Wall clock time and date at job start Sat Apr 11 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 N 1.46492 * 109.47347 * 300.00258 * 3 2 1 5 5 C 1.36941 * 119.99908 * 179.72141 * 4 3 2 6 6 H 1.07999 * 120.00221 * 0.27555 * 5 4 3 7 7 C 1.38817 * 119.99639 * 180.28048 * 5 4 3 8 8 N 1.31619 * 120.00268 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99671 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47263 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47326 * 119.99585 * 9 7 5 12 12 H 1.48501 * 109.46870 * 239.99616 * 9 7 5 13 13 N 1.46503 * 109.47302 * 240.00395 * 2 1 3 14 14 C 1.34771 * 120.00375 * 173.96121 * 13 2 1 15 15 O 1.21489 * 119.99905 * 5.26953 * 14 13 2 16 16 C 1.48375 * 120.00136 * 185.27026 * 14 13 2 17 17 C 1.40210 * 119.22335 * 179.97438 * 16 14 13 18 18 C 1.36643 * 119.91379 * 179.97438 * 17 16 14 19 19 C 1.40556 * 118.10418 * 0.02562 * 18 17 16 20 20 C 1.40402 * 122.06408 * 180.02562 * 19 18 17 21 21 N 1.31254 * 119.87472 * 179.97438 * 20 19 18 22 22 C 1.32594 * 122.68121 * 359.96200 * 21 20 19 23 23 C 1.36105 * 121.99561 * 0.03707 * 22 21 20 24 24 C 1.40943 * 118.76710 * 359.97438 * 23 22 21 25 25 N 1.31980 * 119.22061 * 359.73227 * 16 14 13 26 26 C 1.52997 * 109.47430 * 120.00329 * 2 1 3 27 27 C 1.53005 * 117.49961 * 123.08058 * 26 2 1 28 28 C 1.53000 * 60.00015 * 252.51214 * 27 26 2 29 29 H 1.08991 * 109.47587 * 59.99598 * 1 2 3 30 30 H 1.09002 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47021 * 299.99130 * 1 2 3 32 32 H 1.08999 * 109.47163 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46470 * 60.00532 * 3 2 1 34 34 H 0.96998 * 120.00162 * 0.02562 * 4 3 2 35 35 H 0.96998 * 119.99747 * 179.97438 * 8 7 5 36 36 H 0.97005 * 119.99514 * 353.96178 * 13 2 1 37 37 H 1.08001 * 120.04259 * 0.02562 * 17 16 14 38 38 H 1.07992 * 120.94871 * 180.02562 * 18 17 16 39 39 H 1.07996 * 120.06223 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.00307 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.61551 * 180.02562 * 23 22 21 42 42 H 1.08997 * 115.54976 * 268.78548 * 26 2 1 43 43 H 1.09002 * 117.49970 * 359.97438 * 27 26 2 44 44 H 1.09003 * 117.50092 * 145.02058 * 27 26 2 45 45 H 1.09005 * 117.49909 * 252.51432 * 28 27 26 46 46 H 1.09000 * 117.49926 * 107.48924 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8778 3.4459 -1.4098 6 1 2.4987 3.9707 -0.6989 7 6 1.4102 4.1019 -2.5403 8 7 0.6538 3.4622 -3.4069 9 14 1.8557 5.8924 -2.8322 10 1 2.7105 6.3777 -1.7191 11 1 2.5945 6.0160 -4.1144 12 1 0.6156 6.7071 -2.8950 13 7 2.0184 -0.6905 -1.1962 14 6 3.3373 -0.7084 -1.4728 15 8 4.1300 -0.2358 -0.6828 16 6 3.8211 -1.3053 -2.7421 17 6 5.1967 -1.3147 -3.0135 18 6 5.6578 -1.8612 -4.1779 19 6 4.7186 -2.4013 -5.0734 20 6 5.1003 -2.9835 -6.2926 21 7 4.1869 -3.4754 -7.0966 22 6 2.8926 -3.4510 -6.8099 23 6 2.4201 -2.9094 -5.6540 24 6 3.3388 -2.3597 -4.7374 25 7 2.9469 -1.8191 -3.5869 26 6 2.0400 -0.7213 1.2492 27 6 2.9740 -1.9157 1.0435 28 6 1.5318 -2.1422 1.5015 29 1 -0.3634 0.5138 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 0.8901 34 1 0.9937 1.6619 -1.8344 35 1 0.3269 3.9208 -4.1966 36 1 1.3923 -1.1349 -1.7892 37 1 5.8909 -0.8913 -2.3028 38 1 6.7137 -1.8778 -4.4037 39 1 6.1436 -3.0265 -6.5684 40 1 2.1919 -3.8735 -7.5149 41 1 1.3610 -2.9017 -5.4429 42 1 2.2164 -0.0880 2.1186 43 1 3.2247 -2.1878 0.0182 44 1 3.7651 -2.0683 1.7776 45 1 1.3741 -2.4438 2.5370 46 1 0.8341 -2.5631 0.7775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753525367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:10 Heat of formation + Delta-G solvation = 87.210355 kcal Electronic energy + Delta-G solvation = -29861.474436 eV Core-core repulsion = 25946.062478 eV Total energy + Delta-G solvation = -3915.411958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43277 -40.30132 -38.27927 -36.92299 -34.98047 -33.97433 -33.28893 -32.01879 -31.06508 -30.58856 -29.50734 -26.17976 -25.70475 -24.36923 -23.69427 -22.86038 -22.09262 -21.57660 -21.17837 -19.02883 -18.72194 -18.11262 -17.36878 -17.25652 -16.17248 -15.95701 -15.43016 -15.12713 -14.99447 -14.62450 -14.44423 -14.29071 -14.06981 -13.77246 -13.42598 -13.27843 -13.12954 -12.90072 -12.70382 -12.40976 -12.12822 -12.06092 -11.88701 -11.29014 -11.07183 -10.90042 -10.86886 -10.78095 -10.75100 -10.28494 -10.16194 -10.03420 -9.93312 -9.72311 -9.65009 -9.42077 -9.32872 -8.77722 -8.70862 -8.59858 -6.81901 -5.71542 -2.97920 -0.09952 0.40705 1.65455 2.44282 3.17947 3.41817 3.45804 3.51743 3.53814 3.85739 3.99750 4.04448 4.11901 4.29186 4.47867 4.54198 4.62184 4.71149 4.87376 5.01849 5.11317 5.13007 5.17906 5.38603 5.43952 5.47775 5.54991 5.56625 5.65408 5.71544 5.72825 5.78959 5.86587 6.00696 6.05622 6.14921 6.18192 6.28762 6.30595 6.38514 6.40094 6.59353 6.66069 6.88843 7.12516 7.43814 7.66452 7.76707 7.88366 8.47609 8.48962 9.59130 10.17509 10.52916 11.51535 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008165 B = 0.004377 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3428.657722 B = 6395.950359 C = 8484.287100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.197 3.803 3 C 0.141 3.859 4 N -0.727 5.727 5 C -0.229 4.229 6 H 0.069 0.931 7 C -0.016 4.016 8 N -0.935 5.935 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 N -0.690 5.690 14 C 0.575 3.425 15 O -0.511 6.511 16 C 0.150 3.850 17 C -0.128 4.128 18 C -0.041 4.041 19 C -0.156 4.156 20 C 0.158 3.842 21 N -0.486 5.486 22 C 0.084 3.916 23 C -0.131 4.131 24 C 0.154 3.846 25 N -0.444 5.444 26 C -0.143 4.143 27 C -0.159 4.159 28 C -0.185 4.185 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.025 0.975 34 H 0.382 0.618 35 H 0.252 0.748 36 H 0.406 0.594 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.167 0.833 40 H 0.160 0.840 41 H 0.149 0.851 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 -17.939 0.465 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.112 3.888 3 C 0.013 3.987 4 N -0.371 5.371 5 C -0.361 4.361 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.584 5.584 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.221 1.221 12 H -0.220 1.220 13 N -0.341 5.341 14 C 0.359 3.641 15 O -0.385 6.385 16 C -0.006 4.006 17 C -0.149 4.149 18 C -0.069 4.069 19 C -0.160 4.160 20 C -0.016 4.016 21 N -0.194 5.194 22 C -0.060 4.060 23 C -0.151 4.151 24 C 0.026 3.974 25 N -0.156 5.156 26 C -0.162 4.162 27 C -0.196 4.196 28 C -0.222 4.222 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.217 0.783 35 H 0.062 0.938 36 H 0.242 0.758 37 H 0.173 0.827 38 H 0.169 0.831 39 H 0.184 0.816 40 H 0.177 0.823 41 H 0.167 0.833 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.501 -17.832 0.386 18.665 hybrid contribution 0.279 1.207 -0.235 1.261 sum 5.780 -16.625 0.151 17.602 Atomic orbital electron populations 1.21979 0.92870 1.01491 1.04155 1.20167 0.93966 0.92630 0.82053 1.21108 0.98851 0.87667 0.91120 1.42288 1.61352 1.10401 1.23104 1.19273 1.24928 0.87456 1.04428 0.91272 1.24685 1.00801 0.98119 0.97532 1.69666 1.39686 1.35813 1.13253 0.86152 0.77478 0.85296 0.77551 1.20578 1.22075 1.21962 1.45827 1.07056 1.54674 1.26571 1.17569 0.83266 0.79214 0.84061 1.90770 1.55090 1.45325 1.47335 1.21800 0.90765 0.93738 0.94251 1.21856 0.95939 0.98753 0.98345 1.21420 1.00006 0.93455 0.92053 1.19932 0.95113 1.02715 0.98276 1.23211 0.99504 0.90885 0.87997 1.67474 1.02373 1.16473 1.33088 1.22240 0.91918 0.96510 0.95316 1.21816 1.01014 0.98429 0.93875 1.18887 0.91041 0.95309 0.92168 1.67897 1.37350 1.08171 1.02163 1.22536 1.04085 0.90290 0.99332 1.22899 0.92518 1.02185 1.02010 1.22981 0.97879 0.99742 1.01610 0.90649 0.92783 0.90852 0.93116 0.95762 0.78340 0.93786 0.75840 0.82665 0.83077 0.81555 0.82258 0.83317 0.87234 0.89295 0.89442 0.89307 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.19 37.16 0.30 -1.92 16 2 C 0.20 3.26 0.55 -131.82 -0.07 3.19 16 3 C 0.14 2.97 4.83 -4.04 -0.02 2.95 16 4 N -0.73 -18.53 5.18 -59.91 -0.31 -18.84 16 5 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 6 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 8 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 9 Si 0.90 23.00 29.55 -169.99 -5.02 17.98 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 13 N -0.69 -11.30 4.17 -48.37 -0.20 -11.50 16 14 C 0.58 10.00 5.08 -12.09 -0.06 9.94 16 15 O -0.51 -9.79 12.20 5.38 0.07 -9.72 16 16 C 0.15 2.37 6.75 -82.89 -0.56 1.81 16 17 C -0.13 -1.69 9.54 -39.42 -0.38 -2.07 16 18 C -0.04 -0.44 9.92 -39.28 -0.39 -0.82 16 19 C -0.16 -1.85 5.75 -106.74 -0.61 -2.47 16 20 C 0.16 1.60 11.05 -16.98 -0.19 1.41 16 21 N -0.49 -5.55 10.30 -13.18 -0.14 -5.68 16 22 C 0.08 0.88 11.05 -17.99 -0.20 0.68 16 23 C -0.13 -1.54 10.08 -39.32 -0.40 -1.94 16 24 C 0.15 2.14 6.63 -84.86 -0.56 1.58 16 25 N -0.44 -6.84 9.51 -7.49 -0.07 -6.91 16 26 C -0.14 -2.05 4.82 -90.62 -0.44 -2.49 16 27 C -0.16 -2.18 8.30 -26.73 -0.22 -2.40 16 28 C -0.19 -2.21 9.68 -26.73 -0.26 -2.47 16 29 H 0.07 1.32 6.86 -51.93 -0.36 0.96 16 30 H 0.05 0.67 6.96 -51.93 -0.36 0.31 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 1.18 5.92 -51.93 -0.31 0.88 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.38 10.12 6.35 -40.82 -0.26 9.86 16 35 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.41 6.25 7.80 -40.82 -0.32 5.93 16 37 H 0.16 1.90 7.60 -52.49 -0.40 1.50 16 38 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 39 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 41 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 42 H 0.11 1.56 8.07 -51.93 -0.42 1.14 16 43 H 0.09 1.32 5.09 -51.93 -0.26 1.05 16 44 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.09 1.04 7.26 -51.93 -0.38 0.67 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -34.26 375.84 -9.58 -43.84 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -5.99 Total: 15.31 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -4.30 Total: -2.30 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: 0.01 Total: -70.77 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.26 -9.58 -43.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753525367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.049 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds