Wall clock time and date at job start Sat Apr 11 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 C 1.52999 * 109.47620 * 120.00391 * 2 1 3 5 5 H 1.08995 * 109.47526 * 185.49579 * 4 2 1 6 6 C 1.52999 * 109.47029 * 305.49480 * 4 2 1 7 7 N 1.46499 * 109.47401 * 174.99682 * 6 4 2 8 8 C 1.34776 * 120.00408 * 179.97438 * 7 6 4 9 9 O 1.21288 * 119.99627 * 0.02562 * 8 7 6 10 10 C 1.50688 * 120.00102 * 179.72642 * 8 7 6 11 11 S 1.81001 * 109.47308 * 180.02562 * 10 8 7 12 12 C 1.76195 * 100.00337 * 179.97438 * 11 10 8 13 13 H 1.08003 * 120.00206 * 0.02562 * 12 11 10 14 14 C 1.38799 * 120.00209 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99790 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00101 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46858 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46856 * 119.99815 * 16 14 12 19 19 H 1.48494 * 109.47123 * 239.99795 * 16 14 12 20 20 N 1.46899 * 109.46907 * 65.49216 * 4 2 1 21 21 C 1.46897 * 110.99960 * 85.64256 * 20 4 2 22 22 C 1.50700 * 109.47411 * 174.74255 * 21 20 4 23 23 N 1.30501 * 125.64837 * 269.69363 * 22 21 20 24 24 C 1.34126 * 109.25446 * 179.88960 * 23 22 21 25 25 C 1.34663 * 108.02252 * 0.36934 * 24 23 22 26 26 N 1.35048 * 125.65418 * 89.99314 * 22 21 20 27 27 C 1.46508 * 126.39338 * 359.94867 * 26 22 21 28 28 H 1.08997 * 109.47277 * 65.62802 * 1 2 3 29 29 H 1.09003 * 109.47117 * 185.63250 * 1 2 3 30 30 H 1.09006 * 109.46788 * 305.62921 * 1 2 3 31 31 H 1.09004 * 109.46935 * 240.00820 * 2 1 3 32 32 H 1.09010 * 109.46917 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47530 * 300.00150 * 3 2 1 34 34 H 1.09003 * 109.47031 * 60.00930 * 3 2 1 35 35 H 1.09004 * 109.47055 * 54.99655 * 6 4 2 36 36 H 1.08998 * 109.47037 * 294.99922 * 6 4 2 37 37 H 0.96998 * 119.99693 * 0.02562 * 7 6 4 38 38 H 1.09002 * 109.47310 * 299.99844 * 10 8 7 39 39 H 1.08996 * 109.47461 * 60.00311 * 10 8 7 40 40 H 0.97007 * 119.99533 * 180.02562 * 15 14 12 41 41 H 1.00904 * 111.00089 * 321.68715 * 20 4 2 42 42 H 1.09005 * 109.46772 * 294.73734 * 21 20 4 43 43 H 1.09002 * 109.47567 * 54.73956 * 21 20 4 44 44 H 1.08007 * 125.98899 * 180.11097 * 24 23 22 45 45 H 1.07998 * 126.59209 * 179.74507 * 25 24 23 46 46 H 1.08999 * 109.47079 * 89.99629 * 27 26 22 47 47 H 1.08997 * 109.46641 * 209.99490 * 27 26 22 48 48 H 1.09004 * 109.47008 * 330.00044 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1256 -0.6369 1.2997 6 6 1.4205 -0.0843 2.4946 7 7 1.8138 -0.8484 3.6811 8 6 1.3830 -0.4690 4.9005 9 8 0.6693 0.5049 5.0155 10 6 1.7826 -1.2586 6.1201 11 16 1.0509 -0.5042 7.5937 12 6 1.6626 -1.5972 8.8329 13 1 2.2916 -2.4302 8.5556 14 6 1.3370 -1.3872 10.1657 15 7 0.5707 -0.3717 10.5039 16 14 1.9861 -2.5456 11.4796 17 1 2.8188 -3.5981 10.8439 18 1 2.8108 -1.7813 12.4497 19 1 0.8453 -3.1777 12.1896 20 7 1.6617 -2.1393 1.1846 21 6 2.6528 -2.9146 0.4267 22 6 2.3012 -4.3786 0.4909 23 7 2.7173 -5.2218 1.3958 24 6 2.2032 -6.4341 1.1405 25 6 1.4462 -6.3403 0.0308 26 7 1.5079 -5.0366 -0.3818 27 6 0.8381 -4.4622 -1.5513 28 1 -0.3634 0.4241 -0.9360 29 1 -0.3633 -1.0227 0.1009 30 1 -0.3633 0.5987 0.8353 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 0.3343 -0.0891 2.4030 36 1 1.7725 0.9428 2.5908 37 1 2.3849 -1.6271 3.5891 38 1 1.4258 -2.2839 6.0221 39 1 2.8686 -1.2591 6.2130 40 1 0.3435 -0.2247 11.4354 41 1 0.7388 -2.2497 0.7917 42 1 2.6532 -2.5863 -0.6127 43 1 3.6421 -2.7594 0.8572 44 1 2.3708 -7.3295 1.7207 45 1 0.8965 -7.1401 -0.4430 46 1 1.4920 -4.5412 -2.4198 47 1 -0.0875 -5.0050 -1.7429 48 1 0.6115 -3.4130 -1.3614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753824194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:13 Heat of formation + Delta-G solvation = 21.285443 kcal Electronic energy + Delta-G solvation = -27145.815647 eV Core-core repulsion = 23362.988922 eV Total energy + Delta-G solvation = -3782.826725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.33919 -39.55487 -38.22605 -34.52113 -34.19761 -33.82524 -32.33188 -30.48336 -29.50871 -27.71113 -27.64313 -27.13561 -25.42536 -24.96459 -23.41046 -21.66437 -20.30664 -20.12632 -19.65662 -17.72763 -17.45417 -16.64103 -16.42158 -16.06012 -15.62457 -15.52166 -14.87316 -14.72155 -14.66403 -14.55191 -14.23887 -13.79829 -13.61274 -13.50335 -13.39014 -13.25340 -13.19305 -12.86146 -12.82136 -12.45164 -12.44169 -12.23662 -12.03847 -11.57026 -11.46811 -11.18270 -10.99216 -10.91261 -10.85707 -10.66219 -10.15384 -9.88144 -9.69998 -9.22679 -8.98294 -8.88500 -8.63489 -8.58950 -8.10787 -6.38222 -6.12492 -3.81393 1.69671 2.41429 2.88379 3.19273 3.28416 3.31304 3.35909 3.43467 3.75541 3.91403 4.14379 4.19242 4.30249 4.34702 4.44165 4.48197 4.56199 4.57518 4.74809 4.84275 4.94034 5.06566 5.14343 5.18208 5.22677 5.24080 5.29806 5.35818 5.47764 5.50776 5.53051 5.63999 5.67793 5.73125 5.89672 5.93790 5.94866 6.00335 6.08522 6.33757 6.49022 6.50578 6.81907 6.87011 6.97087 7.70141 7.90005 8.01252 8.45811 8.84549 9.33247 10.95059 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010408 B = 0.002634 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.651298 B =10629.299592 C =12854.181217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.149 4.149 4 C 0.080 3.920 5 H 0.090 0.910 6 C 0.132 3.868 7 N -0.724 5.724 8 C 0.531 3.469 9 O -0.527 6.527 10 C -0.151 4.151 11 S -0.064 6.064 12 C -0.531 4.531 13 H 0.073 0.927 14 C 0.072 3.928 15 N -0.869 5.869 16 Si 0.918 3.082 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.673 5.673 21 C 0.146 3.854 22 C 0.208 3.792 23 N -0.469 5.469 24 C -0.025 4.025 25 C -0.059 4.059 26 N -0.461 5.461 27 C 0.071 3.929 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.405 0.595 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.266 0.734 41 H 0.343 0.657 42 H 0.044 0.956 43 H 0.105 0.895 44 H 0.170 0.830 45 H 0.173 0.827 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 -6.487 -31.818 32.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.141 4.141 3 C -0.207 4.207 4 C -0.030 4.030 5 H 0.108 0.892 6 C 0.007 3.993 7 N -0.378 5.378 8 C 0.317 3.683 9 O -0.403 6.403 10 C -0.302 4.302 11 S 0.163 5.837 12 C -0.680 4.680 13 H 0.091 0.909 14 C -0.137 4.137 15 N -0.505 5.505 16 Si 0.744 3.256 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.306 5.306 21 C 0.016 3.984 22 C -0.054 4.054 23 N -0.187 5.187 24 C -0.174 4.174 25 C -0.192 4.192 26 N -0.145 5.145 27 C -0.071 4.071 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.240 0.760 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.163 0.837 42 H 0.062 0.938 43 H 0.123 0.877 44 H 0.188 0.812 45 H 0.190 0.810 46 H 0.095 0.905 47 H 0.106 0.894 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.034 -4.678 -30.349 30.775 hybrid contribution 0.593 -2.397 -1.044 2.680 sum 2.627 -7.075 -31.393 32.287 Atomic orbital electron populations 1.21967 0.94736 1.01836 1.02702 1.21734 0.96711 0.97694 0.98006 1.21866 1.01117 0.95175 1.02569 1.21958 1.00635 0.86401 0.94036 0.89230 1.21319 0.99934 0.94739 0.83279 1.45799 1.54044 1.32652 1.05349 1.20260 0.79515 0.84660 0.83877 1.90679 1.36324 1.27239 1.86042 1.23502 1.04898 1.03177 0.98585 1.85319 1.66150 1.38962 0.93267 1.22934 1.36453 1.15192 0.93382 0.90879 1.24989 0.94937 0.95864 0.97887 1.70041 1.34450 1.27919 1.18088 0.86127 0.78633 0.80178 0.80640 1.19559 1.20643 1.20640 1.60455 1.05201 1.08304 1.56597 1.20203 0.97762 0.83873 0.96585 1.23050 0.96662 0.96170 0.89563 1.70268 1.24314 1.00721 1.23411 1.22368 1.00677 0.96665 0.97649 1.22696 1.08428 0.86689 1.01367 1.45313 1.37690 1.08970 1.22521 1.22023 0.98301 1.00146 0.86678 0.92401 0.92906 0.91223 0.91250 0.92432 0.92540 0.91620 0.91501 0.91261 0.76018 0.89233 0.89396 0.92370 0.83658 0.93771 0.87655 0.81248 0.80950 0.90525 0.89405 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 8.41 37.16 0.31 -0.65 16 2 C -0.12 -0.70 2.78 -90.62 -0.25 -0.96 16 3 C -0.15 -0.92 8.96 37.16 0.33 -0.59 16 4 C 0.08 0.62 1.96 -67.71 -0.13 0.48 16 5 H 0.09 0.66 7.71 -51.93 -0.40 0.26 16 6 C 0.13 1.54 4.67 -4.04 -0.02 1.53 16 7 N -0.72 -10.62 5.39 -60.30 -0.32 -10.95 16 8 C 0.53 10.61 7.85 -10.99 -0.09 10.52 16 9 O -0.53 -12.48 15.86 5.55 0.09 -12.39 16 10 C -0.15 -3.29 6.16 36.00 0.22 -3.07 16 11 S -0.06 -1.80 20.57 -107.50 -2.21 -4.02 16 12 C -0.53 -15.74 9.50 30.94 0.29 -15.45 16 13 H 0.07 2.07 7.80 -52.48 -0.41 1.66 16 14 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 15 N -0.87 -26.93 13.22 55.49 0.73 -26.20 16 16 Si 0.92 22.15 29.55 -169.99 -5.02 17.12 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 N -0.67 -5.47 5.65 -107.99 -0.61 -6.08 16 21 C 0.15 1.09 5.60 -4.98 -0.03 1.06 16 22 C 0.21 2.07 7.46 -155.41 -1.16 0.91 16 23 N -0.47 -6.04 11.25 -10.81 -0.12 -6.16 16 24 C -0.03 -0.27 11.87 -17.82 -0.21 -0.48 16 25 C -0.06 -0.49 11.58 -16.57 -0.19 -0.68 16 26 N -0.46 -3.56 3.15 -121.27 -0.38 -3.94 16 27 C 0.07 0.25 10.79 59.85 0.65 0.90 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.31 6.27 -51.93 -0.33 -0.02 16 30 H 0.07 0.55 6.57 -51.93 -0.34 0.21 16 31 H 0.07 0.33 7.48 -51.93 -0.39 -0.06 16 32 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.49 6.69 -51.93 -0.35 0.14 16 35 H 0.07 0.85 6.18 -51.93 -0.32 0.53 16 36 H 0.07 0.85 6.83 -51.93 -0.35 0.49 16 37 H 0.40 5.40 8.14 -40.82 -0.33 5.06 16 38 H 0.09 1.87 8.14 -51.91 -0.42 1.45 16 39 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 40 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.34 2.64 6.56 -39.29 -0.26 2.38 16 42 H 0.04 0.23 7.08 -51.93 -0.37 -0.14 16 43 H 0.11 0.83 7.92 -51.93 -0.41 0.42 16 44 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 45 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 47 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.08 0.22 7.66 -51.93 -0.40 -0.18 16 LS Contribution 403.35 15.07 6.08 6.08 Total: -1.00 -38.11 403.35 -9.74 -47.85 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.59 Total: 3.13 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -0.37 Total: -4.44 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.71 Total: -53.34 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.21 Total: -4.02 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.11 -9.74 -47.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753824194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.136 kcal (2) G-P(sol) polarization free energy of solvation -38.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds