Wall clock time and date at job start Sat Apr 11 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 N 1.46492 * 109.47347 * 300.00258 * 3 2 1 5 5 C 1.36941 * 119.99908 * 179.72141 * 4 3 2 6 6 H 1.07999 * 120.00221 * 0.27555 * 5 4 3 7 7 C 1.38817 * 119.99639 * 180.28048 * 5 4 3 8 8 N 1.31619 * 120.00268 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99671 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47263 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47326 * 119.99585 * 9 7 5 12 12 H 1.48501 * 109.46870 * 239.99616 * 9 7 5 13 13 N 1.46503 * 109.47302 * 240.00395 * 2 1 3 14 14 C 1.34771 * 120.00375 * 173.96121 * 13 2 1 15 15 O 1.21489 * 119.99905 * 5.26953 * 14 13 2 16 16 C 1.48375 * 120.00136 * 185.27026 * 14 13 2 17 17 C 1.40210 * 119.22335 * 179.97438 * 16 14 13 18 18 C 1.36643 * 119.91379 * 179.97438 * 17 16 14 19 19 C 1.40556 * 118.10418 * 0.02562 * 18 17 16 20 20 C 1.40402 * 122.06408 * 180.02562 * 19 18 17 21 21 N 1.31254 * 119.87472 * 179.97438 * 20 19 18 22 22 C 1.32594 * 122.68121 * 359.96200 * 21 20 19 23 23 C 1.36105 * 121.99561 * 0.03707 * 22 21 20 24 24 C 1.40943 * 118.76710 * 359.97438 * 23 22 21 25 25 N 1.31980 * 119.22061 * 359.73227 * 16 14 13 26 26 C 1.52997 * 109.47430 * 120.00329 * 2 1 3 27 27 C 1.53005 * 117.49961 * 123.08058 * 26 2 1 28 28 C 1.53000 * 60.00015 * 252.51214 * 27 26 2 29 29 H 1.08991 * 109.47587 * 59.99598 * 1 2 3 30 30 H 1.09002 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47021 * 299.99130 * 1 2 3 32 32 H 1.08999 * 109.47163 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46470 * 60.00532 * 3 2 1 34 34 H 0.96998 * 120.00162 * 0.02562 * 4 3 2 35 35 H 0.96998 * 119.99747 * 179.97438 * 8 7 5 36 36 H 0.97005 * 119.99514 * 353.96178 * 13 2 1 37 37 H 1.08001 * 120.04259 * 0.02562 * 17 16 14 38 38 H 1.07992 * 120.94871 * 180.02562 * 18 17 16 39 39 H 1.07996 * 120.06223 * 359.97438 * 20 19 18 40 40 H 1.08003 * 119.00307 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.61551 * 180.02562 * 23 22 21 42 42 H 1.08997 * 115.54976 * 268.78548 * 26 2 1 43 43 H 1.09002 * 117.49970 * 359.97438 * 27 26 2 44 44 H 1.09003 * 117.50092 * 145.02058 * 27 26 2 45 45 H 1.09005 * 117.49909 * 252.51432 * 28 27 26 46 46 H 1.09000 * 117.49926 * 107.48924 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1332 -1.1961 5 6 1.8778 3.4459 -1.4098 6 1 2.4987 3.9707 -0.6989 7 6 1.4102 4.1019 -2.5403 8 7 0.6538 3.4622 -3.4069 9 14 1.8557 5.8924 -2.8322 10 1 2.7105 6.3777 -1.7191 11 1 2.5945 6.0160 -4.1144 12 1 0.6156 6.7071 -2.8950 13 7 2.0184 -0.6905 -1.1962 14 6 3.3373 -0.7084 -1.4728 15 8 4.1300 -0.2358 -0.6828 16 6 3.8211 -1.3053 -2.7421 17 6 5.1967 -1.3147 -3.0135 18 6 5.6578 -1.8612 -4.1779 19 6 4.7186 -2.4013 -5.0734 20 6 5.1003 -2.9835 -6.2926 21 7 4.1869 -3.4754 -7.0966 22 6 2.8926 -3.4510 -6.8099 23 6 2.4201 -2.9094 -5.6540 24 6 3.3388 -2.3597 -4.7374 25 7 2.9469 -1.8191 -3.5869 26 6 2.0400 -0.7213 1.2492 27 6 2.9740 -1.9157 1.0435 28 6 1.5318 -2.1422 1.5015 29 1 -0.3634 0.5138 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 0.8901 34 1 0.9937 1.6619 -1.8344 35 1 0.3269 3.9208 -4.1966 36 1 1.3923 -1.1349 -1.7892 37 1 5.8909 -0.8913 -2.3028 38 1 6.7137 -1.8778 -4.4037 39 1 6.1436 -3.0265 -6.5684 40 1 2.1919 -3.8735 -7.5149 41 1 1.3610 -2.9017 -5.4429 42 1 2.2164 -0.0880 2.1186 43 1 3.2247 -2.1878 0.0182 44 1 3.7651 -2.0683 1.7776 45 1 1.3741 -2.4438 2.5370 46 1 0.8341 -2.5631 0.7775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753525367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:09 Heat of formation + Delta-G solvation = 63.937548 kcal Electronic energy + Delta-G solvation = -29862.483620 eV Core-core repulsion = 25946.062478 eV Total energy + Delta-G solvation = -3916.421142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.42605 -41.51726 -39.28726 -38.14930 -36.61647 -35.14089 -34.65965 -33.39743 -32.50891 -31.50319 -31.10027 -27.72203 -26.89946 -25.55855 -25.24926 -23.75405 -23.15294 -23.03577 -22.44645 -20.36234 -19.71913 -19.27180 -19.21625 -18.27936 -17.35947 -17.09636 -16.95193 -16.35090 -16.15124 -15.89979 -15.61674 -15.37916 -15.36117 -15.12955 -15.01307 -14.61843 -14.35741 -14.05570 -13.81451 -13.57915 -13.44598 -13.33588 -13.28634 -13.01790 -12.84795 -12.41604 -12.30479 -12.11019 -12.01482 -11.80188 -11.79243 -11.50726 -11.18171 -11.00445 -10.97529 -10.70747 -10.43635 -10.43062 -9.96587 -9.58311 -8.95377 -7.96481 -5.22979 -1.04594 -0.53173 0.74730 1.38355 1.42606 1.43085 1.53509 1.98043 2.30996 2.53001 2.80537 2.97120 3.01192 3.36737 3.37250 3.44650 3.59068 3.61169 3.63839 3.78809 3.96870 3.98042 4.06968 4.15916 4.26661 4.33716 4.35886 4.52635 4.54107 4.65515 4.75599 4.79117 4.81379 4.84965 4.89462 4.93639 4.95559 5.06853 5.17461 5.26546 5.29459 5.30653 5.33119 5.46422 5.53918 5.64510 6.25594 6.34158 6.62955 6.83494 7.18253 7.32847 8.08439 8.34848 9.26789 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008165 B = 0.004377 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3428.657722 B = 6395.950359 C = 8484.287100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.204 3.796 3 C 0.142 3.858 4 N -0.732 5.732 5 C -0.239 4.239 6 H 0.067 0.933 7 C -0.072 4.072 8 N -0.966 5.966 9 Si 0.968 3.032 10 H -0.269 1.269 11 H -0.295 1.295 12 H -0.289 1.289 13 N -0.687 5.687 14 C 0.570 3.430 15 O -0.538 6.538 16 C 0.123 3.877 17 C -0.151 4.151 18 C -0.015 4.015 19 C -0.169 4.169 20 C 0.171 3.829 21 N -0.503 5.503 22 C 0.092 3.908 23 C -0.151 4.151 24 C 0.128 3.872 25 N -0.465 5.465 26 C -0.158 4.158 27 C -0.166 4.166 28 C -0.154 4.154 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.025 0.975 34 H 0.375 0.625 35 H 0.249 0.751 36 H 0.409 0.591 37 H 0.158 0.842 38 H 0.201 0.799 39 H 0.210 0.790 40 H 0.188 0.812 41 H 0.155 0.845 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.113 0.887 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.708 -19.268 -0.088 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.118 3.882 3 C 0.015 3.985 4 N -0.375 5.375 5 C -0.371 4.371 6 H 0.085 0.915 7 C -0.264 4.264 8 N -0.617 5.617 9 Si 0.798 3.202 10 H -0.194 1.194 11 H -0.223 1.223 12 H -0.216 1.216 13 N -0.338 5.338 14 C 0.355 3.645 15 O -0.415 6.415 16 C -0.031 4.031 17 C -0.172 4.172 18 C -0.042 4.042 19 C -0.173 4.173 20 C -0.003 4.003 21 N -0.210 5.210 22 C -0.051 4.051 23 C -0.171 4.171 24 C -0.001 4.001 25 N -0.178 5.178 26 C -0.178 4.178 27 C -0.203 4.203 28 C -0.191 4.191 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.209 0.791 35 H 0.058 0.942 36 H 0.245 0.755 37 H 0.175 0.825 38 H 0.218 0.782 39 H 0.226 0.774 40 H 0.205 0.795 41 H 0.172 0.828 42 H 0.128 0.872 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.131 0.869 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.476 -19.178 -0.135 20.242 hybrid contribution 0.033 1.544 -0.130 1.550 sum 6.509 -17.634 -0.265 18.799 Atomic orbital electron populations 1.21917 0.91654 1.03133 1.03000 1.20032 0.94746 0.90076 0.83355 1.21155 0.97456 0.90605 0.89325 1.42381 1.61162 1.09745 1.24221 1.19599 1.24352 0.88847 1.04339 0.91512 1.25450 1.01271 1.02178 0.97503 1.69816 1.40957 1.37302 1.13637 0.85144 0.77231 0.80526 0.77339 1.19399 1.22267 1.21625 1.45823 1.07040 1.54341 1.26595 1.17931 0.83233 0.78748 0.84561 1.90731 1.55651 1.46679 1.48393 1.21727 0.92133 0.95253 0.93992 1.21969 0.94872 1.00402 0.99919 1.21926 1.02042 0.90282 0.89966 1.20232 0.94498 1.03135 0.99405 1.23879 1.01179 0.88678 0.86544 1.67601 1.02795 1.17144 1.33504 1.22691 0.92346 0.95036 0.95001 1.21977 1.01288 0.99523 0.94343 1.19345 0.92868 0.95768 0.92088 1.67801 1.37879 1.09052 1.03022 1.22418 1.05894 0.91312 0.98171 1.22874 0.93897 1.01988 1.01562 1.23064 0.96329 0.96603 1.03086 0.93529 0.89704 0.90163 0.95330 0.95719 0.79148 0.94174 0.75476 0.82458 0.78249 0.77394 0.79497 0.82776 0.87207 0.90692 0.88887 0.86903 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 8.19 71.98 0.59 -3.61 16 2 C 0.20 6.86 0.55 3.60 0.00 6.86 16 3 C 0.14 6.23 4.83 86.38 0.42 6.64 16 4 N -0.73 -38.68 5.18 -343.46 -1.78 -40.46 16 5 C -0.24 -14.04 9.99 84.03 0.84 -13.20 16 6 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 7 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 8 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 9 Si 0.97 47.91 29.55 68.60 2.03 49.94 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 12 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 13 N -0.69 -23.41 4.17 -425.26 -1.77 -25.18 16 14 C 0.57 20.82 5.08 86.94 0.44 21.26 16 15 O -0.54 -21.68 12.20 -3.68 -0.04 -21.72 16 16 C 0.12 4.05 6.75 42.30 0.29 4.33 16 17 C -0.15 -3.99 9.54 22.38 0.21 -3.78 16 18 C -0.01 -0.28 9.92 22.46 0.22 -0.05 16 19 C -0.17 -3.72 5.75 -21.24 -0.12 -3.84 16 20 C 0.17 2.93 11.05 85.31 0.94 3.87 16 21 N -0.50 -10.19 10.30 -195.61 -2.02 -12.20 16 22 C 0.09 1.79 11.05 84.08 0.93 2.72 16 23 C -0.15 -3.51 10.08 22.44 0.23 -3.28 16 24 C 0.13 3.54 6.63 40.58 0.27 3.81 16 25 N -0.47 -14.89 9.51 -177.61 -1.69 -16.58 16 26 C -0.16 -4.50 4.82 -10.79 -0.05 -4.55 16 27 C -0.17 -4.49 8.30 30.60 0.25 -4.23 16 28 C -0.15 -3.36 9.68 30.60 0.30 -3.06 16 29 H 0.05 1.67 6.86 -2.39 -0.02 1.66 16 30 H 0.08 2.00 6.96 -2.39 -0.02 1.98 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.03 1.40 5.92 -2.39 -0.01 1.39 16 33 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.38 20.72 6.35 -92.71 -0.59 20.13 16 35 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.41 13.20 7.80 -92.70 -0.72 12.47 16 37 H 0.16 3.96 7.60 -2.91 -0.02 3.93 16 38 H 0.20 1.69 8.06 -2.91 -0.02 1.66 16 39 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 42 H 0.11 3.09 8.07 -2.39 -0.02 3.07 16 43 H 0.07 2.27 5.09 -2.39 -0.01 2.25 16 44 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 46 H 0.10 2.01 7.26 -2.39 -0.02 1.99 16 Total: -1.00 -76.85 375.84 0.96 -75.89 By element: Atomic # 1 Polarization: 44.55 SS G_CDS: -0.27 Total: 44.28 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 6.22 Total: 6.10 kcal Atomic # 7 Polarization: -147.51 SS G_CDS: -6.97 Total: -154.48 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.04 Total: -21.72 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -76.85 0.96 -75.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753525367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.827 kcal (2) G-P(sol) polarization free energy of solvation -76.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds