Wall clock time and date at job start Sat Apr 11 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34225 * 116.99866 * 2 1 4 4 O 1.20821 * 120.00145 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99994 * 180.02562 * 3 2 1 6 6 F 1.39902 * 110.28819 * 310.69462 * 5 3 2 7 7 C 1.54256 * 110.32619 * 72.82552 * 5 3 2 8 8 C 1.54384 * 105.06396 * 118.99833 * 7 5 3 9 9 N 1.48568 * 104.59122 * 23.85311 * 8 7 5 10 10 C 1.38577 * 110.99676 * 200.96444 * 9 8 7 11 11 N 1.31211 * 126.47497 * 119.81773 * 10 9 8 12 12 N 1.28533 * 109.86098 * 179.81468 * 11 10 9 13 13 C 1.30289 * 110.05198 * 0.45747 * 12 11 10 14 14 C 1.50699 * 126.34780 * 179.68955 * 13 12 11 15 15 C 1.52994 * 109.47550 * 238.45697 * 14 13 12 16 16 C 1.53005 * 109.46944 * 358.46093 * 14 13 12 17 17 C 1.50709 * 109.47024 * 118.45666 * 14 13 12 18 18 H 1.08001 * 120.00129 * 0.02562 * 17 14 13 19 19 C 1.37875 * 119.99720 * 180.02562 * 17 14 13 20 20 N 1.31516 * 120.00320 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 119.99812 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.47290 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47326 * 119.99945 * 21 19 17 24 24 H 1.48497 * 109.47280 * 240.00076 * 21 19 17 25 25 N 1.36458 * 126.46935 * 300.11857 * 10 9 8 26 26 C 1.46491 * 127.13869 * 359.97438 * 25 10 9 27 27 C 1.48825 * 104.23451 * 320.49380 * 9 8 7 28 28 H 1.09001 * 109.47172 * 60.00482 * 1 2 3 29 29 H 1.09003 * 109.46775 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47232 * 299.99985 * 1 2 3 31 31 H 1.09004 * 110.32503 * 237.89664 * 7 5 3 32 32 H 1.08997 * 110.32484 * 0.02562 * 7 5 3 33 33 H 1.09001 * 110.41362 * 142.62999 * 8 7 5 34 34 H 1.09001 * 110.41174 * 265.07967 * 8 7 5 35 35 H 1.09001 * 109.46840 * 53.55504 * 15 14 13 36 36 H 1.08998 * 109.47816 * 173.55540 * 15 14 13 37 37 H 1.08997 * 109.47344 * 293.56001 * 15 14 13 38 38 H 1.08996 * 109.47328 * 59.99826 * 16 14 13 39 39 H 1.09005 * 109.46672 * 179.97438 * 16 14 13 40 40 H 1.08995 * 109.46625 * 299.99529 * 16 14 13 41 41 H 0.97002 * 119.99912 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.47721 * 92.05408 * 26 25 10 43 43 H 1.09003 * 109.47202 * 212.05720 * 26 25 10 44 44 H 1.09003 * 109.47135 * 332.05491 * 26 25 10 45 45 H 1.09005 * 110.45251 * 280.77096 * 27 9 8 46 46 H 1.08997 * 110.49287 * 158.25210 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 9 4.0959 0.4456 0.9940 7 6 4.1231 0.8767 -1.3829 8 6 4.8756 2.1267 -1.8876 9 7 5.2266 2.8759 -0.6536 10 6 5.4775 4.2090 -0.9366 11 7 4.8306 5.2439 -0.4547 12 7 5.3307 6.3299 -0.9265 13 6 6.3118 6.0542 -1.7382 14 6 7.1493 7.0504 -2.4980 15 6 7.0383 6.7712 -3.9981 16 6 6.6492 8.4662 -2.2043 17 6 8.5888 6.9271 -2.0692 18 1 8.8693 6.1998 -1.3217 19 6 9.5477 7.7428 -2.6314 20 7 9.2062 8.6288 -3.5413 21 14 11.3321 7.5896 -2.1005 22 1 11.4527 6.5266 -1.0706 23 1 12.1698 7.2383 -3.2754 24 1 11.7926 8.8823 -1.5331 25 7 6.4405 4.6933 -1.7734 26 6 7.4110 3.9164 -2.5483 27 6 4.0269 2.7324 0.2153 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.8091 0.0350 -1.2866 32 1 3.3080 0.6246 -2.0612 33 1 5.7780 1.8359 -2.4254 34 1 4.2285 2.7279 -2.5262 35 1 5.9873 6.7473 -4.2864 36 1 7.5494 7.5579 -4.5530 37 1 7.4988 5.8094 -4.2238 38 1 6.7283 8.6652 -1.1355 39 1 7.2552 9.1868 -2.7535 40 1 5.6081 8.5553 -2.5144 41 1 9.8809 9.2025 -3.9370 42 1 7.0051 3.7122 -3.5391 43 1 8.3367 4.4838 -2.6447 44 1 7.6136 2.9749 -2.0376 45 1 3.2466 3.4276 -0.0948 46 1 4.2905 2.8971 1.2600 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772161221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:23 Heat of formation + Delta-G solvation = -30.036253 kcal Electronic energy + Delta-G solvation = -31048.891215 eV Core-core repulsion = 26697.625839 eV Total energy + Delta-G solvation = -4351.265377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.26172 -42.35538 -40.96901 -38.75761 -36.92917 -35.76592 -34.19587 -32.50409 -31.25218 -29.65542 -28.32405 -27.70070 -27.00878 -25.73460 -25.35035 -24.07490 -22.77547 -22.00703 -20.67623 -20.32525 -18.97540 -18.56669 -17.66912 -17.30001 -16.77558 -16.44394 -16.00487 -15.57036 -15.19278 -15.12309 -15.02312 -14.85360 -14.58920 -13.87628 -13.53693 -13.48158 -13.15835 -13.00419 -12.95076 -12.63479 -12.48841 -12.40860 -12.16631 -11.85674 -11.65897 -11.46059 -11.41017 -11.26532 -11.14850 -10.96997 -10.79860 -10.76169 -10.58175 -10.35859 -10.24140 -9.92074 -9.84918 -9.52345 -9.26019 -8.97886 -8.52551 -7.78383 -6.17100 -4.28993 1.53672 1.93346 2.38497 2.82277 3.18124 3.28118 3.31033 3.50857 3.63320 3.74012 3.90746 3.98109 4.27587 4.28640 4.66114 4.69024 4.77751 4.79384 5.01791 5.09024 5.11067 5.16594 5.19237 5.39767 5.44687 5.51235 5.53690 5.60978 5.74549 5.80333 5.97910 6.00757 6.30060 6.55994 6.67429 6.70702 6.78141 6.99165 7.11728 7.14037 7.27050 7.48254 7.52396 7.69804 7.86363 8.00726 8.17731 8.68585 9.37084 9.51453 10.84366 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.024424 B = 0.002789 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.155131 B =10036.599508 C =10463.295817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.347 6.347 3 C 0.452 3.548 4 O -0.474 6.474 5 C 0.133 3.867 6 F -0.171 7.171 7 C -0.135 4.135 8 C 0.029 3.971 9 N -0.417 5.417 10 C 0.300 3.700 11 N -0.319 5.319 12 N -0.309 5.309 13 C 0.252 3.748 14 C 0.144 3.856 15 C -0.129 4.129 16 C -0.118 4.118 17 C -0.514 4.514 18 H 0.056 0.944 19 C 0.073 3.927 20 N -0.878 5.878 21 Si 0.895 3.105 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.281 1.281 25 N -0.471 5.471 26 C 0.074 3.926 27 C 0.042 3.958 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.011 0.989 36 H 0.093 0.907 37 H 0.031 0.969 38 H 0.036 0.964 39 H 0.089 0.911 40 H 0.018 0.982 41 H 0.264 0.736 42 H 0.068 0.932 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.108 0.892 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.769 -18.588 0.410 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.263 6.263 3 C 0.292 3.708 4 O -0.359 6.359 5 C 0.112 3.888 6 F -0.151 7.151 7 C -0.173 4.173 8 C -0.098 4.098 9 N -0.141 5.141 10 C -0.056 4.056 11 N -0.164 5.164 12 N -0.147 5.147 13 C -0.016 4.016 14 C 0.141 3.859 15 C -0.188 4.188 16 C -0.176 4.176 17 C -0.553 4.553 18 H 0.075 0.925 19 C -0.130 4.130 20 N -0.516 5.516 21 Si 0.723 3.277 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.207 1.207 25 N -0.165 5.165 26 C -0.069 4.069 27 C -0.086 4.086 28 H 0.085 0.915 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.112 0.888 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.037 0.963 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.132 0.868 44 H 0.097 0.903 45 H 0.126 0.874 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.429 -17.585 1.369 21.017 hybrid contribution 1.160 -0.725 -0.591 1.490 sum -10.268 -18.310 0.778 21.007 Atomic orbital electron populations 1.23399 0.75498 1.04185 1.03024 1.86542 1.24021 1.32258 1.83476 1.23675 0.91379 0.82266 0.73522 1.90760 1.66011 1.36036 1.43133 1.21365 0.85701 0.92265 0.89443 1.92989 1.86682 1.73056 1.62387 1.22983 1.01505 0.99969 0.92867 1.23378 1.00896 0.93583 0.91963 1.62283 1.35019 1.04514 1.12252 1.22354 0.93544 0.91632 0.98119 1.74430 1.23280 0.94233 1.24422 1.74003 1.10526 1.18137 1.12063 1.26151 0.96378 0.81340 0.97686 1.16951 0.91226 0.87801 0.89891 1.21887 0.97296 1.01903 0.97712 1.21626 0.97526 0.97818 1.00614 1.20902 0.90223 1.20701 1.23445 0.92537 1.24843 0.98941 0.94625 0.94555 1.69824 1.33602 1.21282 1.26855 0.86478 0.84420 0.78316 0.78508 1.19798 1.20854 1.20727 1.45953 1.26909 1.07951 1.35643 1.22202 0.93719 0.96399 0.94540 1.23615 0.92359 0.91739 1.00899 0.91490 0.87588 0.91435 0.87051 0.88661 0.87906 0.91836 0.96950 0.88795 0.94978 0.94496 0.89266 0.96306 0.92615 0.91308 0.86795 0.90279 0.87385 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.37 10.56 -39.24 -0.41 -3.79 16 3 C 0.45 5.26 6.77 36.01 0.24 5.50 16 4 O -0.47 -6.70 15.17 -18.75 -0.28 -6.98 16 5 C 0.13 1.50 1.69 -90.39 -0.15 1.35 16 6 F -0.17 -2.04 16.84 2.25 0.04 -2.00 16 7 C -0.14 -1.19 6.48 -25.35 -0.16 -1.35 16 8 C 0.03 0.33 5.86 -2.17 -0.01 0.31 16 9 N -0.42 -6.21 5.44 -169.86 -0.92 -7.14 16 10 C 0.30 5.72 7.05 -318.88 -2.25 3.48 16 11 N -0.32 -7.09 11.04 30.31 0.33 -6.76 16 12 N -0.31 -7.50 11.50 32.99 0.38 -7.12 16 13 C 0.25 5.77 6.28 -154.02 -0.97 4.80 16 14 C 0.14 3.41 0.53 -156.81 -0.08 3.33 16 15 C -0.13 -2.84 7.95 37.15 0.30 -2.55 16 16 C -0.12 -2.86 7.75 37.16 0.29 -2.57 16 17 C -0.51 -12.83 6.53 -34.44 -0.23 -13.06 16 18 H 0.06 1.45 7.49 -52.49 -0.39 1.06 16 19 C 0.07 1.83 5.15 -17.82 -0.09 1.73 16 20 N -0.88 -22.29 9.43 55.43 0.52 -21.76 16 21 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 N -0.47 -9.17 3.21 -121.47 -0.39 -9.56 16 26 C 0.07 1.14 8.39 59.84 0.50 1.64 16 27 C 0.04 0.59 5.28 -2.03 -0.01 0.58 16 28 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 31 H 0.11 0.80 8.04 -51.93 -0.42 0.38 16 32 H 0.09 0.67 7.70 -51.93 -0.40 0.27 16 33 H 0.10 0.95 6.93 -51.93 -0.36 0.59 16 34 H 0.06 0.76 7.97 -51.93 -0.41 0.35 16 35 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.09 2.22 6.27 -51.93 -0.33 1.90 16 37 H 0.03 0.64 6.33 -51.93 -0.33 0.31 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 42 H 0.07 0.89 7.96 -51.93 -0.41 0.48 16 43 H 0.11 1.95 6.08 -51.93 -0.32 1.63 16 44 H 0.08 1.00 7.62 -51.93 -0.40 0.61 16 45 H 0.11 1.73 6.18 -51.93 -0.32 1.41 16 46 H 0.12 1.64 8.12 -51.93 -0.42 1.22 16 LS Contribution 370.20 15.07 5.58 5.58 Total: -1.00 -30.89 370.20 -8.23 -39.12 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.49 Total: 1.23 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -1.56 Total: 4.47 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.08 Total: -52.34 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.70 Total: -10.77 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.89 -8.23 -39.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772161221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.085 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds