948 16 N -0.729 5.729 17 C -0.227 4.227 18 H 0.076 0.924 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.962 3.038 22 H -0.281 1.281 23 H -0.303 1.303 24 H -0.277 1.277 25 C -0.111 4.111 26 C -0.135 4.135 27 C -0.129 4.129 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.100 0.900 40 H 0.370 0.630 41 H 0.245 0.755 42 H 0.040 0.960 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.023 0.977 47 H 0.051 0.949 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 19.464 -11.999 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.091 4.091 3 C -0.053 4.053 4 N -0.136 5.136 5 N -0.287 5.287 6 S 0.670 5.330 7 C -0.454 4.454 8 C 0.372 3.628 9 O -0.422 6.422 10 N -0.333 5.333 11 C -0.094 4.094 12 C 0.007 3.993 13 C -0.162 4.162 14 C 0.072 3.928 15 H 0.070 0.930 16 N -0.368 5.368 17 C -0.359 4.359 18 H 0.094 0.906 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.793 3.207 22 H -0.208 1.208 23 H -0.230 1.230 24 H -0.204 1.204 25 C -0.132 4.132 26 C -0.193 4.193 27 C -0.187 4.187 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.142 0.858 36 H 0.122 0.878 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.118 0.882 40 H 0.202 0.798 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.042 0.958 47 H 0.070 0.930 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.191 20.426 -12.859 24.138 hybrid contribution -0.114 -2.699 1.203 2.957 sum -0.305 17.727 -11.656 21.218 Atomic orbital electron populations 1.21604 0.92781 1.03342 1.01463 1.20309 0.97474 0.86538 1.04813 1.23072 0.96666 0.99959 0.85638 1.70776 1.14956 0.99488 1.28366 1.78390 1.18734 1.10605 1.20948 1.82257 1.43476 1.10761 0.96476 1.27746 1.15912 1.02551 0.99180 1.16848 0.77792 0.85267 0.82888 1.90906 1.48349 1.19735 1.83166 1.47799 1.70513 1.08960 1.05980 1.22474 1.03431 0.79604 1.03914 1.21474 0.98023 1.01039 0.78804 1.22124 0.96215 1.02169 0.95710 1.20430 0.93590 0.84753 0.94075 0.93046 1.42650 1.74098 1.06308 1.13746 1.19550 1.30767 0.92830 0.92790 0.90638 1.25437 1.04198 0.97225 0.99983 1.69851 1.55958 1.05092 1.31115 0.85369 0.78626 0.76641 0.80084 1.20788 1.22984 1.20361 1.21663 0.96831 0.96144 0.98587 1.21808 1.01104 0.93989 1.02355 1.21629 0.98195 0.99174 0.99657 0.93997 0.91703 0.90251 0.88189 0.89404 0.89232 0.90810 0.85767 0.87782 0.92990 0.93811 0.88206 0.79824 0.94591 0.94141 0.91998 0.91373 0.92761 0.95814 0.92989 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.89 71.98 0.71 -2.41 16 2 C -0.05 -1.29 6.02 29.85 0.18 -1.11 16 3 C 0.09 2.47 6.25 42.65 0.27 2.73 16 4 N -0.27 -7.09 11.54 -48.18 -0.56 -7.64 16 5 N -0.31 -6.96 12.51 37.02 0.46 -6.50 16 6 S 0.53 8.32 19.08 -56.49 -1.08 7.25 16 7 C -0.31 -7.60 6.44 24.62 0.16 -7.44 16 8 C 0.59 17.27 7.64 86.59 0.66 17.93 16 9 O -0.54 -21.49 14.51 -4.10 -0.06 -21.55 16 10 N -0.60 -13.95 2.87 -850.96 -2.44 -16.40 16 11 C 0.05 0.55 8.94 127.77 1.14 1.70 16 12 C 0.13 3.68 5.23 86.38 0.45 4.14 16 13 C -0.12 -3.58 4.36 30.59 0.13 -3.44 16 14 C 0.18 6.42 2.11 44.99 0.09 6.51 16 15 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 16 N -0.73 -35.41 3.81 -322.95 -1.23 -36.64 16 17 C -0.23 -12.29 9.93 84.03 0.83 -11.46 16 18 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 19 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 20 N -0.97 -60.84 13.06 21.65 0.28 -60.55 16 21 Si 0.96 46.60 29.55 68.60 2.03 48.63 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 C -0.11 -3.63 2.91 -10.80 -0.03 -3.66 16 26 C -0.13 -3.06 8.85 71.98 0.64 -2.43 16 27 C -0.13 -4.44 8.68 71.98 0.63 -3.82 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.09 2.67 6.35 -2.39 -0.02 2.66 16 33 H 0.09 0.66 7.70 -2.39 -0.02 0.64 16 34 H 0.07 0.68 5.20 -15.19 -0.08 0.60 16 35 H 0.12 0.77 8.03 -2.39 -0.02 0.75 16 36 H 0.10 2.40 8.07 -2.39 -0.02 2.38 16 37 H 0.05 2.08 7.12 -2.39 -0.02 2.06 16 38 H 0.04 1.52 6.71 -2.38 -0.02 1.51 16 39 H 0.10 2.10 6.18 -2.39 -0.01 2.09 16 40 H 0.37 20.48 7.80 -92.71 -0.72 19.76 16 41 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.07 1.32 6.32 -2.38 -0.02 1.30 16 45 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.02 1.00 7.60 -2.38 -0.02 0.98 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.05 1.71 6.54 -2.39 -0.02 1.70 16 Total: -1.00 -74.86 393.99 3.92 -70.94 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: 0.18 Total: 29.15 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 6.33 Total: -6.69 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -3.48 Total: -127.73 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.06 Total: -21.55 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 16 Polarization: 8.32 SS G_CDS: -1.08 Total: 7.25 kcal Total: -74.86 3.92 -70.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725209646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.721 kcal (2) G-P(sol) polarization free energy of solvation -74.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds