Wall clock time and date at job start Sat Apr 11 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 N 1.46501 * 109.46952 * 119.99846 * 2 1 3 5 5 C 1.34953 * 126.03725 * 275.00080 * 4 2 1 6 6 C 1.35312 * 107.74266 * 180.20624 * 5 4 2 7 7 C 1.39863 * 107.92527 * 359.64076 * 6 5 4 8 8 C 1.50703 * 125.90145 * 180.14385 * 7 6 5 9 9 N 1.46905 * 109.46965 * 95.23369 * 8 7 6 10 10 C 1.46899 * 110.99778 * 293.95024 * 9 8 7 11 11 C 1.46900 * 110.99532 * 169.99907 * 9 8 7 12 12 C 1.52998 * 109.46672 * 189.99455 * 11 9 8 13 13 N 1.46507 * 109.47059 * 180.02562 * 12 11 9 14 14 C 1.34781 * 119.99849 * 180.02562 * 13 12 11 15 15 O 1.21280 * 120.00338 * 0.02562 * 14 13 12 16 16 C 1.50694 * 119.99509 * 180.02562 * 14 13 12 17 17 S 1.81001 * 109.46949 * 179.97438 * 16 14 13 18 18 C 1.76200 * 100.00032 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00346 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99982 * 180.02562 * 18 17 16 21 21 N 1.31630 * 119.99762 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99875 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46949 * 90.00551 * 22 20 18 24 24 H 1.48500 * 109.46607 * 210.00415 * 22 20 18 25 25 H 1.48494 * 109.47160 * 330.00276 * 22 20 18 26 26 N 1.30837 * 108.19940 * 0.36269 * 7 6 5 27 27 H 1.09000 * 109.46888 * 60.00177 * 1 2 3 28 28 H 1.08997 * 109.47606 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46673 * 300.00549 * 1 2 3 30 30 H 1.08993 * 109.46980 * 239.99479 * 2 1 3 31 31 H 1.09005 * 109.46871 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47097 * 299.99695 * 3 2 1 33 33 H 1.08999 * 109.47466 * 60.00301 * 3 2 1 34 34 H 1.08002 * 126.12372 * 359.93597 * 5 4 2 35 35 H 1.08008 * 126.03698 * 179.76435 * 6 5 4 36 36 H 1.09001 * 109.47131 * 215.23144 * 8 7 6 37 37 H 1.08998 * 109.46844 * 335.23437 * 8 7 6 38 38 H 1.09004 * 109.47051 * 60.00371 * 10 9 8 39 39 H 1.09005 * 109.47138 * 179.97438 * 10 9 8 40 40 H 1.08999 * 109.47435 * 300.00307 * 10 9 8 41 41 H 1.08993 * 109.47542 * 309.99871 * 11 9 8 42 42 H 1.09002 * 109.46862 * 70.00066 * 11 9 8 43 43 H 1.09000 * 109.47880 * 300.00544 * 12 11 9 44 44 H 1.09002 * 109.46978 * 60.00682 * 12 11 9 45 45 H 0.96993 * 119.99721 * 0.02562 * 13 12 11 46 46 H 1.09000 * 109.47671 * 299.99689 * 16 14 13 47 47 H 1.09001 * 109.47580 * 59.99925 * 16 14 13 48 48 H 0.97004 * 119.99419 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1932 -0.1392 2.4155 6 6 2.6607 -1.1040 3.2411 7 6 2.7676 -2.2873 2.5033 8 6 3.2453 -3.6164 3.0290 9 7 2.0887 -4.4297 3.4276 10 6 1.3934 -3.8298 4.5742 11 6 2.4927 -5.8113 3.7209 12 6 1.2461 -6.6826 3.8873 13 7 1.6489 -8.0604 4.1804 14 6 0.7120 -9.0112 4.3668 15 8 -0.4645 -8.7264 4.2914 16 6 1.1264 -10.4282 4.6688 17 16 -0.3483 -11.4591 4.8655 18 6 0.4083 -13.0148 5.2002 19 1 1.4849 -13.0964 5.2305 20 6 -0.3791 -14.1358 5.4240 21 7 0.1861 -15.2978 5.6745 22 14 -2.2411 -13.9948 5.3709 23 1 -2.7170 -14.2434 3.9864 24 1 -2.8397 -14.9980 6.2877 25 1 -2.6466 -12.6312 5.7964 26 7 2.3856 -2.0400 1.2766 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8900 34 1 1.9994 0.8890 2.6830 35 1 2.9059 -0.9822 4.2859 36 1 3.8036 -4.1359 2.2501 37 1 3.8907 -3.4549 3.8924 38 1 1.0439 -2.8328 4.3061 39 1 0.5412 -4.4517 4.8483 40 1 2.0790 -3.7596 5.4187 41 1 3.0973 -6.1952 2.8994 42 1 3.0757 -5.8316 4.6416 43 1 0.6413 -6.2987 4.7088 44 1 0.6630 -6.6623 2.9665 45 1 2.5898 -8.2882 4.2403 46 1 1.7319 -10.8126 3.8480 47 1 1.7087 -10.4481 5.5901 48 1 -0.3643 -16.0811 5.8312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753043026.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:00 Heat of formation + Delta-G solvation = 16.735505 kcal Electronic energy + Delta-G solvation = -25784.173214 eV Core-core repulsion = 22001.149188 eV Total energy + Delta-G solvation = -3783.024025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.18986 -40.69022 -38.80361 -36.70816 -35.63776 -34.66446 -32.31415 -31.32768 -30.79821 -29.16978 -28.44960 -28.15778 -27.83682 -25.50522 -23.46993 -22.25827 -21.83203 -21.01866 -20.50769 -19.87088 -17.99597 -17.90672 -17.46714 -17.08186 -17.00856 -16.47566 -16.26691 -16.03245 -15.73671 -15.30595 -15.26089 -14.95270 -14.88315 -14.54049 -14.45500 -14.39584 -13.75906 -13.69498 -13.51557 -13.34220 -13.10569 -13.08209 -13.01813 -12.90310 -12.66869 -12.62318 -12.42277 -12.35535 -12.13162 -12.06767 -11.86026 -11.44573 -11.16589 -11.04763 -10.52615 -10.24032 -10.13674 -9.49848 -9.29902 -8.99098 -8.51027 -6.21718 0.97258 1.01503 1.31873 1.46929 1.54566 1.56725 1.60943 1.78161 2.21034 2.26505 2.71743 2.87370 3.18870 3.49270 3.78942 3.82997 3.93208 3.94425 3.97369 4.06573 4.09921 4.25426 4.26718 4.37632 4.47467 4.48444 4.54568 4.61361 4.64371 4.70415 4.77704 4.81487 4.84049 4.87800 4.93798 4.95380 5.09410 5.15211 5.17913 5.23039 5.37177 5.71440 5.72252 5.99619 6.02895 6.12089 6.22977 6.47481 6.86433 6.94421 7.20025 8.61305 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.028475 B = 0.001515 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.081487 B =18472.201868 C =18965.519998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 C -0.155 4.155 4 N -0.371 5.371 5 C 0.057 3.943 6 C -0.282 4.282 7 C 0.068 3.932 8 C 0.140 3.860 9 N -0.550 5.550 10 C 0.023 3.977 11 C 0.058 3.942 12 C 0.128 3.872 13 N -0.709 5.709 14 C 0.535 3.465 15 O -0.565 6.565 16 C -0.110 4.110 17 S -0.179 6.179 18 C -0.529 4.529 19 H 0.064 0.936 20 C 0.047 3.953 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.263 1.263 24 H -0.258 1.258 25 H -0.238 1.238 26 N -0.323 5.323 27 H 0.099 0.901 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.202 0.798 35 H 0.159 0.841 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.419 0.581 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.103 39.179 -7.849 40.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 C -0.213 4.213 4 N -0.155 5.155 5 C -0.089 4.089 6 C -0.311 4.311 7 C -0.099 4.099 8 C 0.011 3.989 9 N -0.275 5.275 10 C -0.124 4.124 11 C -0.071 4.071 12 C 0.004 3.996 13 N -0.364 5.364 14 C 0.320 3.680 15 O -0.443 6.443 16 C -0.261 4.261 17 S 0.048 5.952 18 C -0.676 4.676 19 H 0.082 0.918 20 C -0.158 4.158 21 N -0.554 5.554 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.182 1.182 25 H -0.162 1.162 26 N -0.146 5.146 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.219 0.781 35 H 0.177 0.823 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.256 0.744 46 H 0.133 0.867 47 H 0.135 0.865 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.611 39.077 -9.636 40.787 hybrid contribution 1.655 -0.823 1.538 2.404 sum 8.267 38.254 -8.099 39.966 Atomic orbital electron populations 1.22200 0.93122 1.02129 1.04268 1.21518 0.95212 0.93869 0.84881 1.22165 1.01836 0.92163 1.05173 1.49154 1.50061 1.06637 1.09601 1.22959 0.99734 1.01105 0.85084 1.21644 1.14967 0.92309 1.02227 1.22300 0.99526 0.96709 0.91354 1.20369 0.90760 0.87761 0.99997 1.61659 1.26344 1.01644 1.37848 1.22460 0.98690 1.00169 0.91122 1.22139 0.95141 0.87452 1.02319 1.21225 0.97669 0.79992 1.00726 1.45588 1.10099 1.08310 1.72395 1.19981 0.85672 0.86564 0.75763 1.90696 1.19476 1.82580 1.51597 1.23262 1.01869 0.93849 1.07086 1.84756 1.12289 1.04741 1.93463 1.22466 0.95815 0.93906 1.55452 0.91826 1.25539 1.03481 0.93886 0.92925 1.70017 1.38045 1.00314 1.47065 0.85882 0.80070 0.80787 0.79724 1.18784 1.18249 1.16169 1.77287 1.21461 0.94550 1.21314 0.88282 0.94138 0.91547 0.88948 0.92075 0.88083 0.90369 0.78107 0.82299 0.89382 0.90642 0.91492 0.91971 0.93727 0.88698 0.91791 0.92273 0.92778 0.74408 0.86671 0.86506 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.52 71.98 0.69 -0.78 16 2 C 0.15 1.50 3.93 44.99 0.18 1.67 16 3 C -0.16 -0.58 8.83 71.98 0.64 0.05 16 4 N -0.37 -6.02 3.53 -327.49 -1.15 -7.17 16 5 C 0.06 0.71 10.59 83.54 0.88 1.59 16 6 C -0.28 -4.11 9.77 21.99 0.21 -3.90 16 7 C 0.07 1.28 5.92 43.10 0.26 1.53 16 8 C 0.14 2.18 5.53 85.56 0.47 2.65 16 9 N -0.55 -9.78 4.75 -927.03 -4.41 -14.18 16 10 C 0.02 0.39 9.13 127.69 1.17 1.55 16 11 C 0.06 0.89 5.07 86.30 0.44 1.33 16 12 C 0.13 2.90 5.61 86.38 0.48 3.39 16 13 N -0.71 -16.96 5.56 -463.05 -2.57 -19.53 16 14 C 0.53 18.77 7.85 87.65 0.69 19.46 16 15 O -0.57 -25.08 15.86 -3.03 -0.05 -25.13 16 16 C -0.11 -4.14 6.16 71.23 0.44 -3.70 16 17 S -0.18 -9.17 18.55 -56.49 -1.05 -10.22 16 18 C -0.53 -31.00 10.04 67.96 0.68 -30.32 16 19 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 20 C 0.05 2.79 5.50 84.86 0.47 3.25 16 21 N -0.92 -56.07 13.97 21.65 0.30 -55.77 16 22 Si 0.91 45.49 27.74 68.60 1.90 47.40 16 23 H -0.26 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 25 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 26 N -0.32 -7.34 12.58 -47.39 -0.60 -7.93 16 27 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.08 0.12 7.16 -2.39 -0.02 0.11 16 34 H 0.20 0.91 7.26 -2.91 -0.02 0.89 16 35 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.09 1.36 7.93 -2.39 -0.02 1.34 16 37 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 38 H 0.07 1.17 6.56 -2.38 -0.02 1.15 16 39 H 0.06 1.15 6.30 -2.38 -0.02 1.14 16 40 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.09 1.28 7.93 -2.39 -0.02 1.26 16 42 H 0.06 0.76 8.12 -2.39 -0.02 0.74 16 43 H 0.06 1.47 6.47 -2.39 -0.02 1.46 16 44 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.42 6.83 8.47 -92.71 -0.79 6.05 16 46 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 47 H 0.12 3.98 8.14 -2.40 -0.02 3.96 16 48 H 0.28 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -81.33 407.06 0.19 -81.14 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.13 Total: 13.60 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 7.69 Total: -2.21 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -8.43 Total: -104.58 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.90 Total: 47.40 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.05 Total: -10.22 kcal Total: -81.33 0.19 -81.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753043026.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.871 kcal (2) G-P(sol) polarization free energy of solvation -81.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds