Wall clock time and date at job start Sat Apr 11 2020 06:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00472 * 2 1 4 4 O 1.20831 * 119.99760 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00286 * 180.02562 * 3 2 1 6 6 F 1.39897 * 110.76348 * 56.79655 * 5 3 2 7 7 C 1.55139 * 110.70535 * 293.59710 * 5 3 2 8 8 C 1.54903 * 101.65529 * 205.96499 * 7 5 3 9 9 N 1.47850 * 104.79517 * 37.07154 * 8 7 5 10 10 C 1.38577 * 110.99648 * 213.64031 * 9 8 7 11 11 N 1.31220 * 126.47620 * 120.80149 * 10 9 8 12 12 N 1.28530 * 109.86348 * 180.02562 * 11 10 9 13 13 C 1.30290 * 110.04929 * 359.72065 * 12 11 10 14 14 C 1.50705 * 126.34536 * 180.31013 * 13 12 11 15 15 C 1.52995 * 109.47248 * 240.81072 * 14 13 12 16 16 C 1.52995 * 109.47002 * 0.81261 * 14 13 12 17 17 C 1.50699 * 109.46949 * 120.81210 * 14 13 12 18 18 H 1.08003 * 120.00573 * 357.62535 * 17 14 13 19 19 C 1.37881 * 119.99708 * 177.63050 * 17 14 13 20 20 N 1.31515 * 120.00236 * 2.99512 * 19 17 14 21 21 Si 1.86809 * 119.99713 * 183.00237 * 19 17 14 22 22 H 1.48502 * 109.47125 * 94.98608 * 21 19 17 23 23 H 1.48502 * 109.46935 * 214.98426 * 21 19 17 24 24 H 1.48500 * 109.47133 * 334.98364 * 21 19 17 25 25 N 1.36456 * 126.47331 * 300.83525 * 10 9 8 26 26 C 1.46500 * 127.13595 * 359.97438 * 25 10 9 27 27 C 1.47451 * 108.56593 * 335.90337 * 9 8 7 28 28 H 1.08996 * 109.47021 * 299.99940 * 1 2 3 29 29 H 1.08998 * 109.46909 * 59.99669 * 1 2 3 30 30 H 1.09000 * 109.47223 * 180.02562 * 1 2 3 31 31 H 1.09002 * 110.99290 * 324.05706 * 7 5 3 32 32 H 1.09001 * 110.99208 * 87.87324 * 7 5 3 33 33 H 1.09001 * 110.37366 * 278.24463 * 8 7 5 34 34 H 1.08994 * 110.37385 * 155.90130 * 8 7 5 35 35 H 1.08999 * 109.47216 * 53.28451 * 15 14 13 36 36 H 1.08999 * 109.47299 * 173.27939 * 15 14 13 37 37 H 1.08998 * 109.47315 * 293.28057 * 15 14 13 38 38 H 1.09005 * 109.47263 * 59.99916 * 16 14 13 39 39 H 1.09006 * 109.47346 * 180.02562 * 16 14 13 40 40 H 1.08999 * 109.47381 * 299.99637 * 16 14 13 41 41 H 0.96997 * 120.00024 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.47113 * 85.14787 * 26 25 10 43 43 H 1.08997 * 109.47086 * 325.14682 * 26 25 10 44 44 H 1.09001 * 109.47259 * 205.14733 * 26 25 10 45 45 H 1.08991 * 109.88442 * 120.39742 * 27 9 8 46 46 H 1.09002 * 109.88585 * 241.58648 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 9 4.0987 0.5855 -1.0955 7 6 4.1451 0.7230 1.3289 8 6 5.4939 1.4791 1.4207 9 7 5.2066 2.8295 0.8917 10 6 6.3050 3.3445 0.2220 11 7 6.3471 3.7194 -1.0348 12 7 7.5242 4.1471 -1.3238 13 6 8.2949 4.0765 -0.2756 14 6 9.7428 4.4882 -0.2022 15 6 10.5997 3.2754 0.1661 16 6 10.1875 5.0332 -1.5609 17 6 9.9084 5.5575 0.8466 18 1 9.0455 5.9317 1.3775 19 6 11.1618 6.0583 1.1286 20 7 12.2046 5.6456 0.4417 21 14 11.3785 7.3227 2.4865 22 1 11.7578 6.6354 3.7470 23 1 12.4467 8.2810 2.1045 24 1 10.1035 8.0570 2.6873 25 7 7.5474 3.5570 0.7448 26 6 7.9874 3.2899 2.1164 27 6 4.0357 2.7448 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.4988 0.9739 2.1700 32 1 4.3043 -0.3536 1.2685 33 1 6.2485 0.9846 0.8091 34 1 5.8249 1.5402 2.4574 35 1 10.3901 2.4590 -0.5249 36 1 11.6545 3.5431 0.1028 37 1 10.3654 2.9602 1.1828 38 1 9.5769 5.8972 -1.8233 39 1 11.2349 5.3305 -1.5080 40 1 10.0677 4.2598 -2.3195 41 1 13.0863 5.9982 0.6398 42 1 8.2940 2.2475 2.2031 43 1 7.1663 3.4857 2.8059 44 1 8.8293 3.9377 2.3606 45 1 3.2388 3.3885 0.3716 46 1 4.3165 3.0445 -1.0102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772161219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:21 Heat of formation + Delta-G solvation = -28.133832 kcal Electronic energy + Delta-G solvation = -31119.832849 eV Core-core repulsion = 26768.649967 eV Total energy + Delta-G solvation = -4351.182882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.27177 -42.33835 -40.93722 -38.74059 -36.96006 -35.75489 -34.16983 -32.44932 -31.24467 -29.76640 -28.29489 -27.68839 -26.96772 -25.72569 -25.34561 -24.09183 -22.62641 -21.92497 -20.90108 -20.16591 -19.00113 -18.57499 -17.60439 -17.41077 -16.87396 -16.46475 -15.83011 -15.60782 -15.48878 -15.06606 -15.05300 -14.82328 -14.27027 -13.66932 -13.52713 -13.45631 -13.21806 -13.07751 -12.80955 -12.66337 -12.52932 -12.35687 -12.17912 -12.01564 -11.65804 -11.48203 -11.42775 -11.27332 -11.13020 -10.91154 -10.79818 -10.74765 -10.55550 -10.34447 -10.18935 -9.89098 -9.82507 -9.51115 -9.21873 -8.96231 -8.51503 -7.71696 -6.16888 -4.28613 1.53081 1.97278 2.42194 2.80206 3.17716 3.27461 3.30704 3.48499 3.64583 3.69495 3.91380 4.02083 4.27643 4.38205 4.53988 4.67875 4.77140 4.86814 5.06292 5.09439 5.13034 5.23470 5.25019 5.39818 5.50078 5.53584 5.57221 5.64123 5.75348 5.82463 6.02430 6.11492 6.38935 6.58572 6.71392 6.74691 6.80257 7.01569 7.11607 7.15835 7.28532 7.49472 7.53340 7.72163 7.87574 8.01398 8.18317 8.68851 9.37147 9.53675 10.84585 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.002769 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.607850 B =10110.764947 C =10384.727406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.347 6.347 3 C 0.462 3.538 4 O -0.478 6.478 5 C 0.112 3.888 6 F -0.170 7.170 7 C -0.138 4.138 8 C 0.039 3.961 9 N -0.431 5.431 10 C 0.305 3.695 11 N -0.325 5.325 12 N -0.309 5.309 13 C 0.250 3.750 14 C 0.144 3.856 15 C -0.129 4.129 16 C -0.116 4.116 17 C -0.516 4.516 18 H 0.056 0.944 19 C 0.074 3.926 20 N -0.877 5.877 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.284 1.284 24 H -0.274 1.274 25 N -0.471 5.471 26 C 0.074 3.926 27 C 0.038 3.962 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.012 0.988 36 H 0.094 0.906 37 H 0.031 0.969 38 H 0.035 0.965 39 H 0.087 0.913 40 H 0.019 0.981 41 H 0.264 0.736 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.152 -13.329 5.327 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.263 6.263 3 C 0.301 3.699 4 O -0.363 6.363 5 C 0.091 3.909 6 F -0.150 7.150 7 C -0.176 4.176 8 C -0.088 4.088 9 N -0.155 5.155 10 C -0.052 4.052 11 N -0.169 5.169 12 N -0.147 5.147 13 C -0.017 4.017 14 C 0.141 3.859 15 C -0.188 4.188 16 C -0.175 4.175 17 C -0.554 4.554 18 H 0.075 0.925 19 C -0.129 4.129 20 N -0.515 5.515 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.209 1.209 24 H -0.199 1.199 25 N -0.164 5.164 26 C -0.069 4.069 27 C -0.089 4.089 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.031 0.969 36 H 0.113 0.887 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.106 0.894 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.136 0.864 45 H 0.140 0.860 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.735 -12.411 4.289 21.272 hybrid contribution 0.367 -0.067 1.502 1.548 sum -16.369 -12.477 5.791 21.381 Atomic orbital electron populations 1.23393 0.75515 1.04194 1.02974 1.86544 1.24026 1.32371 1.83380 1.23492 0.91027 0.82159 0.73211 1.90722 1.66109 1.36092 1.43408 1.21865 0.86306 0.95482 0.87199 1.93005 1.86529 1.80716 1.54773 1.23360 0.97193 1.02310 0.94743 1.23305 0.96830 0.86244 1.02384 1.60444 1.00975 1.22053 1.32005 1.22347 0.85268 1.06820 0.90720 1.74276 1.15528 1.18995 1.08128 1.73987 0.96556 1.20694 1.23430 1.26126 0.98313 0.95296 0.81973 1.16942 0.78464 0.93909 0.96555 1.21877 1.04228 0.95169 0.97497 1.21619 1.03396 0.98490 0.93961 1.20885 0.93333 1.21003 1.20203 0.92541 1.24847 0.95715 0.96170 0.96205 1.69823 0.99331 1.43107 1.39191 0.86530 0.78144 0.81317 0.81808 1.20585 1.20929 1.19852 1.45913 1.08659 1.49248 1.12545 1.22214 1.02991 1.02731 0.79004 1.23479 0.92900 0.91638 1.00930 0.91472 0.91461 0.87621 0.87758 0.87414 0.91492 0.87918 0.96891 0.88743 0.95038 0.94562 0.89422 0.96240 0.92571 0.91540 0.90439 0.86419 0.85960 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.36 10.56 -39.24 -0.41 -3.77 16 3 C 0.46 5.29 7.03 36.01 0.25 5.54 16 4 O -0.48 -6.35 15.17 -18.75 -0.28 -6.63 16 5 C 0.11 1.33 1.53 -89.95 -0.14 1.20 16 6 F -0.17 -2.36 16.96 2.25 0.04 -2.32 16 7 C -0.14 -1.22 6.31 -24.60 -0.16 -1.37 16 8 C 0.04 0.44 5.83 -2.30 -0.01 0.43 16 9 N -0.43 -6.41 5.22 -171.30 -0.89 -7.30 16 10 C 0.31 5.84 6.98 -318.87 -2.23 3.62 16 11 N -0.32 -7.23 10.47 30.31 0.32 -6.91 16 12 N -0.31 -7.50 11.50 32.99 0.38 -7.12 16 13 C 0.25 5.75 6.28 -154.02 -0.97 4.79 16 14 C 0.14 3.41 0.50 -156.82 -0.08 3.34 16 15 C -0.13 -2.85 7.94 37.16 0.30 -2.56 16 16 C -0.12 -2.83 7.77 37.15 0.29 -2.54 16 17 C -0.52 -12.83 6.32 -34.44 -0.22 -13.05 16 18 H 0.06 1.45 7.56 -52.48 -0.40 1.05 16 19 C 0.07 1.83 5.14 -17.82 -0.09 1.74 16 20 N -0.88 -22.24 9.44 55.43 0.52 -21.72 16 21 Si 0.89 19.62 29.54 -169.99 -5.02 14.60 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 N -0.47 -9.20 3.21 -121.46 -0.39 -9.59 16 26 C 0.07 1.14 8.76 59.85 0.52 1.66 16 27 C 0.04 0.54 6.06 -2.83 -0.02 0.53 16 28 H 0.07 0.39 8.13 -51.93 -0.42 -0.03 16 29 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.74 8.04 -51.93 -0.42 0.32 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.85 7.79 -51.93 -0.40 0.44 16 34 H 0.10 0.92 7.84 -51.93 -0.41 0.51 16 35 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 2.24 6.22 -51.93 -0.32 1.92 16 37 H 0.03 0.63 6.47 -51.93 -0.34 0.30 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.09 2.22 6.15 -51.93 -0.32 1.90 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.26 6.43 8.31 -40.82 -0.34 6.10 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 44 H 0.12 2.04 5.63 -51.93 -0.29 1.75 16 45 H 0.12 1.66 6.81 -51.93 -0.35 1.31 16 46 H 0.12 1.98 6.29 -51.93 -0.33 1.65 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -30.81 370.73 -8.15 -38.96 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.51 Total: 1.66 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.47 Total: 4.57 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.06 Total: -52.64 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.70 Total: -10.40 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.81 -8.15 -38.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772161219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.823 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds