Wall clock time and date at job start Sat Apr 11 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 N 1.46501 * 109.46952 * 119.99846 * 2 1 3 5 5 C 1.34953 * 126.03725 * 275.00080 * 4 2 1 6 6 C 1.35312 * 107.74266 * 180.20624 * 5 4 2 7 7 C 1.39863 * 107.92527 * 359.64076 * 6 5 4 8 8 C 1.50703 * 125.90145 * 180.14385 * 7 6 5 9 9 N 1.46905 * 109.46965 * 95.23369 * 8 7 6 10 10 C 1.46899 * 110.99778 * 293.95024 * 9 8 7 11 11 C 1.46900 * 110.99532 * 169.99907 * 9 8 7 12 12 C 1.52998 * 109.46672 * 189.99455 * 11 9 8 13 13 N 1.46507 * 109.47059 * 180.02562 * 12 11 9 14 14 C 1.34781 * 119.99849 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00338 * 0.02562 * 14 13 12 16 16 C 1.50694 * 119.99509 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.46949 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00032 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00346 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99982 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99762 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99875 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46949 * 90.00551 * 22 20 18 24 24 H 1.48500 * 109.46607 * 210.00415 * 22 20 18 25 25 H 1.48494 * 109.47160 * 330.00276 * 22 20 18 26 26 N 1.30837 * 108.19940 * 0.36269 * 7 6 5 27 27 H 1.09000 * 109.46888 * 60.00177 * 1 2 3 28 28 H 1.08997 * 109.47606 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46673 * 300.00549 * 1 2 3 30 30 H 1.08993 * 109.46980 * 239.99479 * 2 1 3 31 31 H 1.09005 * 109.46871 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47097 * 299.99695 * 3 2 1 33 33 H 1.08999 * 109.47466 * 60.00301 * 3 2 1 34 34 H 1.08002 * 126.12372 * 359.93597 * 5 4 2 35 35 H 1.08008 * 126.03698 * 179.76435 * 6 5 4 36 36 H 1.09001 * 109.47131 * 215.23144 * 8 7 6 37 37 H 1.08998 * 109.46844 * 335.23437 * 8 7 6 38 38 H 1.09004 * 109.47051 * 60.00371 * 10 9 8 39 39 H 1.09005 * 109.47138 * 179.97438 * 10 9 8 40 40 H 1.08999 * 109.47435 * 300.00307 * 10 9 8 41 41 H 1.08993 * 109.47542 * 309.99871 * 11 9 8 42 42 H 1.09002 * 109.46862 * 70.00066 * 11 9 8 43 43 H 1.09000 * 109.47880 * 300.00544 * 12 11 9 44 44 H 1.09002 * 109.46978 * 60.00682 * 12 11 9 45 45 H 0.96993 * 119.99721 * 0.02562 * 13 12 11 46 46 H 1.09000 * 109.47671 * 299.99689 * 16 14 13 47 47 H 1.09001 * 109.47580 * 59.99925 * 16 14 13 48 48 H 0.97004 * 119.99419 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1932 -0.1392 2.4155 6 6 2.6607 -1.1040 3.2411 7 6 2.7676 -2.2873 2.5033 8 6 3.2453 -3.6164 3.0290 9 7 2.0887 -4.4297 3.4276 10 6 1.3934 -3.8298 4.5742 11 6 2.4927 -5.8113 3.7209 12 6 1.2461 -6.6826 3.8873 13 7 1.6489 -8.0604 4.1804 14 6 0.7120 -9.0112 4.3668 15 8 -0.4645 -8.7264 4.2914 16 6 1.1264 -10.4282 4.6688 17 16 -0.3483 -11.4591 4.8655 18 6 0.4083 -13.0148 5.2002 19 1 1.4849 -13.0964 5.2305 20 6 -0.3791 -14.1358 5.4240 21 7 0.1861 -15.2978 5.6745 22 14 -2.2411 -13.9948 5.3709 23 1 -2.7170 -14.2434 3.9864 24 1 -2.8397 -14.9980 6.2877 25 1 -2.6466 -12.6312 5.7964 26 7 2.3856 -2.0400 1.2766 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8900 34 1 1.9994 0.8890 2.6830 35 1 2.9059 -0.9822 4.2859 36 1 3.8036 -4.1359 2.2501 37 1 3.8907 -3.4549 3.8924 38 1 1.0439 -2.8328 4.3061 39 1 0.5412 -4.4517 4.8483 40 1 2.0790 -3.7596 5.4187 41 1 3.0973 -6.1952 2.8994 42 1 3.0757 -5.8316 4.6416 43 1 0.6413 -6.2987 4.7088 44 1 0.6630 -6.6623 2.9665 45 1 2.5898 -8.2882 4.2403 46 1 1.7319 -10.8126 3.8480 47 1 1.7087 -10.4481 5.5901 48 1 -0.3643 -16.0811 5.8312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753043026.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:01 Heat of formation + Delta-G solvation = 43.848798 kcal Electronic energy + Delta-G solvation = -25782.997493 eV Core-core repulsion = 22001.149188 eV Total energy + Delta-G solvation = -3781.848304 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61373 -39.32691 -38.00414 -36.19261 -34.47557 -32.41365 -31.48349 -30.39311 -29.98004 -28.11044 -27.96720 -27.68602 -25.60128 -24.67644 -22.92388 -21.44800 -20.55973 -20.40201 -19.89281 -17.83373 -17.49759 -16.60375 -16.27547 -16.05524 -15.59664 -15.46256 -15.13462 -14.96686 -14.74900 -14.59967 -14.11936 -13.96470 -13.73022 -13.65592 -13.38283 -13.13650 -13.07687 -12.77929 -12.77106 -12.62177 -12.26287 -12.08025 -12.00289 -11.87572 -11.69995 -11.66684 -11.26688 -11.23793 -10.98196 -10.82387 -10.57563 -9.83436 -9.61895 -9.48373 -8.98687 -8.91260 -8.89712 -8.64920 -8.46774 -6.88732 -6.26573 -3.97943 1.57863 2.08858 2.37715 2.79846 3.03228 3.28852 3.36006 3.53264 3.61497 3.92058 3.99157 4.26653 4.35677 4.35984 4.40725 4.46159 4.63590 4.77567 4.78695 4.85059 4.88425 4.99658 5.03725 5.06834 5.12644 5.19934 5.22097 5.25076 5.30293 5.35180 5.37709 5.39742 5.54211 5.57843 5.70085 5.74342 5.78428 5.86008 5.95089 6.04948 6.30934 6.52596 6.66041 6.71005 6.74547 7.47420 7.65494 7.96541 8.44023 8.54439 9.19822 10.82652 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.028475 B = 0.001515 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.081487 B =18472.201868 C =18965.519998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.154 3.846 3 C -0.164 4.164 4 N -0.367 5.367 5 C 0.053 3.947 6 C -0.269 4.269 7 C 0.080 3.920 8 C 0.137 3.863 9 N -0.531 5.531 10 C 0.018 3.982 11 C 0.047 3.953 12 C 0.125 3.875 13 N -0.737 5.737 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 N -0.273 5.273 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.169 0.831 35 H 0.144 0.856 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.029 0.971 41 H 0.083 0.917 42 H 0.043 0.957 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.399 0.601 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.472 36.628 -8.019 38.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.053 3.947 3 C -0.222 4.222 4 N -0.150 5.150 5 C -0.093 4.093 6 C -0.298 4.298 7 C -0.087 4.087 8 C 0.008 3.992 9 N -0.256 5.256 10 C -0.130 4.130 11 C -0.082 4.082 12 C 0.000 4.000 13 N -0.392 5.392 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 N -0.095 5.095 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.186 0.814 35 H 0.161 0.839 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.232 0.768 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.918 36.510 -9.799 38.263 hybrid contribution 1.733 -0.170 1.647 2.397 sum 7.651 36.341 -8.153 38.022 Atomic orbital electron populations 1.22243 0.93475 1.03630 1.03000 1.21266 0.94936 0.92603 0.85943 1.22197 1.02277 0.94055 1.03678 1.48891 1.50385 1.07305 1.08418 1.22391 1.01224 0.99826 0.85839 1.21372 1.14484 0.92664 1.01326 1.22000 0.99632 0.95695 0.91376 1.20343 0.91116 0.88340 0.99423 1.61740 1.25373 1.01236 1.37280 1.22536 0.98803 1.00830 0.90801 1.22251 0.96809 0.88287 1.00821 1.21204 0.96177 0.80516 1.02094 1.45872 1.09833 1.08719 1.74766 1.20249 0.85752 0.86494 0.75821 1.90705 1.17514 1.82041 1.49051 1.23275 1.04780 0.94084 1.05288 1.84799 1.08218 1.05238 1.93329 1.22329 0.96716 0.92024 1.55831 0.89392 1.24710 0.99223 0.94125 0.93212 1.69943 1.36253 0.99497 1.46055 0.86735 0.85125 0.80682 0.79316 1.19204 1.19960 1.15916 1.77376 1.19583 0.92520 1.20050 0.90453 0.91341 0.91948 0.87963 0.91500 0.89909 0.91551 0.81395 0.83867 0.89209 0.92557 0.90940 0.90782 0.95285 0.89840 0.93859 0.91551 0.90667 0.76774 0.88458 0.88467 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 9.52 37.16 0.35 -0.46 16 2 C 0.15 0.85 3.93 -67.93 -0.27 0.58 16 3 C -0.16 -0.47 8.83 37.16 0.33 -0.15 16 4 N -0.37 -3.08 3.53 -54.86 -0.19 -3.27 16 5 C 0.05 0.37 10.59 -17.22 -0.18 0.19 16 6 C -0.27 -2.15 9.77 -40.02 -0.39 -2.54 16 7 C 0.08 0.79 5.92 -82.41 -0.49 0.30 16 8 C 0.14 1.16 5.53 -4.97 -0.03 1.13 16 9 N -0.53 -5.06 4.75 -244.36 -1.16 -6.22 16 10 C 0.02 0.16 9.13 60.06 0.55 0.71 16 11 C 0.05 0.41 5.07 -3.82 -0.02 0.39 16 12 C 0.12 1.49 5.61 -4.04 -0.02 1.47 16 13 N -0.74 -9.58 5.56 -60.29 -0.33 -9.91 16 14 C 0.53 9.66 7.85 -10.99 -0.09 9.58 16 15 O -0.52 -11.56 15.86 5.56 0.09 -11.48 16 16 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 17 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 18 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 19 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 20 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 21 N -0.88 -26.76 13.97 55.49 0.78 -25.99 16 22 Si 0.86 22.02 27.74 -169.99 -4.72 17.31 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 26 N -0.27 -3.08 12.58 33.67 0.42 -2.65 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.07 0.15 7.16 -51.93 -0.37 -0.22 16 34 H 0.17 0.63 7.26 -52.49 -0.38 0.25 16 35 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 36 H 0.09 0.74 7.93 -51.93 -0.41 0.33 16 37 H 0.06 0.39 8.12 -51.93 -0.42 -0.04 16 38 H 0.07 0.66 6.56 -51.93 -0.34 0.32 16 39 H 0.07 0.71 6.30 -51.93 -0.33 0.38 16 40 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 42 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 43 H 0.07 0.85 6.47 -51.93 -0.34 0.52 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.40 3.89 8.47 -40.82 -0.35 3.54 16 46 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 47 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 48 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 407.06 15.07 6.13 6.13 Total: -1.00 -36.75 407.06 -8.79 -45.54 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -8.00 Total: -0.68 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 0.18 Total: -3.13 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.49 Total: -48.04 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.72 Total: 17.31 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.75 -8.79 -45.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753043026.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.390 kcal (2) G-P(sol) polarization free energy of solvation -36.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds