Wall clock time and date at job start Sat Apr 11 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47075 * 2 1 4 4 C 1.53004 * 109.47002 * 119.99499 * 2 1 3 5 5 H 1.09006 * 109.46907 * 54.30204 * 4 2 1 6 6 C 1.52996 * 109.47619 * 294.30518 * 4 2 1 7 7 N 1.46494 * 109.47163 * 184.99865 * 6 4 2 8 8 C 1.34784 * 119.99847 * 179.97438 * 7 6 4 9 9 O 1.21275 * 119.99725 * 0.02562 * 8 7 6 10 10 C 1.50694 * 119.99819 * 179.97438 * 8 7 6 11 11 S 1.81003 * 109.47056 * 180.02562 * 10 8 7 12 12 C 1.76205 * 99.99935 * 180.02562 * 11 10 8 13 13 H 1.07996 * 119.99796 * 0.02562 * 12 11 10 14 14 C 1.38801 * 119.99864 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99941 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00044 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46852 * 60.00134 * 16 14 12 18 18 H 1.48492 * 109.47284 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47064 * 300.00283 * 16 14 12 20 20 N 1.46900 * 109.47040 * 174.29840 * 4 2 1 21 21 C 1.46898 * 111.00381 * 279.28971 * 20 4 2 22 22 C 1.50696 * 109.47210 * 185.10616 * 21 20 4 23 23 C 1.35323 * 126.12708 * 94.68599 * 22 21 20 24 24 C 1.39875 * 107.91573 * 179.90584 * 23 22 21 25 25 N 1.30835 * 108.20468 * 0.36388 * 24 23 22 26 26 N 1.34951 * 126.12801 * 274.99909 * 22 21 20 27 27 C 1.46502 * 126.03378 * 359.93725 * 26 22 21 28 28 H 1.09004 * 109.47364 * 305.14632 * 1 2 3 29 29 H 1.08995 * 109.47174 * 65.14813 * 1 2 3 30 30 H 1.09001 * 109.47018 * 185.14831 * 1 2 3 31 31 H 1.08992 * 109.47185 * 239.99525 * 2 1 3 32 32 H 1.08998 * 109.46872 * 54.76729 * 3 2 1 33 33 H 1.08995 * 109.46776 * 174.76657 * 3 2 1 34 34 H 1.08997 * 109.47121 * 294.76970 * 3 2 1 35 35 H 1.09000 * 109.47188 * 64.99213 * 6 4 2 36 36 H 1.09003 * 109.46599 * 305.00220 * 6 4 2 37 37 H 0.97001 * 120.00215 * 0.02562 * 7 6 4 38 38 H 1.09003 * 109.47842 * 300.00504 * 10 8 7 39 39 H 1.08999 * 109.47158 * 60.00882 * 10 8 7 40 40 H 0.96999 * 119.99999 * 180.02562 * 15 14 12 41 41 H 1.00903 * 110.99674 * 43.24465 * 20 4 2 42 42 H 1.09003 * 109.47068 * 305.10451 * 21 20 4 43 43 H 1.08998 * 109.47022 * 65.09950 * 21 20 4 44 44 H 1.07991 * 126.04152 * 0.03432 * 23 22 21 45 45 H 1.07994 * 125.89431 * 180.14485 * 24 23 22 46 46 H 1.09004 * 109.46725 * 90.00253 * 27 26 22 47 47 H 1.08995 * 109.46946 * 210.00066 * 27 26 22 48 48 H 1.08994 * 109.47482 * 330.00642 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5957 -1.7152 1.3019 6 6 1.6502 0.0780 2.4944 7 7 2.2396 -0.5478 3.6806 8 6 2.0298 -0.0124 4.8996 9 8 1.3526 0.9871 5.0144 10 6 2.6356 -0.6565 6.1199 11 16 2.1747 0.2891 7.5929 12 6 2.9936 -0.6578 8.8329 13 1 3.5633 -1.5324 8.5560 14 6 2.9072 -0.2789 10.1654 15 7 2.2131 0.7875 10.5028 16 14 3.7747 -1.2830 11.4801 17 1 5.2341 -1.3015 11.2062 18 1 3.5281 -0.6737 12.8116 19 1 3.2511 -2.6726 11.4675 20 7 3.5025 -0.8415 1.1825 21 6 3.8996 -1.9691 0.3289 22 6 5.3960 -2.1385 0.3843 23 6 6.0744 -2.9755 1.2030 24 6 7.4392 -2.8276 0.9346 25 7 7.5757 -1.9282 -0.0057 26 7 6.2999 -1.4783 -0.3696 27 6 5.9999 -0.4697 -1.3889 28 1 -0.3634 0.5916 0.8403 29 1 -0.3633 0.4319 -0.9324 30 1 -0.3633 -1.0235 0.0922 31 1 1.8933 -0.5139 -0.8899 32 1 1.6021 1.9827 0.8394 33 1 3.1259 1.4439 0.0937 34 1 1.7552 1.9286 -0.9331 35 1 0.5647 0.0918 2.5923 36 1 2.0195 1.0993 2.4009 37 1 2.7816 -1.3471 3.5887 38 1 2.2657 -1.6775 6.2135 39 1 3.7211 -0.6709 6.0221 40 1 2.1530 1.0525 11.4339 41 1 3.9219 0.0190 0.8633 42 1 3.4175 -2.8803 0.6830 43 1 3.5940 -1.7721 -0.6987 44 1 5.6389 -3.6417 1.9330 45 1 8.2418 -3.3608 1.4222 46 1 5.9817 0.5181 -0.9283 47 1 6.7671 -0.4958 -2.1626 48 1 5.0276 -0.6809 -1.8339 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732552935.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:56 Heat of formation + Delta-G solvation = 34.788771 kcal Electronic energy + Delta-G solvation = -27130.568920 eV Core-core repulsion = 23348.327743 eV Total energy + Delta-G solvation = -3782.241177 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.48977 -39.59812 -38.28631 -34.62059 -33.90659 -33.37035 -32.37300 -30.82988 -29.67091 -27.70732 -27.44823 -27.03389 -25.46232 -24.96132 -23.47820 -21.41782 -20.31283 -20.12735 -19.70026 -17.76130 -17.24214 -16.56478 -16.34061 -16.09204 -15.54114 -15.44438 -14.81448 -14.75706 -14.70573 -14.59462 -14.19808 -13.90866 -13.66707 -13.41901 -13.28279 -13.18776 -12.91656 -12.87558 -12.69029 -12.49253 -12.46004 -12.23809 -12.01625 -11.65311 -11.51665 -11.24353 -10.99404 -10.98825 -10.93552 -10.81648 -10.71591 -9.76461 -9.59786 -9.29505 -9.00815 -8.92532 -8.73316 -8.66925 -8.16678 -6.43162 -6.16214 -3.85961 1.54555 2.21632 2.61196 3.13235 3.23932 3.27682 3.31557 3.37059 3.69415 3.86892 4.19276 4.22054 4.26257 4.33154 4.42589 4.51000 4.57211 4.71197 4.86779 4.90033 4.97182 5.03472 5.06115 5.18066 5.18740 5.27332 5.29485 5.43287 5.44697 5.49622 5.52634 5.60892 5.64385 5.68488 5.85751 5.89801 5.90664 5.95928 6.00787 6.25259 6.42201 6.43037 6.71776 6.76300 6.89569 7.45748 7.64896 7.92948 8.40765 8.77247 9.29017 10.91198 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010334 B = 0.002615 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.761088 B =10703.177138 C =12886.219002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.155 4.155 4 C 0.079 3.921 5 H 0.090 0.910 6 C 0.131 3.869 7 N -0.725 5.725 8 C 0.530 3.470 9 O -0.525 6.525 10 C -0.151 4.151 11 S -0.062 6.062 12 C -0.534 4.534 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.869 5.869 16 Si 0.918 3.082 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 N -0.674 5.674 21 C 0.123 3.877 22 C 0.085 3.915 23 C -0.250 4.250 24 C 0.046 3.954 25 N -0.298 5.298 26 N -0.373 5.373 27 C 0.098 3.902 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.403 0.597 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.345 0.655 42 H 0.101 0.899 43 H 0.042 0.958 44 H 0.149 0.851 45 H 0.183 0.817 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -6.310 -28.752 29.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.213 4.213 4 C -0.031 4.031 5 H 0.108 0.892 6 C 0.006 3.994 7 N -0.379 5.379 8 C 0.316 3.684 9 O -0.401 6.401 10 C -0.302 4.302 11 S 0.164 5.836 12 C -0.682 4.682 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.504 5.504 16 Si 0.744 3.256 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.200 1.200 20 N -0.306 5.306 21 C -0.008 4.008 22 C -0.043 4.043 23 C -0.280 4.280 24 C -0.140 4.140 25 N -0.119 5.119 26 N -0.157 5.157 27 C -0.043 4.043 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.238 0.762 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.165 0.835 42 H 0.119 0.881 43 H 0.060 0.940 44 H 0.167 0.833 45 H 0.200 0.800 46 H 0.093 0.907 47 H 0.108 0.892 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.346 -4.121 -28.675 29.064 hybrid contribution 0.952 -2.214 0.242 2.422 sum 3.298 -6.335 -28.433 29.316 Atomic orbital electron populations 1.21855 0.94141 1.02252 1.02423 1.21744 0.97350 0.97063 0.98154 1.21970 1.00685 0.95855 1.02761 1.21975 0.87138 0.99978 0.93977 0.89197 1.21325 0.98054 0.96769 0.83220 1.45795 1.54764 1.31940 1.05438 1.20273 0.80131 0.84113 0.83861 1.90684 1.38494 1.24887 1.85992 1.23505 1.03678 1.04356 0.98658 1.85355 1.68174 1.36841 0.93191 1.22841 1.37070 1.14920 0.93408 0.90997 1.24987 0.95356 0.95382 0.97878 1.70014 1.38464 1.23571 1.18377 0.86234 0.79772 0.79833 0.79727 1.19934 1.20870 1.19956 1.60556 1.08189 1.07454 1.54439 1.20499 0.87811 0.96625 0.95832 1.20877 0.92500 0.95987 0.94923 1.21284 0.92996 1.07555 1.06148 1.23877 0.97398 0.96680 0.96013 1.77374 1.00095 1.16143 1.18291 1.48455 1.03966 1.32440 1.30815 1.21824 1.02458 0.89944 0.90098 0.91703 0.92568 0.92412 0.91182 0.91253 0.92934 0.92344 0.91194 0.91472 0.76177 0.89409 0.89281 0.92203 0.83467 0.88112 0.93984 0.83327 0.79969 0.90701 0.89232 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.84 37.16 0.33 -0.55 16 2 C -0.12 -0.68 2.77 -90.62 -0.25 -0.93 16 3 C -0.16 -0.94 8.41 37.16 0.31 -0.63 16 4 C 0.08 0.55 1.95 -67.71 -0.13 0.42 16 5 H 0.09 0.58 7.79 -51.93 -0.40 0.18 16 6 C 0.13 1.43 4.67 -4.05 -0.02 1.41 16 7 N -0.72 -9.79 5.39 -60.30 -0.32 -10.11 16 8 C 0.53 10.09 7.85 -10.98 -0.09 10.00 16 9 O -0.53 -12.07 15.86 5.56 0.09 -11.98 16 10 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 11 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 12 C -0.53 -15.46 9.50 30.94 0.29 -15.17 16 13 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 14 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 15 N -0.87 -26.53 13.22 55.49 0.73 -25.80 16 16 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 N -0.67 -4.80 5.64 -107.99 -0.61 -5.40 16 21 C 0.12 0.75 5.65 -4.98 -0.03 0.72 16 22 C 0.08 0.73 6.49 -82.26 -0.53 0.20 16 23 C -0.25 -2.37 10.72 -40.01 -0.43 -2.80 16 24 C 0.05 0.46 12.03 -17.36 -0.21 0.25 16 25 N -0.30 -3.42 12.58 30.62 0.39 -3.04 16 26 N -0.37 -3.45 4.01 -63.89 -0.26 -3.71 16 27 C 0.10 0.54 11.27 59.85 0.67 1.21 16 28 H 0.06 0.46 6.96 -51.93 -0.36 0.10 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.33 7.14 -51.93 -0.37 -0.05 16 32 H 0.07 0.53 6.55 -51.93 -0.34 0.19 16 33 H 0.05 0.30 6.31 -51.93 -0.33 -0.03 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.81 6.95 -51.93 -0.36 0.45 16 36 H 0.07 0.81 6.17 -51.93 -0.32 0.49 16 37 H 0.40 4.67 8.14 -40.82 -0.33 4.34 16 38 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 39 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.34 2.53 6.65 -39.29 -0.26 2.27 16 42 H 0.10 0.55 7.95 -51.93 -0.41 0.14 16 43 H 0.04 0.20 6.31 -51.93 -0.33 -0.13 16 44 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.27 7.15 -51.93 -0.37 -0.10 16 LS Contribution 403.23 15.07 6.08 6.08 Total: -1.00 -36.78 403.23 -8.64 -45.41 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -7.54 Total: 2.58 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 0.05 Total: -6.76 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.07 Total: -48.06 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.78 -8.64 -45.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732552935.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.199 kcal (2) G-P(sol) polarization free energy of solvation -36.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds